ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23g13 |
|---|---|
| Clone Library Name | barley_pub |
>SAC3_YEAST (P46674) Leucine permease transcriptional regulator| Length = 1301 Score = 33.5 bits (75), Expect = 0.37 Identities = 27/95 (28%), Positives = 44/95 (46%) Frame = -2 Query: 468 DVPSDAAHHKGYKITKQGKYMARIGWEQTVYQKPSVESYQTASMDIDGEKDSDIDTSSAN 289 D S+ +H YK+T++GKY ++T+ QK S+ + S + KD D Sbjct: 1065 DKLSEISHSYVYKLTERGKY------DKTLRQKRSLAGIHSRSTQLQTTKDID---QKMK 1115 Query: 288 DLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTP 184 +L K K Y ++ GE Y L + +I +P Sbjct: 1116 KMLEKE---KNKYQQQIGERNTYAHL-ESHIDASP 1146
>SURE_THEMA (P96112) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 247 Score = 32.7 bits (73), Expect = 0.64 Identities = 25/101 (24%), Positives = 44/101 (43%) Frame = -2 Query: 483 SFLNIDVPSDAAHHKGYKITKQGKYMARIGWEQTVYQKPSVESYQTASMDIDGEKDSDID 304 + LNI+VP A KG++ T+Q + +E+ V P E Y ++ + D D Sbjct: 159 TMLNINVP--AGEIKGWRFTRQSRRRWNDYFEERV--SPFGEKYYWMMGEVIEDDDRD-- 212 Query: 303 TSSANDLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTPL 181 D+DYK++ +GY+++TP+ Sbjct: 213 ------------------------DVDYKAVREGYVSITPI 229
>SURE_EHRRW (Q5HBM5) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 252 Score = 30.4 bits (67), Expect = 3.2 Identities = 28/105 (26%), Positives = 47/105 (44%) Frame = -2 Query: 495 YXKGSFLNIDVPSDAAHHKGYKITKQGKYMARIGWEQTVYQKPSVESYQTASMDIDGEKD 316 + K + +N++ P A KG K T QGKY+ P E EK+ Sbjct: 158 WNKSTVMNVNFPLMPA--KGIKFTDQGKYV------------PCNEI----------EKN 193 Query: 315 SDIDTSSANDLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTPL 181 D S+ + + + K++ + +G K++ +GYIT+TPL Sbjct: 194 ESSDDSNVSYTITRITPNKKNRAQCDGS---IKAIDEGYITITPL 235
>SURE_EHRRG (Q5FHG1) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 252 Score = 30.4 bits (67), Expect = 3.2 Identities = 28/105 (26%), Positives = 47/105 (44%) Frame = -2 Query: 495 YXKGSFLNIDVPSDAAHHKGYKITKQGKYMARIGWEQTVYQKPSVESYQTASMDIDGEKD 316 + K + +N++ P A KG K T QGKY+ P E EK+ Sbjct: 158 WNKSTVMNVNFPLMPA--KGIKFTDQGKYV------------PCNEI----------EKN 193 Query: 315 SDIDTSSANDLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTPL 181 D S+ + + + K++ + +G K++ +GYIT+TPL Sbjct: 194 ESSDDSNVSYTITRITPNKKNRAQCDGS---IKAIDEGYITITPL 235
>BACC_BACLI (O68008) Bacitracin synthetase 3 (BA3) [Includes: ATP-dependent| isoleucine adenylase (IleA) (Isoleucine activase); ATP-dependent D-phenylalanine adenylase (D-PheA) (D-phenylalanine activase); ATP-dependent histidine adenylase (HisA) (Histidine Length = 6359 Score = 29.6 bits (65), Expect = 5.4 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = -2 Query: 354 YQTASMDIDGEKDSDIDTSSANDLLFKRVIVKRSYDEEEGED 229 +Q MDI+G D I +S ND++ + I++ SY+ E E+ Sbjct: 2568 FQQTVMDIEGYVDPAILEASFNDIMKRHEILRASYEYEIVEE 2609
>SURE_SYNAS (Q2LUH7) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 266 Score = 29.6 bits (65), Expect = 5.4 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Frame = -2 Query: 489 KGSFLNIDVPSDAAHH-KGYKITKQGKYMARIGWEQTVYQKPSVESYQTASMDIDGEKDS 313 K LNI+VP+ KGY +T+QGK AR+ +ES+ D Sbjct: 157 KSVALNINVPALPVQDIKGYAVTRQGK--ARL-----------IESF-----------DR 192 Query: 312 DIDTSSANDLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTPL 181 +D + L+ + + E+E D D +L+ G I++TP+ Sbjct: 193 RVDP---RERLYYWLAGETQLSEQEEPDSDGSALSRGMISITPI 233
>RPOB_MYCGA (P47715) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1390 Score = 29.6 bits (65), Expect = 5.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 345 ASMDIDGEKDSDIDTSSANDLLFKRVI 265 A D + + DSD+ T S+NDL K VI Sbjct: 558 ADQDAENDPDSDLGTKSSNDLTVKSVI 584
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 29.3 bits (64), Expect = 7.1 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -2 Query: 327 GEKDSDIDTSSANDLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTPLGA 175 GE + D D + +D++ S DEEEG++ D K + D +T L A Sbjct: 494 GEDEDDEDGDADSDIM--------SSDEEEGDEEDQKDIGDENLTQEQLRA 536
>MDN1_GIALA (Q8T5T1) Midasin (MIDAS-containing protein)| Length = 4835 Score = 29.3 bits (64), Expect = 7.1 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = +1 Query: 349 LVTFYRRLLVDCLLPSNSGHIFSLLCNFVSLVVCSIRRHIYIQ 477 L T + + +LP H+F +L + +C+I HI++Q Sbjct: 148 LSTIVKSMFYPLVLPPLGNHLFQVLTKHCNRGICTILAHIHVQ 190
>SURE_HAEIN (P45681) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 249 Score = 29.3 bits (64), Expect = 7.1 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 1/114 (0%) Frame = -2 Query: 477 LNIDVPSDAAHH-KGYKITKQGKYMARIGWEQTVYQKPSVESYQTASMDIDGEKDSDIDT 301 +NI+VP KGYK+ + G Y+++S+++ ++D +T Sbjct: 155 ININVPDLPFEELKGYKVCRLG--------------------YRSSSVEVIKQRDPRDET 194 Query: 300 SSANDLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTPLGALSRAEADVIPYY 139 I + E+E E D+ ++ +GY+++TP+ +AD+ Y+ Sbjct: 195 IYW--------IGPSALPEDESEGTDFYAVKNGYVSITPI------QADLTAYH 234
>SURE_HAEI8 (Q4QML8) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 249 Score = 29.3 bits (64), Expect = 7.1 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 1/114 (0%) Frame = -2 Query: 477 LNIDVPSDAAHH-KGYKITKQGKYMARIGWEQTVYQKPSVESYQTASMDIDGEKDSDIDT 301 +NI+VP KGYK+ + G Y+ +S ++ +KD +T Sbjct: 155 ININVPDLLFEELKGYKVCRLG--------------------YRASSAEVIKQKDPRDET 194 Query: 300 SSANDLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTPLGALSRAEADVIPYY 139 I + E+E E D+ ++ +GY+++TP+ +AD+ Y+ Sbjct: 195 IYW--------IGPSALPEDESEGTDFYAVKNGYVSITPI------QADLTAYH 234
>YG3R_YEAST (P53288) Hypothetical 22.2 kDa protein in NSR1-TIF4631 intergenic| region Length = 203 Score = 28.9 bits (63), Expect = 9.2 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = -2 Query: 360 ESYQTASMDIDGEKDSDIDTSSANDLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTPL 181 E + S D D ++DSD D+ S +D DE+E ED D + + + + L Sbjct: 127 EEEDSESEDEDEDEDSDSDSDSDSDS-----------DEDEDEDEDSEEEEETALAFSSL 175 Query: 180 GALSRAEADVIPY 142 L + ++P+ Sbjct: 176 ACLEALTSFLLPF 188
>ECR_HELVI (O18473) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) (HvEcR) Length = 576 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = -2 Query: 420 QGKYMARIGWEQTVYQKPSVESYQTASMDIDGEKDSDI 307 Q +AR+ W Q Y++PS E + + + ++DSD+ Sbjct: 315 QKSLIARLVWYQEGYEQPSEEDLKRVTQSDEDDEDSDM 352
>DBP4_CANAL (Q5AF95) ATP-dependent RNA helicase DBP4 (EC 3.6.1.-)| Length = 765 Score = 28.9 bits (63), Expect = 9.2 Identities = 25/111 (22%), Positives = 45/111 (40%) Frame = -2 Query: 507 KSGTYXKGSFLNIDVPSDAAHHKGYKITKQGKYMARIGWEQTVYQKPSVESYQTASMDID 328 K+ KG+ + D H Y++ + ++ ++ QK + + +M I Sbjct: 601 KATLASKGNPTKLKFDDDGVAHAIYELEDEDDFIKAGDAKK---QKEEFVNKERETMKIS 657 Query: 327 GEKDSDIDTSSANDLLFKRVIVKRSYDEEEGEDMDYKSLADGYITVTPLGA 175 D +++ + KR ++R EEE ED D + TV LGA Sbjct: 658 DITDKEVERQKRQEKKRKRKEIERRMREEEEEDFDNEQ------TVVTLGA 702
>SURE_THIDA (Q3SKJ3) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 247 Score = 28.9 bits (63), Expect = 9.2 Identities = 9/22 (40%), Positives = 18/22 (81%) Frame = -2 Query: 246 EEEGEDMDYKSLADGYITVTPL 181 ++ GE D+ ++A+GY+++TPL Sbjct: 207 QDAGEGTDFHAVANGYVSITPL 228 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,413,283 Number of Sequences: 219361 Number of extensions: 1551579 Number of successful extensions: 4236 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4235 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
