ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TCF17_MOUSE (Q61751) Zinc finger protein 354A (Transcription fac... 30 4.1
2GCP3_XENLA (O73787) Gamma-tubulin complex component 3 homolog (G... 29 7.0

>TCF17_MOUSE (Q61751) Zinc finger protein 354A (Transcription factor 17) (Renal|
           transcription factor Kid-1) (Kidney, ischemia, and
           developmentally-regulated protein 1)
          Length = 572

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 300 CQLRVSKAYVACDARFFQTLCRFNRKQTEENQKSENISGVQSRVEE 437
           C  R +K+    D+ F + + R ++++   N KSEN+S  + ++EE
Sbjct: 89  CSQRTTKSTQTQDSSFRELIMRKSKRKEPWNMKSENLSIHEGKLEE 134



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>GCP3_XENLA (O73787) Gamma-tubulin complex component 3 homolog (Gamma ring|
           complex protein 109) (Xgrip109) (x109p)
          Length = 906

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 359 LQIQQKTNRRESEK*KYIRGPVQG*RGSRLQEFRHQIPSCRSNCR 493
           LQ +++   RESE    +    +     R+QEF+  IP  RS  R
Sbjct: 803 LQFEERKKERESEGEWGVTAAEEDVENKRIQEFQESIPKMRSQLR 847


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,661,154
Number of Sequences: 219361
Number of extensions: 1273767
Number of successful extensions: 2714
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2704
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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