ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23i03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104417.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A03, full insert sequence Length = 1035 Score = 81.8 bits (41), Expect = 9e-13 Identities = 114/142 (80%) Strand = Plus / Minus Query: 63 atctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaaccggt 122 ||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| ||| Sbjct: 880 atctacactttattattcttcgccatctcttccacatcaagctctactgccagaactggt 821 Query: 123 gaatcctggaacatggctacacggctgttgnncactggaccatgannnnnnnnngttctt 182 ||||||||| |||||| | |||||||| |||||| ||||| |||||| Sbjct: 820 gaatcctggttcatggccattcggctgttctccactgggccatggtcgacagccgttctt 761 Query: 183 aaagagtatatgactctgccaa 204 ||||||||||| |||||||||| Sbjct: 760 aaagagtatatcactctgccaa 739
>dbj|AK070814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072A16, full insert sequence Length = 1035 Score = 81.8 bits (41), Expect = 9e-13 Identities = 114/142 (80%) Strand = Plus / Minus Query: 63 atctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaaccggt 122 ||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| ||| Sbjct: 880 atctacactttattattcttcgccatctcttccacatcaagctctactgccagaactggt 821 Query: 123 gaatcctggaacatggctacacggctgttgnncactggaccatgannnnnnnnngttctt 182 ||||||||| |||||| | |||||||| |||||| ||||| |||||| Sbjct: 820 gaatcctggttcatggccattcggctgttctccactgggccatggtcgacagccgttctt 761 Query: 183 aaagagtatatgactctgccaa 204 ||||||||||| |||||||||| Sbjct: 760 aaagagtatatcactctgccaa 739
>ref|XM_470956.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 621 Score = 77.8 bits (39), Expect = 1e-11 Identities = 112/140 (80%) Strand = Plus / Minus Query: 65 ctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaaccggtga 124 ||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| ||||| Sbjct: 621 ctacactttattattcttcgccatctcttccacatcaagctctactgccagaactggtga 562 Query: 125 atcctggaacatggctacacggctgttgnncactggaccatgannnnnnnnngttcttaa 184 ||||||| |||||| | |||||||| |||||| ||||| |||||||| Sbjct: 561 atcctggttcatggccattcggctgttctccactgggccatggtcgacagccgttcttaa 502 Query: 185 agagtatatgactctgccaa 204 ||||||||| |||||||||| Sbjct: 501 agagtatatcactctgccaa 482
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 5e-11 Identities = 77/90 (85%) Strand = Plus / Plus Query: 63 atctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaaccggt 122 ||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| ||| Sbjct: 173218 atctacactttattattcttcgccatctcttccacatcaagctctactgccagaactggt 173277 Query: 123 gaatcctggaacatggctacacggctgttg 152 ||||||||| |||||| | ||||||||| Sbjct: 173278 gaatcctggttcatggccattcggctgttg 173307 Score = 48.1 bits (24), Expect = 0.012 Identities = 27/28 (96%) Strand = Plus / Plus Query: 177 gttcttaaagagtatatgactctgccaa 204 ||||||||||||||||| |||||||||| Sbjct: 173428 gttcttaaagagtatatcactctgccaa 173455
>emb|AL606442.3|OSJN00014 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0068L06, complete sequence Length = 145517 Score = 75.8 bits (38), Expect = 5e-11 Identities = 77/90 (85%) Strand = Plus / Plus Query: 63 atctacattttattgttcttcaccatctcttccacgtcgagctctaccgccaaaaccggt 122 ||||||| |||||| |||||| ||||||||||||| || |||||||| |||| ||| ||| Sbjct: 104505 atctacactttattattcttcgccatctcttccacatcaagctctactgccagaactggt 104564 Query: 123 gaatcctggaacatggctacacggctgttg 152 ||||||||| |||||| | ||||||||| Sbjct: 104565 gaatcctggttcatggccattcggctgttg 104594 Score = 48.1 bits (24), Expect = 0.012 Identities = 27/28 (96%) Strand = Plus / Plus Query: 177 gttcttaaagagtatatgactctgccaa 204 ||||||||||||||||| |||||||||| Sbjct: 104715 gttcttaaagagtatatcactctgccaa 104742
>emb|AL355605.10| Human DNA sequence from clone RP11-456P14 on chromosome 13, complete sequence Length = 55142 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 tatatgactctgccaacaata 209 ||||||||||||||||||||| Sbjct: 11287 tatatgactctgccaacaata 11307
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tattgttcttcaccatctct 92 |||||||||||||||||||| Sbjct: 483183 tattgttcttcaccatctct 483202
>gb|AC093829.2| Homo sapiens BAC clone RP11-401E5 from 4, complete sequence Length = 169483 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tacattttattgttcttcac 85 |||||||||||||||||||| Sbjct: 149193 tacattttattgttcttcac 149174
>gb|AC099519.2| Homo sapiens chromosome 5 clone RP11-695O10, complete sequence Length = 206163 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 acaagagtaaatgatacaccacag 53 |||||||||||| ||||||||||| Sbjct: 75480 acaagagtaaattatacaccacag 75457
>gb|AC099504.2| Homo sapiens chromosome 5 clone RP11-219L6, complete sequence Length = 162841 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 acaagagtaaatgatacaccacag 53 |||||||||||| ||||||||||| Sbjct: 21851 acaagagtaaattatacaccacag 21828
>gb|AC008911.6| Homo sapiens chromosome 5 clone CTD-2268J5, complete sequence Length = 154963 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 acaagagtaaatgatacaccacag 53 |||||||||||| ||||||||||| Sbjct: 9746 acaagagtaaattatacaccacag 9769
>gb|AC008809.6|AC008809 Homo sapiens chromosome 5 clone CTD-2093D7, complete sequence Length = 47364 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 acaagagtaaatgatacaccacag 53 |||||||||||| ||||||||||| Sbjct: 30697 acaagagtaaattatacaccacag 30720
>gb|AC146881.3| Otolemur garnettii clone CH256-571D18, complete sequence Length = 240447 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 tattgttcttcaccatctct 92 |||||||||||||||||||| Sbjct: 159906 tattgttcttcaccatctct 159925 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,537,249 Number of Sequences: 3902068 Number of extensions: 1537249 Number of successful extensions: 26616 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26587 Number of HSP's gapped (non-prelim): 29 length of query: 229 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 207 effective length of database: 17,147,199,772 effective search space: 3549470352804 effective search space used: 3549470352804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
