>HDAC7_HUMAN (Q8WUI4) Histone deacetylase 7a (HD7a)|
          Length = 952

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 18/127 (14%)
 Frame = +1

Query: 79  SPTDKPPLSPLAKPTATAGNIQKRSYQNKYDEELIPRQKKALRRRRYGQESHXXXXXXXX 258
           S T   PL P A      G +Q R  Q K   ++I R  K   + R  Q           
Sbjct: 354 SRTRSEPLPPSATAPPPPGPMQPRLEQLKTHVQVIKRSAKPSEKPRLRQIPSAEDLETDG 413

Query: 259 XXPSQVTKT-----KYGTGRESKKS---MHYLPRLML----------PAGAAAATCFLCL 384
             P QV        + G G+   +    +   P+++L          P G+   T  L L
Sbjct: 414 GGPGQVVDDGLEHRELGHGQPEARGPAPLQQHPQVLLWEQQRLAGRLPRGSTGDTVLLPL 473

Query: 385 SRGGRRP 405
           ++GG RP
Sbjct: 474 AQGGHRP 480

>TMM28_HUMAN (O75949) Transmembrane protein 28 (TED protein)|
          Length = 473

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 516 CCCCCWNPEMSSIP 557
           CCCCCW P  S  P
Sbjct: 20  CCCCCWAPRPSDKP 33

>YWKB_BACSU (P45869) Hypothetical protein ywkB|
          Length = 319

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 484 GILVSPVSDPVAALKAQYGSSSKFLGQDADHPWKDIG 374
           GI+V+ + DP+A + A  G SSK   +  D  WK  G
Sbjct: 135 GIVVNAILDPLAIIIATVGESSKKNEESGDSFWKMTG 171


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,209,967
Number of Sequences: 219361
Number of extensions: 1927466
Number of successful extensions: 6162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6136
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)