ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23g16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 100 4e-21
2CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 94 2e-19
3CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC... 34 0.24
4CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC... 32 1.2
5KPRS_BACSU (P14193) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 6.0
6SYH_SYMTH (Q67LN9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 29 7.8
7CARB_THET2 (P96495) Carbamoyl-phosphate synthase large chain (EC... 29 7.8
8FTHS_THEMA (Q9X287) Formate--tetrahydrofolate ligase (EC 6.3.4.3... 29 7.8

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
 Frame = -1

Query: 491 YRALWARYSRVIDYVNFQFYGYGANTDVQTYVMFYDRQTGYYPGAKVLASLQTGKTTEEL 312
           Y+ALW +Y   IDYVNFQFY Y A T V+ ++ +++ Q+  Y G KVL S     +T+  
Sbjct: 194 YQALWEKYGHQIDYVNFQFYAYSARTSVEQFLKYFEEQSSNYHGGKVLVSF----STDSS 249

Query: 311 GLLSPDQGIAAAKELL-RQNKLPGFFIWSADSSXQSDYKFTYETRAQEIVAN 159
           G L PD G   A  +L +Q KL G F+WSAD S  S+  F YE +AQ ++A+
Sbjct: 250 GGLKPDNGFFRACSILKKQGKLHGIFVWSADDSLMSNNVFRYEMQAQSMLAS 301



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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
 Frame = -1

Query: 491 YRALWARYSRVIDYVNFQFYGYGANTDVQTYVMFYDRQTGYYPGAKVLASLQTGKTTEEL 312
           Y+ALW +Y   IDYVNFQFY Y +   V+ ++ +++ Q   YPG KVL S     +T+  
Sbjct: 168 YQALWEKYGHQIDYVNFQFYVYSSRMSVEQFLKYFEMQRSNYPGGKVLVSF----STDNS 223

Query: 311 GLLSPDQGIAAAKELL-RQNKLPGFFIWSADSSXQSDYKFTYETRAQEIVAN 159
           G L P  G   A  +L +Q KL G F+WSAD S  S+  F YE +AQ ++A+
Sbjct: 224 GGLKPRNGFFDACSILKKQGKLHGIFVWSADDSLMSNDVFKYEMQAQSLLAS 275



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>CARB_SYNY3 (Q55756) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1081

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
 Frame = -1

Query: 476  ARYSRVIDYVNFQFYGYG-------ANTDVQTYVMFYDRQTGYYPGAKVLASLQTGKTTE 318
            AR   V+  +N Q+   G       AN      V +  + TG  P AK+ + + +GKT E
Sbjct: 825  ARALNVVGLMNIQYAVQGDQVYILEANPRASRTVPYVSKATGR-PLAKIASLVMSGKTLE 883

Query: 317  ELGLLSP--DQGIAAAKELLRQNKLPG 243
            ELG+      Q +A  + +L  +K PG
Sbjct: 884  ELGVTEEFIPQHVAVKEAVLPFSKFPG 910



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>CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1104

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -1

Query: 440  QFYGYGANTDVQTYVMFYDRQTGYYPGAKVLASLQTGKTTEELGLLSP--DQGIAAAKEL 267
            Q Y   AN      V F  + TG  P AK+ + + +GKT EEL          IA  + +
Sbjct: 866  QVYILEANPRASRTVPFVSKATGV-PLAKLASLIMSGKTLEELNFTQEVIPSHIAVKEAV 924

Query: 266  LRQNKLPG 243
            L  NK PG
Sbjct: 925  LPFNKFPG 932



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>KPRS_BACSU (P14193) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 317

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 392 FYDRQTGYYPGAKVLASLQTGKTTEELGLLSPDQ-GIAAAKELLRQNKLP 246
           F+D    +  G  +L     GK  E++ ++SPD  G+  A++L  + K P
Sbjct: 143 FFDIPIDHLMGVPILGEYFEGKNLEDIVIVSPDHGGVTRARKLADRLKAP 192



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>SYH_SYMTH (Q67LN9) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 432

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 461 VIDYVNFQFYGYGANTDVQTYVMFYDRQTGYYPGAKVLA 345
           +++YV+   +G GA TD+ T  MF     G  P A+ +A
Sbjct: 49  MVEYVDLFIHGVGATTDIVTKEMFNITPRGDDPDARRMA 87



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>CARB_THET2 (P96495) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1028

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 449  VNFQFYGYGANTDVQTYVMFYDRQTGYYPGAKVLASLQTGKTTEELGL--LSPDQGIAAA 276
            V  + Y   AN      V F  +  G  P AK+ A +  GKT +ELG+  L P     AA
Sbjct: 829  VGEEVYVLEANPRASRTVPFVSKAIGV-PLAKLAALIAVGKTLKELGVRDLDPVPPYYAA 887

Query: 275  KELL 264
            KE++
Sbjct: 888  KEVV 891



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>FTHS_THEMA (Q9X287) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 542

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 431 GYGANTDVQTYVMFYDRQTGYYPGAKVLAS 342
           G+GA+   + ++ F  R  G+YP A VL +
Sbjct: 288 GFGADLGAEKFIDFVSRVGGFYPNAAVLVA 317


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,001,023
Number of Sequences: 219361
Number of extensions: 905612
Number of successful extensions: 2182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2180
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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