ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_468083.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.8
2gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.8
3gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cance... 38 7.8
4emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 ... 38 7.8
5emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 m... 38 7.8
6gb|AC091635.1|AC091635 Drosophila melanogaster, chromosome 2R, r... 38 7.8
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
9gb|AC008347.2|AC008347 Drosophila melanogaster, chromosome 2R, r... 38 7.8
10dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
11dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
12dbj|AK100242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.8
13gb|AE003792.3| Drosophila melanogaster chromosome 2R, section 58... 38 7.8
14dbj|D32165.1|RICAP Rice gene for aspartic protease, complete cds 38 7.8

>ref|XM_468083.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2350

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 111  tatcagacttctaatttct 129
            |||||||||||||||||||
Sbjct: 2330 tatcagacttctaatttct 2348



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>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
             complete sequence
          Length = 204649

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    agctacaaaaatatagcaa 40
             |||||||||||||||||||
Sbjct: 90863 agctacaaaaatatagcaa 90845



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>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160000

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    ctacaaaaatatagcaaac 42
             |||||||||||||||||||
Sbjct: 35280 ctacaaaaatatagcaaac 35298



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>emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 map 22q22.2-q22.3,
             complete sequence
          Length = 212865

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    agctacaaaaatatagcaa 40
             |||||||||||||||||||
Sbjct: 27915 agctacaaaaatatagcaa 27897



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>emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 map 22q22.2-q22.3,
              complete sequence
          Length = 164591

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     agctacaaaaatatagcaa 40
              |||||||||||||||||||
Sbjct: 111166 agctacaaaaatatagcaa 111148



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>gb|AC091635.1|AC091635 Drosophila melanogaster, chromosome 2R, region 56F-57A, BAC clone
              BACR10H12, complete sequence
          Length = 166168

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 24     ctacaaaaatatagcaaac 42
              |||||||||||||||||||
Sbjct: 160460 ctacaaaaatatagcaaac 160478



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 22       agctacaaaaatatagcaa 40
                |||||||||||||||||||
Sbjct: 28010698 agctacaaaaatatagcaa 28010680



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 111      tatcagacttctaatttct 129
                |||||||||||||||||||
Sbjct: 32969204 tatcagacttctaatttct 32969222



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>gb|AC008347.2|AC008347 Drosophila melanogaster, chromosome 2R, region 57A-57A, BAC clone
             BACR03N16, complete sequence
          Length = 165519

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    ctacaaaaatatagcaaac 42
             |||||||||||||||||||
Sbjct: 53796 ctacaaaaatatagcaaac 53814



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>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_A01
          Length = 139121

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 111   tatcagacttctaatttct 129
             |||||||||||||||||||
Sbjct: 15144 tatcagacttctaatttct 15162



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>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1534_E09
          Length = 126209

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 111    tatcagacttctaatttct 129
              |||||||||||||||||||
Sbjct: 123945 tatcagacttctaatttct 123963



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>dbj|AK100242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055F23, full
            insert sequence
          Length = 2349

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 111  tatcagacttctaatttct 129
            |||||||||||||||||||
Sbjct: 2329 tatcagacttctaatttct 2347



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>gb|AE003792.3| Drosophila melanogaster chromosome 2R, section 58 of 73 of the complete
              sequence
          Length = 256764

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 24     ctacaaaaatatagcaaac 42
              |||||||||||||||||||
Sbjct: 215389 ctacaaaaatatagcaaac 215407



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>dbj|D32165.1|RICAP Rice gene for aspartic protease, complete cds
          Length = 6782

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  agctacaaaaatatagcaa 40
           |||||||||||||||||||
Sbjct: 207 agctacaaaaatatagcaa 189


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 950,190
Number of Sequences: 3902068
Number of extensions: 950190
Number of successful extensions: 64806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64741
Number of HSP's gapped (non-prelim): 65
length of query: 161
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 139
effective length of database: 17,147,199,772
effective search space: 2383460768308
effective search space used: 2383460768308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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