Clone Name | rbasd23g07 |
---|---|
Clone Library Name | barley_pub |
>KPYC_SOLTU (P22200) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)| Length = 510 Score = 79.3 bits (194), Expect = 4e-15 Identities = 41/52 (78%), Positives = 44/52 (84%) Frame = -2 Query: 456 GSXKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 301 GS KATDSESTE IL+AALKSAV + LCK GDAVV LHRIG ASVIKIC V+ Sbjct: 459 GSAKATDSESTEVILEAALKSAVTRGLCKPGDAVVALHRIGSASVIKICVVK 510
>KPYC_SOYBN (Q42806) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)| Length = 511 Score = 78.2 bits (191), Expect = 9e-15 Identities = 39/52 (75%), Positives = 44/52 (84%) Frame = -2 Query: 456 GSXKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 301 GS KATD+ESTE IL+AALKSA ++ LCK GDAVV LHRIG ASVIKIC V+ Sbjct: 460 GSAKATDAESTEVILEAALKSATERALCKPGDAVVALHRIGAASVIKICIVK 511
>KPYC_TOBAC (Q42954) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)| Length = 508 Score = 62.8 bits (151), Expect = 4e-10 Identities = 32/52 (61%), Positives = 38/52 (73%) Frame = -2 Query: 456 GSXKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 301 GS +A+ ESTEE L AL+ A K LCK GD+VV LHR+G ASVIKI TV+ Sbjct: 457 GSARASHEESTEEALDFALQHAKTKGLCKQGDSVVALHRVGTASVIKIVTVK 508
>KPYC_ARATH (O65595) Probable pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)| (PK) Length = 497 Score = 55.5 bits (132), Expect = 6e-08 Identities = 30/52 (57%), Positives = 36/52 (69%) Frame = -2 Query: 456 GSXKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 301 GS +A+ ESTEE L+ A + KKQLCK GD+VV L R G A VIKI TV+ Sbjct: 446 GSARASIDESTEETLEFASEYGKKKQLCKTGDSVVALFRTGNAIVIKILTVK 497
>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)| Length = 1755 Score = 31.6 bits (70), Expect = 0.99 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +2 Query: 284 MPGGHHWTVQILMTEATPMRCRTTTASPALQSCFFTADLSAAWRI 418 +P H+ I + A+PMR T +ASPA+ AD S W++ Sbjct: 247 LPPPHYVGPHIPSSLASPMRLSTPSASPAIPPLVHCADKSLPWKM 291
>NGL1_HUMAN (Q9HCJ2) Netrin-G1 ligand precursor (NGL-1) (Leucine-rich| repeat-containing protein 4C) Length = 640 Score = 30.4 bits (67), Expect = 2.2 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = -3 Query: 272 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 111 +P C W+ W D+ PS CC L GR + ++ Y+ YAP Sbjct: 301 NPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 354
>NGL1_MOUSE (Q8C031) Netrin-G1 ligand precursor (NGL-1) (Leucine-rich| repeat-containing protein 4C) Length = 640 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = -3 Query: 272 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 111 +P C W+ W D+ PS CC L GR + ++ Y+ YAP Sbjct: 301 NPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 354
>CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5)| (CCR-5) (CCR5) (CD195 antigen) Length = 352 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -3 Query: 197 CCIDPIRAGKLGGRGLRYIELFYYRWYAPCSMVCGRCHACTIF 69 CC++PI +G + Y+ +F+ + A C C C+IF Sbjct: 290 CCVNPIIYAFVGEKFRNYLLVFFQKHIAKCF-----CECCSIF 327
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +1 Query: 151 SPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 270 SPLP LP+ + QQ+A+ T T Q P GPG Sbjct: 500 SPLPQRLPSPTAAPQQSASQATPMTQGQGRQSRPVAGGPG 539
>LRC4B_MOUSE (P0C192) Leucine-rich repeat-containing protein 4B precursor| Length = 709 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/54 (27%), Positives = 23/54 (42%) Frame = -3 Query: 272 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 111 +P C W+ W + VPS CC L GR + ++ ++ YAP Sbjct: 313 NPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAP 366
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +1 Query: 151 SPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 270 SPLP LP+ + QQ+A+ T T Q P GPG Sbjct: 502 SPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPG 541
>TFEB_HUMAN (P19484) Transcription factor EB| Length = 476 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 219 INLFPQDPGFATAARTGVLGSPCPADIT 302 +N++ DP TA+ GV S CPAD+T Sbjct: 191 LNVYSSDPQ-VTASLVGVTSSSCPADLT 217
>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)| Length = 1759 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +2 Query: 284 MPGGHHWTVQILMTEATPMRCRTTTASPALQSCFFTADLSAAWRI-----SSVDSES 439 +P H+ I + A+PMR T +AS A+ +D S W++ + VDS S Sbjct: 247 LPPPHYVNPHIPSSLASPMRLSTPSASAAIPPLVHCSDKSLPWKMGVNPGNPVDSHS 303
>LRC4B_HUMAN (Q9NT99) Leucine-rich repeat-containing protein 4B precursor| Length = 713 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/54 (27%), Positives = 23/54 (42%) Frame = -3 Query: 272 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 111 +P C W+ W + VPS CC L GR + ++ ++ YAP Sbjct: 311 NPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAP 364
>LAMC2_MOUSE (Q61092) Laminin gamma-2 chain precursor (Laminin 5 gamma 2 subunit)| (Kalinin/nicein/epiligrin 100 kDa subunit) (Laminin B2t chain) Length = 1191 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = +2 Query: 305 TVQILMTEATPMRCRTTTASPALQSCFFTAD--LSAAWRISSVDSESVALXE 454 TVQ+++TEA R T+A +Q T D L + SVD E + L E Sbjct: 1071 TVQLVITEAQQADARATSAGVTIQDTLNTLDGILHLIDQPGSVDEEGMMLLE 1122
>TFEB_MOUSE (Q9R210) Transcription factor EB| Length = 475 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 219 INLFPQDPGFATAARTGVLGSPCPADIT 302 +N++ DP TA+ GV S CPAD+T Sbjct: 190 LNVYSGDPQ-VTASMVGVTSSSCPADLT 216
>KPBB_HUMAN (Q93100) Phosphorylase b kinase beta regulatory chain| (Phosphorylase kinase beta subunit) Length = 1092 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +3 Query: 84 MTPATHHTTGGIPTVIKELYI 146 +TP HHTT G P V K Y+ Sbjct: 391 LTPVLHHTTEGYPVVPKYYYV 411
>YMH1_CAEEL (P34468) Hypothetical protein F58A4.1| Length = 254 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 148 RSPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 270 RSP PPN+P +G + AT S ++P G G Sbjct: 191 RSPTPPNIPLLVGGQSRLATVRPDSPYASDAALNPLNGGAG 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,650,342 Number of Sequences: 219361 Number of extensions: 1173198 Number of successful extensions: 3364 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3271 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3364 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)