ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23g13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_477061.1| Oryza sativa (japonica cultivar-group), mRNA 375 e-100
2ref|XM_506219.1| PREDICTED Oryza sativa (japonica cultivar-group... 375 e-100
3dbj|AK102805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 375 e-100
4dbj|AK058694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 375 e-100
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
6dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic D... 184 2e-43
7dbj|AB227114.1| Aspergillus oryzae cDNA, contig sequence: AoEST3976 44 0.46
8gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complet... 44 0.46
9gb|BC045225.1| Xenopus laevis hypothetical protein MGC53118, mRN... 42 1.8
10gb|AY894291.1| Phalaropus tricolor NADH dehydrogenase subunit 1 ... 42 1.8
11gb|AY894289.1| Xenus cinereus NADH dehydrogenase subunit 1 (ND1)... 42 1.8
12emb|AL451054.22| Human DNA sequence from clone RP11-275O4 on chr... 42 1.8
13dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 42 1.8
14gb|AC097502.3| Homo sapiens BAC clone RP11-340B18 from 4, comple... 42 1.8
15gb|AY568121.1| Melopsittacus undulatus clone 04EE32 microsatelli... 42 1.8
16ref|NM_117579.3| Arabidopsis thaliana acid phosphatase AT4G14930... 40 7.2
17ref|NM_104611.1| Arabidopsis thaliana unknown protein AT1G58310 ... 40 7.2
18gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
19ref|XM_638843.1| Dictyostelium discoideum hypothetical protein (... 40 7.2
20gb|AC160986.5| Mus musculus BAC clone RP23-258K21 from chromosom... 40 7.2
21ref|XM_520170.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 7.2
22gb|AC102517.7| Mus musculus chromosome 5, clone RP24-491H24, com... 40 7.2
23gb|AC116452.9| Mus musculus chromosome 1, clone RP24-287C2, comp... 40 7.2
24gb|AC127756.4| Rattus norvegicus 16 BAC CH230-166D23 (Children's... 40 7.2
25gb|AC124361.4| Mus musculus BAC clone RP24-528I8 from chromosome... 40 7.2
26ref|XM_452381.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C04125g ... 40 7.2
27ref|NM_021224.3| Homo sapiens zinc finger protein 462 (ZNF462), ... 40 7.2
28gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
29gb|AC140347.3| Mus musculus BAC clone RP23-233K3 from chromosome... 40 7.2
30gb|AC004458.1| Homo sapiens BAC clone CTB-57J11 from 7, complete... 40 7.2
31gb|AC124185.3| Mus musculus BAC clone RP23-230F5 from 1, complet... 40 7.2
32emb|Z82205.1|HS363L9 Human DNA sequence from clone RP3-363L9 on ... 40 7.2
33emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chr... 40 7.2
34emb|AL158200.17| Human DNA sequence from clone RP11-278E11 on ch... 40 7.2
35emb|AL050305.9|HSDA60B16 Human DNA sequence from clone RP6-60B16... 40 7.2
36emb|AL049642.5|HSDJ685D6 Human DNA sequence from clone RP4-685D6... 40 7.2
37gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Ca... 40 7.2
38emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 7.2
39emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chrom... 40 7.2
40gb|BT008714.1| Arabidopsis thaliana At4g14930 gene, complete cds 40 7.2
41emb|BX648965.1|HSM809116 Homo sapiens mRNA; cDNA DKFZp686L2367 (... 40 7.2
42emb|CR749850.1| Homo sapiens mRNA; cDNA DKFZp686B2325 (from clon... 40 7.2
43gb|AC016017.14| Mus Musculus Strain C57BL6/J Chromosome 6 BAC Cl... 40 7.2
44dbj|AK127803.1| Homo sapiens cDNA FLJ45904 fis, clone OCBBF3026361 40 7.2
45dbj|AK222038.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 7.2
46gb|AC154911.4| Mus musculus BAC clone RP23-25I3 from chromosome ... 40 7.2
47gb|AC026222.5| Homo sapiens chromosome 12 clone RP11-543D1, comp... 40 7.2
48gb|AF339161.1|AF339161 Tupaia glis mannose-6-phosphate/insulin-l... 40 7.2
49dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
50emb|BX826446.1|CNS0A3B2 Arabidopsis thaliana Full-length cDNA Co... 40 7.2
51emb|BX841589.1|CNS09YGI Arabidopsis thaliana Full-length cDNA Co... 40 7.2
52gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041... 40 7.2
53gb|AC007220.4|AC007220 Homo sapiens chromosome 16 clone RP11-396... 40 7.2
54gb|AC009224.6| Homo sapiens BAC clone RP11-92G23 from 2, complet... 40 7.2
55gb|AY087729.1| Arabidopsis thaliana clone 38042 mRNA, complete s... 40 7.2
56gb|BT002501.1| Arabidopsis thaliana expressed protein (At4g14930... 40 7.2
57gb|AC015799.23| Homo sapiens chromosome 17, clone RP11-135N5, co... 40 7.2
58gb|AC008051.3|F19C14 Sequence of BAC F19C14 from Arabidopsis tha... 40 7.2
59gb|AC166336.15| Mus musculus chromosome 1, clone RP24-74G12, com... 40 7.2
60gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 40 7.2
61gb|AC003670.1|AC003670 Homo sapiens 12q13.1 PAC RPCI1-130F5 (Ros... 40 7.2
62gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, c... 40 7.2

>ref|XM_477061.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1145

 Score =  375 bits (189), Expect = e-100
 Identities = 353/408 (86%)
 Strand = Plus / Minus

                                                                       
Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184
           ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 910 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 851

                                                                       
Query: 185 ggagtaacagtaatatatccatctgctagggatttgtagtccatgtcttccccttcctct 244
           || ||||||||||||||||||||| | ||| | |||| ||| || || ||||||||||||
Sbjct: 850 ggggtaacagtaatatatccatctacaaggcacttgtggtcgatatcatccccttcctct 791

                                                                       
Query: 245 tcatcataacttctctttactatcactcttttaaacagtaggtcatttgccgatgaagta 304
           ||||||||||||| | | || | |||||||||||||| |||||||||  | |||||||||
Sbjct: 790 tcatcataacttcgcctcacaagcactcttttaaacaataggtcattctctgatgaagta 731

                                                                       
Query: 305 tctatatcgctgtccttttcaccgtcaatatccatgcttgccgtctggtaactttctaca 364
           ||||  || ||||||||||||| ||||| ||||||| |||| ||||||||||||||||| 
Sbjct: 730 tctacttcactgtccttttcactgtcaacatccatgtttgctgtctggtaactttctacc 671

                                                                       
Query: 365 gaaggcttttggtagactgtttgctcccatccaattctggccatatattttccttgcttt 424
           | |||||| |  || |||||||||||||| |||||||||||||||||  |||||||||||
Sbjct: 670 gcaggcttcttataaactgtttgctcccaaccaattctggccatataccttccttgcttt 611

                                                                       
Query: 425 gtaattttgtatcccttgtggtgtgcagcatcagacggcacatctatattcaggaatgat 484
           ||||||||||||||||||||||||||||||||||  || | ||||||||||| |||||||
Sbjct: 610 gtaattttgtatcccttgtggtgtgcagcatcagttggtatatctatattcaagaatgat 551

                                                           
Query: 485 cctttanggtaggttccactcttgatctcaaccatgacagcatttatc 532
           |||| | | || || ||| |||| |||||| |||| |||  |||||||
Sbjct: 550 ccttgaggatatgtcccattctttatctcagccatcacattatttatc 503



to top

>ref|XM_506219.1| PREDICTED Oryza sativa (japonica cultivar-group), P0431A02.28 mRNA
          Length = 1199

 Score =  375 bits (189), Expect = e-100
 Identities = 353/408 (86%)
 Strand = Plus / Minus

                                                                       
Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184
           ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 945 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 886

                                                                       
Query: 185 ggagtaacagtaatatatccatctgctagggatttgtagtccatgtcttccccttcctct 244
           || ||||||||||||||||||||| | ||| | |||| ||| || || ||||||||||||
Sbjct: 885 ggggtaacagtaatatatccatctacaaggcacttgtggtcgatatcatccccttcctct 826

                                                                       
Query: 245 tcatcataacttctctttactatcactcttttaaacagtaggtcatttgccgatgaagta 304
           ||||||||||||| | | || | |||||||||||||| |||||||||  | |||||||||
Sbjct: 825 tcatcataacttcgcctcacaagcactcttttaaacaataggtcattctctgatgaagta 766

                                                                       
Query: 305 tctatatcgctgtccttttcaccgtcaatatccatgcttgccgtctggtaactttctaca 364
           ||||  || ||||||||||||| ||||| ||||||| |||| ||||||||||||||||| 
Sbjct: 765 tctacttcactgtccttttcactgtcaacatccatgtttgctgtctggtaactttctacc 706

                                                                       
Query: 365 gaaggcttttggtagactgtttgctcccatccaattctggccatatattttccttgcttt 424
           | |||||| |  || |||||||||||||| |||||||||||||||||  |||||||||||
Sbjct: 705 gcaggcttcttataaactgtttgctcccaaccaattctggccatataccttccttgcttt 646

                                                                       
Query: 425 gtaattttgtatcccttgtggtgtgcagcatcagacggcacatctatattcaggaatgat 484
           ||||||||||||||||||||||||||||||||||  || | ||||||||||| |||||||
Sbjct: 645 gtaattttgtatcccttgtggtgtgcagcatcagttggtatatctatattcaagaatgat 586

                                                           
Query: 485 cctttanggtaggttccactcttgatctcaaccatgacagcatttatc 532
           |||| | | || || ||| |||| |||||| |||| |||  |||||||
Sbjct: 585 ccttgaggatatgtcccattctttatctcagccatcacattatttatc 538



to top

>dbj|AK102805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108H16, full
           insert sequence
          Length = 1145

 Score =  375 bits (189), Expect = e-100
 Identities = 353/408 (86%)
 Strand = Plus / Minus

                                                                       
Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184
           ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 910 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 851

                                                                       
Query: 185 ggagtaacagtaatatatccatctgctagggatttgtagtccatgtcttccccttcctct 244
           || ||||||||||||||||||||| | ||| | |||| ||| || || ||||||||||||
Sbjct: 850 ggggtaacagtaatatatccatctacaaggcacttgtggtcgatatcatccccttcctct 791

                                                                       
Query: 245 tcatcataacttctctttactatcactcttttaaacagtaggtcatttgccgatgaagta 304
           ||||||||||||| | | || | |||||||||||||| |||||||||  | |||||||||
Sbjct: 790 tcatcataacttcgcctcacaagcactcttttaaacaataggtcattctctgatgaagta 731

                                                                       
Query: 305 tctatatcgctgtccttttcaccgtcaatatccatgcttgccgtctggtaactttctaca 364
           ||||  || ||||||||||||| ||||| ||||||| |||| ||||||||||||||||| 
Sbjct: 730 tctacttcactgtccttttcactgtcaacatccatgtttgctgtctggtaactttctacc 671

                                                                       
Query: 365 gaaggcttttggtagactgtttgctcccatccaattctggccatatattttccttgcttt 424
           | |||||| |  || |||||||||||||| |||||||||||||||||  |||||||||||
Sbjct: 670 gcaggcttcttataaactgtttgctcccaaccaattctggccatataccttccttgcttt 611

                                                                       
Query: 425 gtaattttgtatcccttgtggtgtgcagcatcagacggcacatctatattcaggaatgat 484
           ||||||||||||||||||||||||||||||||||  || | ||||||||||| |||||||
Sbjct: 610 gtaattttgtatcccttgtggtgtgcagcatcagttggtatatctatattcaagaatgat 551

                                                           
Query: 485 cctttanggtaggttccactcttgatctcaaccatgacagcatttatc 532
           |||| | | || || ||| |||| |||||| |||| |||  |||||||
Sbjct: 550 ccttgaggatatgtcccattctttatctcagccatcacattatttatc 503



to top

>dbj|AK058694.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B07, full
           insert sequence
          Length = 1199

 Score =  375 bits (189), Expect = e-100
 Identities = 353/408 (86%)
 Strand = Plus / Minus

                                                                       
Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184
           ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 945 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 886

                                                                       
Query: 185 ggagtaacagtaatatatccatctgctagggatttgtagtccatgtcttccccttcctct 244
           || ||||||||||||||||||||| | ||| | |||| ||| || || ||||||||||||
Sbjct: 885 ggggtaacagtaatatatccatctacaaggcacttgtggtcgatatcatccccttcctct 826

                                                                       
Query: 245 tcatcataacttctctttactatcactcttttaaacagtaggtcatttgccgatgaagta 304
           ||||||||||||| | | || | |||||||||||||| |||||||||  | |||||||||
Sbjct: 825 tcatcataacttcgcctcacaagcactcttttaaacaataggtcattctctgatgaagta 766

                                                                       
Query: 305 tctatatcgctgtccttttcaccgtcaatatccatgcttgccgtctggtaactttctaca 364
           ||||  || ||||||||||||| ||||| ||||||| |||| ||||||||||||||||| 
Sbjct: 765 tctacttcactgtccttttcactgtcaacatccatgtttgctgtctggtaactttctacc 706

                                                                       
Query: 365 gaaggcttttggtagactgtttgctcccatccaattctggccatatattttccttgcttt 424
           | |||||| |  || |||||||||||||| |||||||||||||||||  |||||||||||
Sbjct: 705 gcaggcttcttataaactgtttgctcccaaccaattctggccatataccttccttgcttt 646

                                                                       
Query: 425 gtaattttgtatcccttgtggtgtgcagcatcagacggcacatctatattcaggaatgat 484
           ||||||||||||||||||||||||||||||||||  || | ||||||||||| |||||||
Sbjct: 645 gtaattttgtatcccttgtggtgtgcagcatcagttggtatatctatattcaagaatgat 586

                                                           
Query: 485 cctttanggtaggttccactcttgatctcaaccatgacagcatttatc 532
           |||| | | || || ||| |||| |||||| |||| |||  |||||||
Sbjct: 585 ccttgaggatatgtcccattctttatctcagccatcacattatttatc 538



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  184 bits (93), Expect = 2e-43
 Identities = 153/173 (88%)
 Strand = Plus / Plus

                                                                           
Query: 268     cactcttttaaacagtaggtcatttgccgatgaagtatctatatcgctgtccttttcacc 327
               |||||||||||||| |||||||||  | |||||||||||||  || ||||||||||||| 
Sbjct: 5652487 cactcttttaaacaataggtcattctctgatgaagtatctacttcactgtccttttcact 5652546

                                                                           
Query: 328     gtcaatatccatgcttgccgtctggtaactttctacagaaggcttttggtagactgtttg 387
               ||||| ||||||| |||| ||||||||||||||||| | |||||| |  || ||||||||
Sbjct: 5652547 gtcaacatccatgtttgctgtctggtaactttctaccgcaggcttcttataaactgtttg 5652606

                                                                    
Query: 388     ctcccatccaattctggccatatattttccttgctttgtaattttgtatccct 440
               |||||| |||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 5652607 ctcccaaccaattctggccatataccttccttgctttgtaattttgtatccct 5652659



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                           
Query: 125     gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184
               ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 5651807 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 5651866

                             
Query: 185     ggagtaacagtaat 198
               || |||||||||||
Sbjct: 5651867 ggggtaacagtaat 5651880



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                           
Query: 438     ccttgtggtgtgcagcatcagacggcacatctatattcaggaatgatcctttanggtagg 497
               |||||||||||||||||||||  || | ||||||||||| ||||||||||| | | || |
Sbjct: 5652745 ccttgtggtgtgcagcatcagttggtatatctatattcaagaatgatccttgaggatatg 5652804

                                                  
Query: 498     ttccactcttgatctcaaccatgacagcatttatc 532
               | ||| |||| |||||| |||| |||  |||||||
Sbjct: 5652805 tcccattctttatctcagccatcacattatttatc 5652839



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                          
Query: 199     atatccatctgctagggatttgtagtccatgtcttccccttcctcttcatcataacttc 257
               |||||||||| | ||| | |||| ||| || || |||||||||||||||||||||||||
Sbjct: 5651987 atatccatctacaaggcacttgtggtcgatatcatccccttcctcttcatcataacttc 5652045



to top

>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0431A02
          Length = 165038

 Score =  184 bits (93), Expect = 2e-43
 Identities = 153/173 (88%)
 Strand = Plus / Plus

                                                                          
Query: 268    cactcttttaaacagtaggtcatttgccgatgaagtatctatatcgctgtccttttcacc 327
              |||||||||||||| |||||||||  | |||||||||||||  || ||||||||||||| 
Sbjct: 114179 cactcttttaaacaataggtcattctctgatgaagtatctacttcactgtccttttcact 114238

                                                                          
Query: 328    gtcaatatccatgcttgccgtctggtaactttctacagaaggcttttggtagactgtttg 387
              ||||| ||||||| |||| ||||||||||||||||| | |||||| |  || ||||||||
Sbjct: 114239 gtcaacatccatgtttgctgtctggtaactttctaccgcaggcttcttataaactgtttg 114298

                                                                   
Query: 388    ctcccatccaattctggccatatattttccttgctttgtaattttgtatccct 440
              |||||| |||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 114299 ctcccaaccaattctggccatataccttccttgctttgtaattttgtatccct 114351



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                          
Query: 125    gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184
              ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 113499 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 113558

                            
Query: 185    ggagtaacagtaat 198
              || |||||||||||
Sbjct: 113559 ggggtaacagtaat 113572



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                          
Query: 438    ccttgtggtgtgcagcatcagacggcacatctatattcaggaatgatcctttanggtagg 497
              |||||||||||||||||||||  || | ||||||||||| ||||||||||| | | || |
Sbjct: 114437 ccttgtggtgtgcagcatcagttggtatatctatattcaagaatgatccttgaggatatg 114496

                                                 
Query: 498    ttccactcttgatctcaaccatgacagcatttatc 532
              | ||| |||| |||||| |||| |||  |||||||
Sbjct: 114497 tcccattctttatctcagccatcacattatttatc 114531



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                         
Query: 199    atatccatctgctagggatttgtagtccatgtcttccccttcctcttcatcataacttc 257
              |||||||||| | ||| | |||| ||| || || |||||||||||||||||||||||||
Sbjct: 113679 atatccatctacaaggcacttgtggtcgatatcatccccttcctcttcatcataacttc 113737



to top

>dbj|AB227114.1| Aspergillus oryzae cDNA, contig sequence: AoEST3976
          Length = 860

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 233 tccccttcctcttcatcataacttctcttt 262
           |||||||||||||||||||  |||||||||
Sbjct: 524 tccccttcctcttcatcatctcttctcttt 495



to top

>gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complete sequence
          Length = 181952

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 255   ttctctttactatcactctttt 276
             ||||||||||||||||||||||
Sbjct: 27094 ttctctttactatcactctttt 27115



to top

>gb|BC045225.1| Xenopus laevis hypothetical protein MGC53118, mRNA (cDNA clone
            MGC:53118 IMAGE:5542476), complete cds
          Length = 3177

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 231  cttccccttcctcttcatcat 251
            |||||||||||||||||||||
Sbjct: 2316 cttccccttcctcttcatcat 2296



to top

>gb|AY894291.1| Phalaropus tricolor NADH dehydrogenase subunit 1 (ND1) gene,
           partial cds; and tRNA-Ile gene, partial sequence;
           mitochondrial
          Length = 967

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 ccccttcctcttcatcataac 254
           |||||||||||||||||||||
Sbjct: 150 ccccttcctcttcatcataac 170



to top

>gb|AY894289.1| Xenus cinereus NADH dehydrogenase subunit 1 (ND1) gene, partial
           cds; and tRNA-Ile gene, complete sequence; mitochondrial
          Length = 976

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 234 ccccttcctcttcatcataac 254
           |||||||||||||||||||||
Sbjct: 150 ccccttcctcttcatcataac 170



to top

>emb|AL451054.22| Human DNA sequence from clone RP11-275O4 on chromosome 1 Contains two
             tubulin beta pseudogenes, a novel gene, the 5' end of a
             novel protein (MGC42493) and four CpG islands, complete
             sequence
          Length = 147567

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 189   taacagtaatatatccatctg 209
             |||||||||||||||||||||
Sbjct: 98436 taacagtaatatatccatctg 98456



to top

>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 233    tccccttcctcttcatcataacttctctt 261
              |||||||||||||||||||  ||||||||
Sbjct: 502253 tccccttcctcttcatcatctcttctctt 502225



to top

>gb|AC097502.3| Homo sapiens BAC clone RP11-340B18 from 4, complete sequence
          Length = 168254

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 328    gtcaatatccatgcttgccgtctgg 352
              |||||||||||||||||| ||||||
Sbjct: 166132 gtcaatatccatgcttgctgtctgg 166108



to top

>gb|AY568121.1| Melopsittacus undulatus clone 04EE32 microsatellite sequence
          Length = 293

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 gtcttccccttcctcttcatc 249
           |||||||||||||||||||||
Sbjct: 84  gtcttccccttcctcttcatc 64



to top

>ref|NM_117579.3| Arabidopsis thaliana acid phosphatase AT4G14930 mRNA, complete cds
          Length = 1887

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477
           |||||||||||||||||  |||  ||||| ||||| ||| ||||||||
Sbjct: 848 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 801



to top

>ref|NM_104611.1| Arabidopsis thaliana unknown protein AT1G58310 mRNA, complete cds
          Length = 1518

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  aggaagatgaacatcttcaa 118
           ||||||||||||||||||||
Sbjct: 531 aggaagatgaacatcttcaa 512



to top

>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0048I21, complete sequence
          Length = 137650

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   ttgtggtgtgcagcatcaga 459
             ||||||||||||||||||||
Sbjct: 23711 ttgtggtgtgcagcatcaga 23692



to top

>ref|XM_638843.1| Dictyostelium discoideum hypothetical protein (DDB0220625), partial
            mRNA
          Length = 2505

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 230  tcttccccttcctcttcatcataa 253
            |||||| |||||||||||||||||
Sbjct: 2102 tcttcctcttcctcttcatcataa 2079



to top

>gb|AC160986.5| Mus musculus BAC clone RP23-258K21 from chromosome 6, complete sequence
          Length = 209886

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    tgtcttccccttcctcttca 247
              ||||||||||||||||||||
Sbjct: 165198 tgtcttccccttcctcttca 165179



to top

>ref|XM_520170.1| PREDICTED: Pan troglodytes similar to hypothetical protein
            (LOC464637), mRNA
          Length = 7563

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 228  tgtcttccccttcctcttcatcat 251
            |||||||| |||||||||||||||
Sbjct: 1774 tgtcttcctcttcctcttcatcat 1751



to top

>gb|AC102517.7| Mus musculus chromosome 5, clone RP24-491H24, complete sequence
          Length = 186022

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  tcttccccttcctcttcatc 249
            ||||||||||||||||||||
Sbjct: 9530 tcttccccttcctcttcatc 9549



to top

>gb|AC116452.9| Mus musculus chromosome 1, clone RP24-287C2, complete sequence
          Length = 171792

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   ttccccttcctcttcatcat 251
             ||||||||||||||||||||
Sbjct: 88559 ttccccttcctcttcatcat 88578



to top

>gb|AC127756.4| Rattus norvegicus 16 BAC CH230-166D23 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 176794

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    tcttccccttcctcttcatc 249
              ||||||||||||||||||||
Sbjct: 159050 tcttccccttcctcttcatc 159031



to top

>gb|AC124361.4| Mus musculus BAC clone RP24-528I8 from chromosome 1, complete sequence
          Length = 172848

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   tctggccatatattttcctt 419
             ||||||||||||||||||||
Sbjct: 58009 tctggccatatattttcctt 57990



to top

>ref|XM_452381.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C04125g predicted mRNA
          Length = 1275

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 tgaagtatctatatcgctgt 317
           ||||||||||||||||||||
Sbjct: 531 tgaagtatctatatcgctgt 512



to top

>ref|NM_021224.3| Homo sapiens zinc finger protein 462 (ZNF462), mRNA
          Length = 8310

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 228  tgtcttccccttcctcttcatcat 251
            |||||||| |||||||||||||||
Sbjct: 2477 tgtcttcctcttcctcttcatcat 2454



to top

>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09,
              complete sequence
          Length = 177374

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    ttgtggtgtgcagcatcaga 459
              ||||||||||||||||||||
Sbjct: 152734 ttgtggtgtgcagcatcaga 152715



to top

>gb|AC140347.3| Mus musculus BAC clone RP23-233K3 from chromosome 7, complete sequence
          Length = 153366

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    atgaggaagatgaacatctt 115
             ||||||||||||||||||||
Sbjct: 45953 atgaggaagatgaacatctt 45972



to top

>gb|AC004458.1| Homo sapiens BAC clone CTB-57J11 from 7, complete sequence
          Length = 168056

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 395    ccaattctggccatatattttcct 418
              |||||||||||||| |||||||||
Sbjct: 138506 ccaattctggccatttattttcct 138529



to top

>gb|AC124185.3| Mus musculus BAC clone RP23-230F5 from 1, complete sequence
          Length = 195372

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   ttccccttcctcttcatcat 251
             ||||||||||||||||||||
Sbjct: 11243 ttccccttcctcttcatcat 11224



to top

>emb|Z82205.1|HS363L9 Human DNA sequence from clone RP3-363L9 on chromosome X Contains a
              N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae) (NAT5)
              pseudogene, complete sequence
          Length = 125971

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    tcttccccttcctcttcatc 249
              ||||||||||||||||||||
Sbjct: 107088 tcttccccttcctcttcatc 107069



to top

>emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chromosome 9 Contains two
             novel genes, the gene for a novel zinc finger protein
             (FLJ14960, KIAA1803), a ribosomal protein L7a (RPL7A)
             pseudogene and the 3' end of a novel gene, complete
             sequence
          Length = 148816

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 228   tgtcttccccttcctcttcatcat 251
             |||||||| |||||||||||||||
Sbjct: 47974 tgtcttcctcttcctcttcatcat 47951



to top

>emb|AL158200.17| Human DNA sequence from clone RP11-278E11 on chromosome Xp11.21-11.22
             Contains a novel gene and the gene for a novel protein
             similar to ubiquinol-cytochrome c reductase binding
             protein (UQCRB), complete sequence
          Length = 87538

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    agggatgaggaagatgaaca 111
             ||||||||||||||||||||
Sbjct: 42182 agggatgaggaagatgaaca 42163



to top

>emb|AL050305.9|HSDA60B16 Human DNA sequence from clone RP6-60B16 on chromosome Xp11.21-22.2
              Contains the 5' end of one variant of the DMD gene for
              dystrophin (muscular dystrophy, Duchenne and Becker types),
              and a lysosomal-associated membrane protein 1 (LAMP1)
              pseudogene, complete sequence
          Length = 139258

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    agccttgtagtagggtatga 152
              ||||||||||||||||||||
Sbjct: 130322 agccttgtagtagggtatga 130303



to top

>emb|AL049642.5|HSDJ685D6 Human DNA sequence from clone RP4-685D6 on chromosome Xq21.1-21.33,
             complete sequence
          Length = 125487

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   tttgtagtccatgtcttccc 236
             ||||||||||||||||||||
Sbjct: 52523 tttgtagtccatgtcttccc 52504



to top

>gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 192046

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   catatattttccttgctttg 425
             ||||||||||||||||||||
Sbjct: 32150 catatattttccttgctttg 32169



to top

>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    tgaagtatctatatcgctgt 317
              ||||||||||||||||||||
Sbjct: 376238 tgaagtatctatatcgctgt 376219



to top

>emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4
          Length = 347050

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   atattttccttgctttgtaa 428
             ||||||||||||||||||||
Sbjct: 55422 atattttccttgctttgtaa 55403



to top

>gb|BT008714.1| Arabidopsis thaliana At4g14930 gene, complete cds
          Length = 948

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477
           |||||||||||||||||  |||  ||||| ||||| ||| ||||||||
Sbjct: 603 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 556



to top

>emb|BX648965.1|HSM809116 Homo sapiens mRNA; cDNA DKFZp686L2367 (from clone DKFZp686L2367)
          Length = 8310

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 228  tgtcttccccttcctcttcatcat 251
            |||||||| |||||||||||||||
Sbjct: 2477 tgtcttcctcttcctcttcatcat 2454



to top

>emb|CR749850.1| Homo sapiens mRNA; cDNA DKFZp686B2325 (from clone DKFZp686B2325)
          Length = 7801

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 228  tgtcttccccttcctcttcatcat 251
            |||||||| |||||||||||||||
Sbjct: 1879 tgtcttcctcttcctcttcatcat 1856



to top

>gb|AC016017.14| Mus Musculus Strain C57BL6/J Chromosome 6 BAC Clone RP23-274F23, complete
              sequence
          Length = 184892

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    tgtcttccccttcctcttca 247
              ||||||||||||||||||||
Sbjct: 166966 tgtcttccccttcctcttca 166985



to top

>dbj|AK127803.1| Homo sapiens cDNA FLJ45904 fis, clone OCBBF3026361
          Length = 3475

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 228  tgtcttccccttcctcttcatcat 251
            |||||||| |||||||||||||||
Sbjct: 2473 tgtcttcctcttcctcttcatcat 2450



to top

>dbj|AK222038.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-74-H12
          Length = 708

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477
           |||||||||||||||||  |||  ||||| ||||| ||| ||||||||
Sbjct: 126 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 79



to top

>gb|AC154911.4| Mus musculus BAC clone RP23-25I3 from chromosome 7, complete sequence
          Length = 228885

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     atgaggaagatgaacatctt 115
              ||||||||||||||||||||
Sbjct: 151366 atgaggaagatgaacatctt 151385



to top

>gb|AC026222.5| Homo sapiens chromosome 12 clone RP11-543D1, complete sequence
          Length = 168085

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   catatattttccttgctttg 425
             ||||||||||||||||||||
Sbjct: 21890 catatattttccttgctttg 21871



to top

>gb|AF339161.1|AF339161 Tupaia glis mannose-6-phosphate/insulin-like growth factor II
            receptor (m6p/igf2r) mRNA, partial cds
          Length = 7274

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  tgtcttccccttcctcttca 247
            ||||||||||||||||||||
Sbjct: 5550 tgtcttccccttcctcttca 5569



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 440      ttgtggtgtgcagcatcaga 459
                ||||||||||||||||||||
Sbjct: 20896933 ttgtggtgtgcagcatcaga 20896914



to top

>emb|BX826446.1|CNS0A3B2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB27ZD09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1267

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477
           |||||||||||||||||  |||  ||||| ||||| ||| ||||||||
Sbjct: 775 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 728



to top

>emb|BX841589.1|CNS09YGI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL36ZD02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1042

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477
           |||||||||||||||||  |||  ||||| ||||| ||| ||||||||
Sbjct: 635 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 588



to top

>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
              complete sequence
          Length = 333321

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 230    tcttccccttcctcttcatcataa 253
              |||||| |||||||||||||||||
Sbjct: 179923 tcttcctcttcctcttcatcataa 179900



to top

>gb|AC007220.4|AC007220 Homo sapiens chromosome 16 clone RP11-396B14, complete sequence
          Length = 172945

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    tcttccccttcctcttcatc 249
              ||||||||||||||||||||
Sbjct: 107071 tcttccccttcctcttcatc 107090



to top

>gb|AC009224.6| Homo sapiens BAC clone RP11-92G23 from 2, complete sequence
          Length = 144784

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    atgtcttccccttcctcttc 246
              ||||||||||||||||||||
Sbjct: 143823 atgtcttccccttcctcttc 143842



to top

>gb|AY087729.1| Arabidopsis thaliana clone 38042 mRNA, complete sequence
          Length = 1291

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477
           |||||||||||||||||  |||  ||||| ||||| ||| ||||||||
Sbjct: 766 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 719



to top

>gb|BT002501.1| Arabidopsis thaliana expressed protein (At4g14930) mRNA, complete
           cds
          Length = 1195

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477
           |||||||||||||||||  |||  ||||| ||||| ||| ||||||||
Sbjct: 698 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 651



to top

>gb|AC015799.23| Homo sapiens chromosome 17, clone RP11-135N5, complete sequence
          Length = 180157

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tcttccccttcctcttcatc 249
             ||||||||||||||||||||
Sbjct: 84721 tcttccccttcctcttcatc 84740



to top

>gb|AC008051.3|F19C14 Sequence of BAC F19C14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 86014

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aggaagatgaacatcttcaa 118
             ||||||||||||||||||||
Sbjct: 57397 aggaagatgaacatcttcaa 57416



to top

>gb|AC166336.15| Mus musculus chromosome 1, clone RP24-74G12, complete sequence
          Length = 215765

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    tctggccatatattttcctt 419
              ||||||||||||||||||||
Sbjct: 127200 tctggccatatattttcctt 127181



to top

>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 404     gccatatattttccttgctt 423
               ||||||||||||||||||||
Sbjct: 1643598 gccatatattttccttgctt 1643617



to top

>gb|AC003670.1|AC003670 Homo sapiens 12q13.1 PAC RPCI1-130F5 (Roswell Park Cancer Institute
             Human PAC library) complete sequence
          Length = 88945

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   catatattttccttgctttg 425
             ||||||||||||||||||||
Sbjct: 16841 catatattttccttgctttg 16822



to top

>gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, complete sequence
          Length = 195319

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tcttccccttcctcttcatc 249
             ||||||||||||||||||||
Sbjct: 90182 tcttccccttcctcttcatc 90201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,558,950
Number of Sequences: 3902068
Number of extensions: 5558950
Number of successful extensions: 101357
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101133
Number of HSP's gapped (non-prelim): 224
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top