ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 90 9e-15
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
3dbj|AK072038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
4dbj|AK070022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
5dbj|AK060828.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 9e-15
6ref|XM_473874.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
7gb|AC116035.2| Homo sapiens chromosome 3 clone RP11-261F17, comp... 42 1.9
8dbj|AK054505.1| Mus musculus 2 days pregnant adult female ovary ... 42 1.9
9emb|AL845445.14| Mouse DNA sequence from clone RP23-380B10 on ch... 42 1.9
10gb|AC084323.28| Mus musculus strain C57BL/6J chromosome 2 clone ... 42 1.9
11gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, co... 40 7.4
12ref|XM_951814.1| Neurospora crassa OR74A hypothetical protein ( ... 40 7.4
13ref|XM_328139.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.4
14gb|AC151324.2| Xenopus tropicalis clone ISB-266M19, complete seq... 40 7.4
15emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, co... 40 7.4
16ref|XM_445027.1| Candida glabrata CBS138, CAGL0B01331g partial mRNA 40 7.4
17emb|CR380948.1| Candida glabrata strain CBS138 chromosome B comp... 40 7.4
18emb|AL513408.1|NC61D6 Neurospora crassa DNA linkage group II Cos... 40 7.4
19gb|AC079257.7| Homo sapiens BAC clone RP11-367I6 from 4, complet... 40 7.4
20gb|AC096506.5| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cance... 40 7.4
21gb|AC020732.4|AC020732 Homo sapiens BAC clone RP11-556H16 from X... 40 7.4
22gb|AC151318.2| Xenopus tropicalis clone ISB-241L4, complete sequ... 40 7.4 
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Plus

                                                                          
Query: 134    tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 193
              ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 135864 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 135923

                                                           
Query: 194    ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 237
              || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 135924 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 135967



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                          
Query: 348    cagggatatcacctgtaagagtcctgaatgcaaattccaggcatgggtctgaccagatac 407
              ||||||| ||||||| ||||||| |||  ||||| |  |||||||| |||||||||||||
Sbjct: 136048 cagggatgtcacctgcaagagtcttgatcgcaaacttgaggcatggatctgaccagatac 136107

                                                               
Query: 408    ttcggaacagcgatgacagggaatatccgggcatagcatcagctgttcc 456
              |||| || | |||||| ||||   | || ||||||||||||||||||||
Sbjct: 136108 ttcgcaataacgatgaaagggcggacccaggcatagcatcagctgttcc 136156



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                             
Query: 8      caacaagacacagtctttattgaaacatgcatccttgttaaggtacc 54
              |||||||| ||||||||| ||| ||||||||||||||| ||||||||
Sbjct: 135731 caacaagatacagtctttcttgcaacatgcatccttgtcaaggtacc 135777
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Plus

                                                                            
Query: 134      tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 193
                ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 31153783 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 31153842

                                                             
Query: 194      ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 237
                || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 31153843 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 31153886



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                            
Query: 348      cagggatatcacctgtaagagtcctgaatgcaaattccaggcatgggtctgaccagatac 407
                ||||||| ||||||| ||||||| |||  ||||| |  |||||||| |||||||||||||
Sbjct: 31153967 cagggatgtcacctgcaagagtcttgatcgcaaacttgaggcatggatctgaccagatac 31154026

                                                                 
Query: 408      ttcggaacagcgatgacagggaatatccgggcatagcatcagctgttcc 456
                |||| || | |||||| ||||   | || ||||||||||||||||||||
Sbjct: 31154027 ttcgcaataacgatgaaagggcggacccaggcatagcatcagctgttcc 31154075



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 8        caacaagacacagtctttattgaaacatgcatccttgttaaggtacc 54
                |||||||| ||||||||| ||| ||||||||||||||| ||||||||
Sbjct: 31153650 caacaagatacagtctttcttgcaacatgcatccttgtcaaggtacc 31153696
to top
>dbj|AK072038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M16, full
            insert sequence
          Length = 1900

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Minus

                                                                        
Query: 134  tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 193
            ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 1504 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 1445

                                                         
Query: 194  ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 237
            || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 1444 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 1401



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                        
Query: 348  cagggatatcacctgtaagagtcctgaatgcaaattccaggcatgggtctgaccagatac 407
            ||||||| ||||||| ||||||| |||  ||||| |  |||||||| |||||||||||||
Sbjct: 1320 cagggatgtcacctgcaagagtcttgatcgcaaacttgaggcatggatctgaccagatac 1261

                                                             
Query: 408  ttcggaacagcgatgacagggaatatccgggcatagcatcagctgttcc 456
            |||| || | |||||| ||||   | || ||||||||||||||||||||
Sbjct: 1260 ttcgcaataacgatgaaagggcggacccaggcatagcatcagctgttcc 1212
to top
>dbj|AK070022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036C24, full
            insert sequence
          Length = 3235

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Minus

                                                                        
Query: 134  tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 193
            ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 2799 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 2740

                                                         
Query: 194  ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 237
            || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 2739 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 2696



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                        
Query: 348  cagggatatcacctgtaagagtcctgaatgcaaattccaggcatgggtctgaccagatac 407
            ||||||| ||||||| ||||||| |||  ||||| |  |||||||| |||||||||||||
Sbjct: 2615 cagggatgtcacctgcaagagtcttgatcgcaaacttgaggcatggatctgaccagatac 2556

                                                             
Query: 408  ttcggaacagcgatgacagggaatatccgggcatagcatcagctgttcc 456
            |||| || | |||||| ||||   | || ||||||||||||||||||||
Sbjct: 2555 ttcgcaataacgatgaaagggcggacccaggcatagcatcagctgttcc 2507



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 8    caacaagacacagtctttattgaaacatgcatccttgttaaggtacc 54
            |||||||| ||||||||| ||| ||||||||||||||| ||||||||
Sbjct: 2932 caacaagatacagtctttcttgcaacatgcatccttgtcaaggtacc 2886
to top
>dbj|AK060828.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C01, full
            insert sequence
          Length = 1535

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Minus

                                                                        
Query: 134  tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 193
            ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 1081 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 1022

                                                         
Query: 194  ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 237
            || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 1021 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 978



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                       
Query: 348 cagggatatcacctgtaagagtcctgaatgcaaattccaggcatgggtctgaccagatac 407
           ||||||| ||||||| ||||||| |||  ||||| |  |||||||| |||||||||||||
Sbjct: 897 cagggatgtcacctgcaagagtcttgatcgcaaacttgaggcatggatctgaccagatac 838

                                                            
Query: 408 ttcggaacagcgatgacagggaatatccgggcatagcatcagctgttcc 456
           |||| || | |||||| ||||   | || ||||||||||||||||||||
Sbjct: 837 ttcgcaataacgatgaaagggcggacccaggcatagcatcagctgttcc 789



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 8    caacaagacacagtctttattgaaacatgcatccttgttaaggtacc 54
            |||||||| ||||||||| ||| ||||||||||||||| ||||||||
Sbjct: 1214 caacaagatacagtctttcttgcaacatgcatccttgtcaaggtacc 1168
to top
>ref|XM_473874.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1317

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 75/85 (88%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 154  ctggggagggaaccagccactgctgtagagcctatctgatggtcttggcattggc-tgcc 212
            ||||||||| ||||||||||||| ||||| | |||||||||| |||||||||||| ||||
Sbjct: 1182 ctggggaggaaaccagccactgccgtagaacttatctgatggccttggcattggcatgcc 1123

                                     
Query: 213  tgacaaggtcgacttggccatggtt 237
             |||| ||||||||||  |||||||
Sbjct: 1122 -gacatggtcgacttgcgcatggtt 1099



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                        
Query: 348  cagggatatcacctgtaagagtcctgaatgcaaattccaggcatgggtctgaccagatac 407
            ||||||| ||||||| ||||||| |||  ||||| |  |||||||| |||||||||||||
Sbjct: 1018 cagggatgtcacctgcaagagtcttgatcgcaaacttgaggcatggatctgaccagatac 959

                                                             
Query: 408  ttcggaacagcgatgacagggaatatccgggcatagcatcagctgttcc 456
            |||| || | |||||| ||||   | || ||||||||||||||||||||
Sbjct: 958  ttcgcaataacgatgaaagggcggacccaggcatagcatcagctgttcc 910
to top
>gb|AC116035.2| Homo sapiens chromosome 3 clone RP11-261F17, complete sequence
          Length = 170258

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 379    aaattccaggcatgggtctga 399
              |||||||||||||||||||||
Sbjct: 126739 aaattccaggcatgggtctga 126719
to top
>dbj|AK054505.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330033N02
           product:unclassifiable, full insert sequence
          Length = 3452

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 157 gggagggaaccagccactgct 177
           |||||||||||||||||||||
Sbjct: 304 gggagggaaccagccactgct 324
to top
>emb|AL845445.14| Mouse DNA sequence from clone RP23-380B10 on chromosome 2, complete
              sequence
          Length = 126636

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 223    gacttggccatggttcttcct 243
              |||||||||||||||||||||
Sbjct: 101471 gacttggccatggttcttcct 101451
to top
>gb|AC084323.28| Mus musculus strain C57BL/6J chromosome 2 clone rp23-403l21, complete
             sequence
          Length = 188905

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 223   gacttggccatggttcttcct 243
             |||||||||||||||||||||
Sbjct: 58330 gacttggccatggttcttcct 58310
to top
>gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, complete sequence
          Length = 152106

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   cctgtggtggaaggaagtag 319
             ||||||||||||||||||||
Sbjct: 18316 cctgtggtggaaggaagtag 18335
to top
>ref|XM_951814.1| Neurospora crassa OR74A hypothetical protein ( (AL513408) conserved
            hypothetical protein [Neurospora crassa OR74A] )
            (NCU01701.1) partial mRNA
          Length = 1872

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  ttggcattggctgcctgaca 217
            ||||||||||||||||||||
Sbjct: 1536 ttggcattggctgcctgaca 1517
to top
>ref|XM_328139.1| Neurospora crassa OR74A hypothetical protein (NCU01701.1) partial
            mRNA
          Length = 1872

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  ttggcattggctgcctgaca 217
            ||||||||||||||||||||
Sbjct: 1536 ttggcattggctgcctgaca 1517
to top
>gb|AC151324.2| Xenopus tropicalis clone ISB-266M19, complete sequence
          Length = 72079

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ttatttgcatttgggcagtt 126
             ||||||||||||||||||||
Sbjct: 65143 ttatttgcatttgggcagtt 65162
to top
>emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, complete sequence
          Length = 195301

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 225    cttggccatggttcttcctagcac 248
              |||||||||| |||||||||||||
Sbjct: 106901 cttggccatgtttcttcctagcac 106924
to top
>ref|XM_445027.1| Candida glabrata CBS138, CAGL0B01331g partial mRNA
          Length = 621

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gtcctgtggtggaaggaagt 317
           ||||||||||||||||||||
Sbjct: 246 gtcctgtggtggaaggaagt 227
to top
>emb|CR380948.1| Candida glabrata strain CBS138 chromosome B complete sequence
          Length = 502101

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    gtcctgtggtggaaggaagt 317
              ||||||||||||||||||||
Sbjct: 119893 gtcctgtggtggaaggaagt 119874
to top
>emb|AL513408.1|NC61D6 Neurospora crassa DNA linkage group II Cosmid clone 61D6
          Length = 38848

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   ttggcattggctgcctgaca 217
             ||||||||||||||||||||
Sbjct: 18416 ttggcattggctgcctgaca 18435
to top
>gb|AC079257.7| Homo sapiens BAC clone RP11-367I6 from 4, complete sequence
          Length = 133401

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   tggccatggttcttcctagc 246
             ||||||||||||||||||||
Sbjct: 26970 tggccatggttcttcctagc 26951
to top
>gb|AC096506.5| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120135

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 225   cttggccatggttcttcctagcac 248
             |||||||||| |||||||||||||
Sbjct: 10454 cttggccatgtttcttcctagcac 10431
to top
>gb|AC020732.4|AC020732 Homo sapiens BAC clone RP11-556H16 from X, complete sequence
          Length = 181559

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 225  cttggccatggttcttcctagcac 248
            |||||||||| |||||||||||||
Sbjct: 8454 cttggccatgtttcttcctagcac 8431
to top
>gb|AC151318.2| Xenopus tropicalis clone ISB-241L4, complete sequence
          Length = 71260

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   ttatttgcatttgggcagtt 126
             ||||||||||||||||||||
Sbjct: 35766 ttatttgcatttgggcagtt 35747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,599,170
Number of Sequences: 3902068
Number of extensions: 3599170
Number of successful extensions: 70512
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70452
Number of HSP's gapped (non-prelim): 54
length of query: 546
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 523
effective length of database: 17,143,297,704
effective search space: 8965944699192
effective search space used: 8965944699192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top