Clone Name | rbasd23g09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468083.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2350 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 tatcagacttctaatttct 129 ||||||||||||||||||| Sbjct: 2330 tatcagacttctaatttct 2348
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 agctacaaaaatatagcaa 40 ||||||||||||||||||| Sbjct: 90863 agctacaaaaatatagcaa 90845
>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160000 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ctacaaaaatatagcaaac 42 ||||||||||||||||||| Sbjct: 35280 ctacaaaaatatagcaaac 35298
>emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 map 22q22.2-q22.3, complete sequence Length = 212865 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 agctacaaaaatatagcaa 40 ||||||||||||||||||| Sbjct: 27915 agctacaaaaatatagcaa 27897
>emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 map 22q22.2-q22.3, complete sequence Length = 164591 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 agctacaaaaatatagcaa 40 ||||||||||||||||||| Sbjct: 111166 agctacaaaaatatagcaa 111148
>gb|AC091635.1|AC091635 Drosophila melanogaster, chromosome 2R, region 56F-57A, BAC clone BACR10H12, complete sequence Length = 166168 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ctacaaaaatatagcaaac 42 ||||||||||||||||||| Sbjct: 160460 ctacaaaaatatagcaaac 160478
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 agctacaaaaatatagcaa 40 ||||||||||||||||||| Sbjct: 28010698 agctacaaaaatatagcaa 28010680
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 tatcagacttctaatttct 129 ||||||||||||||||||| Sbjct: 32969204 tatcagacttctaatttct 32969222
>gb|AC008347.2|AC008347 Drosophila melanogaster, chromosome 2R, region 57A-57A, BAC clone BACR03N16, complete sequence Length = 165519 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ctacaaaaatatagcaaac 42 ||||||||||||||||||| Sbjct: 53796 ctacaaaaatatagcaaac 53814
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 tatcagacttctaatttct 129 ||||||||||||||||||| Sbjct: 15144 tatcagacttctaatttct 15162
>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1534_E09 Length = 126209 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 tatcagacttctaatttct 129 ||||||||||||||||||| Sbjct: 123945 tatcagacttctaatttct 123963
>dbj|AK100242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055F23, full insert sequence Length = 2349 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 tatcagacttctaatttct 129 ||||||||||||||||||| Sbjct: 2329 tatcagacttctaatttct 2347
>gb|AE003792.3| Drosophila melanogaster chromosome 2R, section 58 of 73 of the complete sequence Length = 256764 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ctacaaaaatatagcaaac 42 ||||||||||||||||||| Sbjct: 215389 ctacaaaaatatagcaaac 215407
>dbj|D32165.1|RICAP Rice gene for aspartic protease, complete cds Length = 6782 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 agctacaaaaatatagcaa 40 ||||||||||||||||||| Sbjct: 207 agctacaaaaatatagcaa 189 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 950,190 Number of Sequences: 3902068 Number of extensions: 950190 Number of successful extensions: 64806 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64741 Number of HSP's gapped (non-prelim): 65 length of query: 161 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 139 effective length of database: 17,147,199,772 effective search space: 2383460768308 effective search space used: 2383460768308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)