ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACP1_HORVU (P02902) Acyl carrier protein 1, chloroplast precurso... 45 4e-05
2ACP1_CASGL (P93092) Acyl carrier protein 1, chloroplast precurso... 34 0.11
3ACP3_HORVU (P15543) Acyl carrier protein 3, chloroplast precurso... 31 0.70
4ACP3_CUPLA (P52413) Acyl carrier protein 3, chloroplast precurso... 31 0.70
5ACP4_CUPLA (P52414) Acyl carrier protein 4, chloroplast precurso... 31 0.92
6ACP2_CUPLA (P52412) Acyl carrier protein 2, chloroplast precurso... 31 0.92
7ACP1_CUPLA (P52411) Acyl carrier protein 1, chloroplast precurso... 31 0.92
8ACP2_HORVU (P08817) Acyl carrier protein 2, chloroplast precurso... 29 2.7
9UBP9_YEAST (P39967) Ubiquitin carboxyl-terminal hydrolase 9 (EC ... 29 3.5

>ACP1_HORVU (P02902) Acyl carrier protein 1, chloroplast precursor (Acyl|
           carrier protein I) (ACP I)
          Length = 149

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = -3

Query: 296 SAQDIAXVQDAANLIEKLVTEKTA 225
           SAQDIA VQDAANLIEKLVTEKTA
Sbjct: 126 SAQDIATVQDAANLIEKLVTEKTA 149



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>ACP1_CASGL (P93092) Acyl carrier protein 1, chloroplast precursor (ACP 1)|
          Length = 136

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = -3

Query: 296 SAQDIAXVQDAANLIEKLVTEKT 228
           SAQ IA VQDAA+LIEKL+ +K+
Sbjct: 113 SAQSIATVQDAADLIEKLIEKKS 135



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>ACP3_HORVU (P15543) Acyl carrier protein 3, chloroplast precursor (Acyl|
           carrier protein III) (ACP III)
          Length = 132

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = -3

Query: 296 SAQDIAXVQDAANLIEKLVTEKTA 225
           SAQ IA V+DAA LI+KLV+ K++
Sbjct: 109 SAQAIATVEDAATLIDKLVSAKSS 132



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>ACP3_CUPLA (P52413) Acyl carrier protein 3, chloroplast precursor (ACP)|
          Length = 143

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 16/22 (72%), Positives = 17/22 (77%)
 Frame = -3

Query: 296 SAQDIAXVQDAANLIEKLVTEK 231
           SAQ I  VQDAA+LIEKLV  K
Sbjct: 121 SAQSIQTVQDAADLIEKLVGNK 142



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>ACP4_CUPLA (P52414) Acyl carrier protein 4, chloroplast precursor (ACP)|
          Length = 139

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = -3

Query: 296 SAQDIAXVQDAANLIEKLVTEK 231
           SAQ I  VQDAA+LIEKL+ +K
Sbjct: 116 SAQSIQTVQDAADLIEKLMEKK 137



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>ACP2_CUPLA (P52412) Acyl carrier protein 2, chloroplast precursor (ACP)|
          Length = 137

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = -3

Query: 296 SAQDIAXVQDAANLIEKLVTEK 231
           SAQ I  VQDAA+LIEKL+ +K
Sbjct: 114 SAQSIQTVQDAADLIEKLMEKK 135



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>ACP1_CUPLA (P52411) Acyl carrier protein 1, chloroplast precursor (ACP)|
          Length = 140

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = -3

Query: 296 SAQDIAXVQDAANLIEKLVTEK 231
           SAQ I  VQDAA+LIEKL+ +K
Sbjct: 117 SAQSIQTVQDAADLIEKLMEKK 138



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>ACP2_HORVU (P08817) Acyl carrier protein 2, chloroplast precursor (Acyl|
           carrier protein II) (ACP II)
          Length = 129

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -3

Query: 296 SAQDIAXVQDAANLIEKLV 240
           SAQ IA V+DAANLI+ LV
Sbjct: 109 SAQTIATVEDAANLIDSLV 127



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>UBP9_YEAST (P39967) Ubiquitin carboxyl-terminal hydrolase 9 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 9)
           (Ubiquitin-specific-processing protease 9)
           (Deubiquitinating enzyme 9)
          Length = 754

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
 Frame = +1

Query: 40  APTQNLERMKKEQMAMNTQHRLNAKLSINYFL----------SPQMRPKNQKSTDPDDTF 189
           +PT+ ++ +KKE +  NT  + +A   +N+ L          +P+MR   QK+ + +D F
Sbjct: 413 SPTEFVKILKKENVLFNTMMQQDAHEFLNFLLNDFSEYIQRNNPRMRFGPQKTDNSNDNF 472


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,086,943
Number of Sequences: 219361
Number of extensions: 693438
Number of successful extensions: 1754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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