Clone Name | rbasd23g13 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477061.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1145 Score = 375 bits (189), Expect = e-100 Identities = 353/408 (86%) Strand = Plus / Minus Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184 ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct: 910 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 851 Query: 185 ggagtaacagtaatatatccatctgctagggatttgtagtccatgtcttccccttcctct 244 || ||||||||||||||||||||| | ||| | |||| ||| || || |||||||||||| Sbjct: 850 ggggtaacagtaatatatccatctacaaggcacttgtggtcgatatcatccccttcctct 791 Query: 245 tcatcataacttctctttactatcactcttttaaacagtaggtcatttgccgatgaagta 304 ||||||||||||| | | || | |||||||||||||| ||||||||| | ||||||||| Sbjct: 790 tcatcataacttcgcctcacaagcactcttttaaacaataggtcattctctgatgaagta 731 Query: 305 tctatatcgctgtccttttcaccgtcaatatccatgcttgccgtctggtaactttctaca 364 |||| || ||||||||||||| ||||| ||||||| |||| ||||||||||||||||| Sbjct: 730 tctacttcactgtccttttcactgtcaacatccatgtttgctgtctggtaactttctacc 671 Query: 365 gaaggcttttggtagactgtttgctcccatccaattctggccatatattttccttgcttt 424 | |||||| | || |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 670 gcaggcttcttataaactgtttgctcccaaccaattctggccatataccttccttgcttt 611 Query: 425 gtaattttgtatcccttgtggtgtgcagcatcagacggcacatctatattcaggaatgat 484 |||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||| Sbjct: 610 gtaattttgtatcccttgtggtgtgcagcatcagttggtatatctatattcaagaatgat 551 Query: 485 cctttanggtaggttccactcttgatctcaaccatgacagcatttatc 532 |||| | | || || ||| |||| |||||| |||| ||| ||||||| Sbjct: 550 ccttgaggatatgtcccattctttatctcagccatcacattatttatc 503
>ref|XM_506219.1| PREDICTED Oryza sativa (japonica cultivar-group), P0431A02.28 mRNA Length = 1199 Score = 375 bits (189), Expect = e-100 Identities = 353/408 (86%) Strand = Plus / Minus Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184 ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct: 945 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 886 Query: 185 ggagtaacagtaatatatccatctgctagggatttgtagtccatgtcttccccttcctct 244 || ||||||||||||||||||||| | ||| | |||| ||| || || |||||||||||| Sbjct: 885 ggggtaacagtaatatatccatctacaaggcacttgtggtcgatatcatccccttcctct 826 Query: 245 tcatcataacttctctttactatcactcttttaaacagtaggtcatttgccgatgaagta 304 ||||||||||||| | | || | |||||||||||||| ||||||||| | ||||||||| Sbjct: 825 tcatcataacttcgcctcacaagcactcttttaaacaataggtcattctctgatgaagta 766 Query: 305 tctatatcgctgtccttttcaccgtcaatatccatgcttgccgtctggtaactttctaca 364 |||| || ||||||||||||| ||||| ||||||| |||| ||||||||||||||||| Sbjct: 765 tctacttcactgtccttttcactgtcaacatccatgtttgctgtctggtaactttctacc 706 Query: 365 gaaggcttttggtagactgtttgctcccatccaattctggccatatattttccttgcttt 424 | |||||| | || |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 705 gcaggcttcttataaactgtttgctcccaaccaattctggccatataccttccttgcttt 646 Query: 425 gtaattttgtatcccttgtggtgtgcagcatcagacggcacatctatattcaggaatgat 484 |||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||| Sbjct: 645 gtaattttgtatcccttgtggtgtgcagcatcagttggtatatctatattcaagaatgat 586 Query: 485 cctttanggtaggttccactcttgatctcaaccatgacagcatttatc 532 |||| | | || || ||| |||| |||||| |||| ||| ||||||| Sbjct: 585 ccttgaggatatgtcccattctttatctcagccatcacattatttatc 538
>dbj|AK102805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108H16, full insert sequence Length = 1145 Score = 375 bits (189), Expect = e-100 Identities = 353/408 (86%) Strand = Plus / Minus Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184 ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct: 910 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 851 Query: 185 ggagtaacagtaatatatccatctgctagggatttgtagtccatgtcttccccttcctct 244 || ||||||||||||||||||||| | ||| | |||| ||| || || |||||||||||| Sbjct: 850 ggggtaacagtaatatatccatctacaaggcacttgtggtcgatatcatccccttcctct 791 Query: 245 tcatcataacttctctttactatcactcttttaaacagtaggtcatttgccgatgaagta 304 ||||||||||||| | | || | |||||||||||||| ||||||||| | ||||||||| Sbjct: 790 tcatcataacttcgcctcacaagcactcttttaaacaataggtcattctctgatgaagta 731 Query: 305 tctatatcgctgtccttttcaccgtcaatatccatgcttgccgtctggtaactttctaca 364 |||| || ||||||||||||| ||||| ||||||| |||| ||||||||||||||||| Sbjct: 730 tctacttcactgtccttttcactgtcaacatccatgtttgctgtctggtaactttctacc 671 Query: 365 gaaggcttttggtagactgtttgctcccatccaattctggccatatattttccttgcttt 424 | |||||| | || |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 670 gcaggcttcttataaactgtttgctcccaaccaattctggccatataccttccttgcttt 611 Query: 425 gtaattttgtatcccttgtggtgtgcagcatcagacggcacatctatattcaggaatgat 484 |||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||| Sbjct: 610 gtaattttgtatcccttgtggtgtgcagcatcagttggtatatctatattcaagaatgat 551 Query: 485 cctttanggtaggttccactcttgatctcaaccatgacagcatttatc 532 |||| | | || || ||| |||| |||||| |||| ||| ||||||| Sbjct: 550 ccttgaggatatgtcccattctttatctcagccatcacattatttatc 503
>dbj|AK058694.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B07, full insert sequence Length = 1199 Score = 375 bits (189), Expect = e-100 Identities = 353/408 (86%) Strand = Plus / Minus Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184 ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct: 945 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 886 Query: 185 ggagtaacagtaatatatccatctgctagggatttgtagtccatgtcttccccttcctct 244 || ||||||||||||||||||||| | ||| | |||| ||| || || |||||||||||| Sbjct: 885 ggggtaacagtaatatatccatctacaaggcacttgtggtcgatatcatccccttcctct 826 Query: 245 tcatcataacttctctttactatcactcttttaaacagtaggtcatttgccgatgaagta 304 ||||||||||||| | | || | |||||||||||||| ||||||||| | ||||||||| Sbjct: 825 tcatcataacttcgcctcacaagcactcttttaaacaataggtcattctctgatgaagta 766 Query: 305 tctatatcgctgtccttttcaccgtcaatatccatgcttgccgtctggtaactttctaca 364 |||| || ||||||||||||| ||||| ||||||| |||| ||||||||||||||||| Sbjct: 765 tctacttcactgtccttttcactgtcaacatccatgtttgctgtctggtaactttctacc 706 Query: 365 gaaggcttttggtagactgtttgctcccatccaattctggccatatattttccttgcttt 424 | |||||| | || |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 705 gcaggcttcttataaactgtttgctcccaaccaattctggccatataccttccttgcttt 646 Query: 425 gtaattttgtatcccttgtggtgtgcagcatcagacggcacatctatattcaggaatgat 484 |||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||| Sbjct: 645 gtaattttgtatcccttgtggtgtgcagcatcagttggtatatctatattcaagaatgat 586 Query: 485 cctttanggtaggttccactcttgatctcaaccatgacagcatttatc 532 |||| | | || || ||| |||| |||||| |||| ||| ||||||| Sbjct: 585 ccttgaggatatgtcccattctttatctcagccatcacattatttatc 538
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 184 bits (93), Expect = 2e-43 Identities = 153/173 (88%) Strand = Plus / Plus Query: 268 cactcttttaaacagtaggtcatttgccgatgaagtatctatatcgctgtccttttcacc 327 |||||||||||||| ||||||||| | ||||||||||||| || ||||||||||||| Sbjct: 5652487 cactcttttaaacaataggtcattctctgatgaagtatctacttcactgtccttttcact 5652546 Query: 328 gtcaatatccatgcttgccgtctggtaactttctacagaaggcttttggtagactgtttg 387 ||||| ||||||| |||| ||||||||||||||||| | |||||| | || |||||||| Sbjct: 5652547 gtcaacatccatgtttgctgtctggtaactttctaccgcaggcttcttataaactgtttg 5652606 Query: 388 ctcccatccaattctggccatatattttccttgctttgtaattttgtatccct 440 |||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 5652607 ctcccaaccaattctggccatataccttccttgctttgtaattttgtatccct 5652659 Score = 99.6 bits (50), Expect = 9e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184 ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct: 5651807 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 5651866 Query: 185 ggagtaacagtaat 198 || ||||||||||| Sbjct: 5651867 ggggtaacagtaat 5651880 Score = 63.9 bits (32), Expect = 5e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 438 ccttgtggtgtgcagcatcagacggcacatctatattcaggaatgatcctttanggtagg 497 ||||||||||||||||||||| || | ||||||||||| ||||||||||| | | || | Sbjct: 5652745 ccttgtggtgtgcagcatcagttggtatatctatattcaagaatgatccttgaggatatg 5652804 Query: 498 ttccactcttgatctcaaccatgacagcatttatc 532 | ||| |||| |||||| |||| ||| ||||||| Sbjct: 5652805 tcccattctttatctcagccatcacattatttatc 5652839 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 199 atatccatctgctagggatttgtagtccatgtcttccccttcctcttcatcataacttc 257 |||||||||| | ||| | |||| ||| || || ||||||||||||||||||||||||| Sbjct: 5651987 atatccatctacaaggcacttgtggtcgatatcatccccttcctcttcatcataacttc 5652045
>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0431A02 Length = 165038 Score = 184 bits (93), Expect = 2e-43 Identities = 153/173 (88%) Strand = Plus / Plus Query: 268 cactcttttaaacagtaggtcatttgccgatgaagtatctatatcgctgtccttttcacc 327 |||||||||||||| ||||||||| | ||||||||||||| || ||||||||||||| Sbjct: 114179 cactcttttaaacaataggtcattctctgatgaagtatctacttcactgtccttttcact 114238 Query: 328 gtcaatatccatgcttgccgtctggtaactttctacagaaggcttttggtagactgtttg 387 ||||| ||||||| |||| ||||||||||||||||| | |||||| | || |||||||| Sbjct: 114239 gtcaacatccatgtttgctgtctggtaactttctaccgcaggcttcttataaactgtttg 114298 Query: 388 ctcccatccaattctggccatatattttccttgctttgtaattttgtatccct 440 |||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 114299 ctcccaaccaattctggccatataccttccttgctttgtaattttgtatccct 114351 Score = 99.6 bits (50), Expect = 9e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 125 gacaagcaagccttgtagtagggtatgacatctgcttctgcgcgggagagagcacccaaa 184 ||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||| Sbjct: 113499 gacaagcaagctttgtagtatggtatgacatcagcttctgcgcgggatagagctcccaaa 113558 Query: 185 ggagtaacagtaat 198 || ||||||||||| Sbjct: 113559 ggggtaacagtaat 113572 Score = 63.9 bits (32), Expect = 5e-07 Identities = 79/95 (83%) Strand = Plus / Plus Query: 438 ccttgtggtgtgcagcatcagacggcacatctatattcaggaatgatcctttanggtagg 497 ||||||||||||||||||||| || | ||||||||||| ||||||||||| | | || | Sbjct: 114437 ccttgtggtgtgcagcatcagttggtatatctatattcaagaatgatccttgaggatatg 114496 Query: 498 ttccactcttgatctcaaccatgacagcatttatc 532 | ||| |||| |||||| |||| ||| ||||||| Sbjct: 114497 tcccattctttatctcagccatcacattatttatc 114531 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 199 atatccatctgctagggatttgtagtccatgtcttccccttcctcttcatcataacttc 257 |||||||||| | ||| | |||| ||| || || ||||||||||||||||||||||||| Sbjct: 113679 atatccatctacaaggcacttgtggtcgatatcatccccttcctcttcatcataacttc 113737
>dbj|AB227114.1| Aspergillus oryzae cDNA, contig sequence: AoEST3976 Length = 860 Score = 44.1 bits (22), Expect = 0.46 Identities = 28/30 (93%) Strand = Plus / Minus Query: 233 tccccttcctcttcatcataacttctcttt 262 ||||||||||||||||||| ||||||||| Sbjct: 524 tccccttcctcttcatcatctcttctcttt 495
>gb|AC017053.8| Homo sapiens BAC clone RP11-339D8 from 2, complete sequence Length = 181952 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 ttctctttactatcactctttt 276 |||||||||||||||||||||| Sbjct: 27094 ttctctttactatcactctttt 27115
>gb|BC045225.1| Xenopus laevis hypothetical protein MGC53118, mRNA (cDNA clone MGC:53118 IMAGE:5542476), complete cds Length = 3177 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 231 cttccccttcctcttcatcat 251 ||||||||||||||||||||| Sbjct: 2316 cttccccttcctcttcatcat 2296
>gb|AY894291.1| Phalaropus tricolor NADH dehydrogenase subunit 1 (ND1) gene, partial cds; and tRNA-Ile gene, partial sequence; mitochondrial Length = 967 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 ccccttcctcttcatcataac 254 ||||||||||||||||||||| Sbjct: 150 ccccttcctcttcatcataac 170
>gb|AY894289.1| Xenus cinereus NADH dehydrogenase subunit 1 (ND1) gene, partial cds; and tRNA-Ile gene, complete sequence; mitochondrial Length = 976 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 ccccttcctcttcatcataac 254 ||||||||||||||||||||| Sbjct: 150 ccccttcctcttcatcataac 170
>emb|AL451054.22| Human DNA sequence from clone RP11-275O4 on chromosome 1 Contains two tubulin beta pseudogenes, a novel gene, the 5' end of a novel protein (MGC42493) and four CpG islands, complete sequence Length = 147567 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 taacagtaatatatccatctg 209 ||||||||||||||||||||| Sbjct: 98436 taacagtaatatatccatctg 98456
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 tccccttcctcttcatcataacttctctt 261 ||||||||||||||||||| |||||||| Sbjct: 502253 tccccttcctcttcatcatctcttctctt 502225
>gb|AC097502.3| Homo sapiens BAC clone RP11-340B18 from 4, complete sequence Length = 168254 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 gtcaatatccatgcttgccgtctgg 352 |||||||||||||||||| |||||| Sbjct: 166132 gtcaatatccatgcttgctgtctgg 166108
>gb|AY568121.1| Melopsittacus undulatus clone 04EE32 microsatellite sequence Length = 293 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 229 gtcttccccttcctcttcatc 249 ||||||||||||||||||||| Sbjct: 84 gtcttccccttcctcttcatc 64
>ref|NM_117579.3| Arabidopsis thaliana acid phosphatase AT4G14930 mRNA, complete cds Length = 1887 Score = 40.1 bits (20), Expect = 7.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477 ||||||||||||||||| ||| ||||| ||||| ||| |||||||| Sbjct: 848 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 801
>ref|NM_104611.1| Arabidopsis thaliana unknown protein AT1G58310 mRNA, complete cds Length = 1518 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 aggaagatgaacatcttcaa 118 |||||||||||||||||||| Sbjct: 531 aggaagatgaacatcttcaa 512
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ttgtggtgtgcagcatcaga 459 |||||||||||||||||||| Sbjct: 23711 ttgtggtgtgcagcatcaga 23692
>ref|XM_638843.1| Dictyostelium discoideum hypothetical protein (DDB0220625), partial mRNA Length = 2505 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 tcttccccttcctcttcatcataa 253 |||||| ||||||||||||||||| Sbjct: 2102 tcttcctcttcctcttcatcataa 2079
>gb|AC160986.5| Mus musculus BAC clone RP23-258K21 from chromosome 6, complete sequence Length = 209886 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tgtcttccccttcctcttca 247 |||||||||||||||||||| Sbjct: 165198 tgtcttccccttcctcttca 165179
>ref|XM_520170.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC464637), mRNA Length = 7563 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 tgtcttccccttcctcttcatcat 251 |||||||| ||||||||||||||| Sbjct: 1774 tgtcttcctcttcctcttcatcat 1751
>gb|AC102517.7| Mus musculus chromosome 5, clone RP24-491H24, complete sequence Length = 186022 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tcttccccttcctcttcatc 249 |||||||||||||||||||| Sbjct: 9530 tcttccccttcctcttcatc 9549
>gb|AC116452.9| Mus musculus chromosome 1, clone RP24-287C2, complete sequence Length = 171792 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ttccccttcctcttcatcat 251 |||||||||||||||||||| Sbjct: 88559 ttccccttcctcttcatcat 88578
>gb|AC127756.4| Rattus norvegicus 16 BAC CH230-166D23 (Children's Hospital Oakland Research Institute) complete sequence Length = 176794 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcttccccttcctcttcatc 249 |||||||||||||||||||| Sbjct: 159050 tcttccccttcctcttcatc 159031
>gb|AC124361.4| Mus musculus BAC clone RP24-528I8 from chromosome 1, complete sequence Length = 172848 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tctggccatatattttcctt 419 |||||||||||||||||||| Sbjct: 58009 tctggccatatattttcctt 57990
>ref|XM_452381.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C04125g predicted mRNA Length = 1275 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 tgaagtatctatatcgctgt 317 |||||||||||||||||||| Sbjct: 531 tgaagtatctatatcgctgt 512
>ref|NM_021224.3| Homo sapiens zinc finger protein 462 (ZNF462), mRNA Length = 8310 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 tgtcttccccttcctcttcatcat 251 |||||||| ||||||||||||||| Sbjct: 2477 tgtcttcctcttcctcttcatcat 2454
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ttgtggtgtgcagcatcaga 459 |||||||||||||||||||| Sbjct: 152734 ttgtggtgtgcagcatcaga 152715
>gb|AC140347.3| Mus musculus BAC clone RP23-233K3 from chromosome 7, complete sequence Length = 153366 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 atgaggaagatgaacatctt 115 |||||||||||||||||||| Sbjct: 45953 atgaggaagatgaacatctt 45972
>gb|AC004458.1| Homo sapiens BAC clone CTB-57J11 from 7, complete sequence Length = 168056 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 ccaattctggccatatattttcct 418 |||||||||||||| ||||||||| Sbjct: 138506 ccaattctggccatttattttcct 138529
>gb|AC124185.3| Mus musculus BAC clone RP23-230F5 from 1, complete sequence Length = 195372 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ttccccttcctcttcatcat 251 |||||||||||||||||||| Sbjct: 11243 ttccccttcctcttcatcat 11224
>emb|Z82205.1|HS363L9 Human DNA sequence from clone RP3-363L9 on chromosome X Contains a N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae) (NAT5) pseudogene, complete sequence Length = 125971 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tcttccccttcctcttcatc 249 |||||||||||||||||||| Sbjct: 107088 tcttccccttcctcttcatc 107069
>emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chromosome 9 Contains two novel genes, the gene for a novel zinc finger protein (FLJ14960, KIAA1803), a ribosomal protein L7a (RPL7A) pseudogene and the 3' end of a novel gene, complete sequence Length = 148816 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 tgtcttccccttcctcttcatcat 251 |||||||| ||||||||||||||| Sbjct: 47974 tgtcttcctcttcctcttcatcat 47951
>emb|AL158200.17| Human DNA sequence from clone RP11-278E11 on chromosome Xp11.21-11.22 Contains a novel gene and the gene for a novel protein similar to ubiquinol-cytochrome c reductase binding protein (UQCRB), complete sequence Length = 87538 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 agggatgaggaagatgaaca 111 |||||||||||||||||||| Sbjct: 42182 agggatgaggaagatgaaca 42163
>emb|AL050305.9|HSDA60B16 Human DNA sequence from clone RP6-60B16 on chromosome Xp11.21-22.2 Contains the 5' end of one variant of the DMD gene for dystrophin (muscular dystrophy, Duchenne and Becker types), and a lysosomal-associated membrane protein 1 (LAMP1) pseudogene, complete sequence Length = 139258 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 agccttgtagtagggtatga 152 |||||||||||||||||||| Sbjct: 130322 agccttgtagtagggtatga 130303
>emb|AL049642.5|HSDJ685D6 Human DNA sequence from clone RP4-685D6 on chromosome Xq21.1-21.33, complete sequence Length = 125487 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tttgtagtccatgtcttccc 236 |||||||||||||||||||| Sbjct: 52523 tttgtagtccatgtcttccc 52504
>gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192046 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 catatattttccttgctttg 425 |||||||||||||||||||| Sbjct: 32150 catatattttccttgctttg 32169
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 tgaagtatctatatcgctgt 317 |||||||||||||||||||| Sbjct: 376238 tgaagtatctatatcgctgt 376219
>emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4 Length = 347050 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 atattttccttgctttgtaa 428 |||||||||||||||||||| Sbjct: 55422 atattttccttgctttgtaa 55403
>gb|BT008714.1| Arabidopsis thaliana At4g14930 gene, complete cds Length = 948 Score = 40.1 bits (20), Expect = 7.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477 ||||||||||||||||| ||| ||||| ||||| ||| |||||||| Sbjct: 603 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 556
>emb|BX648965.1|HSM809116 Homo sapiens mRNA; cDNA DKFZp686L2367 (from clone DKFZp686L2367) Length = 8310 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 tgtcttccccttcctcttcatcat 251 |||||||| ||||||||||||||| Sbjct: 2477 tgtcttcctcttcctcttcatcat 2454
>emb|CR749850.1| Homo sapiens mRNA; cDNA DKFZp686B2325 (from clone DKFZp686B2325) Length = 7801 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 tgtcttccccttcctcttcatcat 251 |||||||| ||||||||||||||| Sbjct: 1879 tgtcttcctcttcctcttcatcat 1856
>gb|AC016017.14| Mus Musculus Strain C57BL6/J Chromosome 6 BAC Clone RP23-274F23, complete sequence Length = 184892 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tgtcttccccttcctcttca 247 |||||||||||||||||||| Sbjct: 166966 tgtcttccccttcctcttca 166985
>dbj|AK127803.1| Homo sapiens cDNA FLJ45904 fis, clone OCBBF3026361 Length = 3475 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 tgtcttccccttcctcttcatcat 251 |||||||| ||||||||||||||| Sbjct: 2473 tgtcttcctcttcctcttcatcat 2450
>dbj|AK222038.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-74-H12 Length = 708 Score = 40.1 bits (20), Expect = 7.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477 ||||||||||||||||| ||| ||||| ||||| ||| |||||||| Sbjct: 126 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 79
>gb|AC154911.4| Mus musculus BAC clone RP23-25I3 from chromosome 7, complete sequence Length = 228885 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 atgaggaagatgaacatctt 115 |||||||||||||||||||| Sbjct: 151366 atgaggaagatgaacatctt 151385
>gb|AC026222.5| Homo sapiens chromosome 12 clone RP11-543D1, complete sequence Length = 168085 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 catatattttccttgctttg 425 |||||||||||||||||||| Sbjct: 21890 catatattttccttgctttg 21871
>gb|AF339161.1|AF339161 Tupaia glis mannose-6-phosphate/insulin-like growth factor II receptor (m6p/igf2r) mRNA, partial cds Length = 7274 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 tgtcttccccttcctcttca 247 |||||||||||||||||||| Sbjct: 5550 tgtcttccccttcctcttca 5569
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ttgtggtgtgcagcatcaga 459 |||||||||||||||||||| Sbjct: 20896933 ttgtggtgtgcagcatcaga 20896914
>emb|BX826446.1|CNS0A3B2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZD09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1267 Score = 40.1 bits (20), Expect = 7.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477 ||||||||||||||||| ||| ||||| ||||| ||| |||||||| Sbjct: 775 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 728
>emb|BX841589.1|CNS09YGI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL36ZD02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1042 Score = 40.1 bits (20), Expect = 7.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477 ||||||||||||||||| ||| ||||| ||||| ||| |||||||| Sbjct: 635 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 588
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence Length = 333321 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 tcttccccttcctcttcatcataa 253 |||||| ||||||||||||||||| Sbjct: 179923 tcttcctcttcctcttcatcataa 179900
>gb|AC007220.4|AC007220 Homo sapiens chromosome 16 clone RP11-396B14, complete sequence Length = 172945 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tcttccccttcctcttcatc 249 |||||||||||||||||||| Sbjct: 107071 tcttccccttcctcttcatc 107090
>gb|AC009224.6| Homo sapiens BAC clone RP11-92G23 from 2, complete sequence Length = 144784 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 atgtcttccccttcctcttc 246 |||||||||||||||||||| Sbjct: 143823 atgtcttccccttcctcttc 143842
>gb|AY087729.1| Arabidopsis thaliana clone 38042 mRNA, complete sequence Length = 1291 Score = 40.1 bits (20), Expect = 7.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477 ||||||||||||||||| ||| ||||| ||||| ||| |||||||| Sbjct: 766 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 719
>gb|BT002501.1| Arabidopsis thaliana expressed protein (At4g14930) mRNA, complete cds Length = 1195 Score = 40.1 bits (20), Expect = 7.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 430 tttgtatcccttgtggtgtgcagcatcagacggcacatctatattcag 477 ||||||||||||||||| ||| ||||| ||||| ||| |||||||| Sbjct: 698 tttgtatcccttgtggttagcaatatcagtcggcaaatcgatattcag 651
>gb|AC015799.23| Homo sapiens chromosome 17, clone RP11-135N5, complete sequence Length = 180157 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tcttccccttcctcttcatc 249 |||||||||||||||||||| Sbjct: 84721 tcttccccttcctcttcatc 84740
>gb|AC008051.3|F19C14 Sequence of BAC F19C14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 86014 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 aggaagatgaacatcttcaa 118 |||||||||||||||||||| Sbjct: 57397 aggaagatgaacatcttcaa 57416
>gb|AC166336.15| Mus musculus chromosome 1, clone RP24-74G12, complete sequence Length = 215765 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 tctggccatatattttcctt 419 |||||||||||||||||||| Sbjct: 127200 tctggccatatattttcctt 127181
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gccatatattttccttgctt 423 |||||||||||||||||||| Sbjct: 1643598 gccatatattttccttgctt 1643617
>gb|AC003670.1|AC003670 Homo sapiens 12q13.1 PAC RPCI1-130F5 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 88945 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 catatattttccttgctttg 425 |||||||||||||||||||| Sbjct: 16841 catatattttccttgctttg 16822
>gb|AC158142.19| Mus musculus chromosome 15, clone RP24-342H15, complete sequence Length = 195319 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 tcttccccttcctcttcatc 249 |||||||||||||||||||| Sbjct: 90182 tcttccccttcctcttcatc 90201 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,558,950 Number of Sequences: 3902068 Number of extensions: 5558950 Number of successful extensions: 101357 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101133 Number of HSP's gapped (non-prelim): 224 length of query: 532 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 509 effective length of database: 17,143,297,704 effective search space: 8725938531336 effective search space used: 8725938531336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)