ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPYC_SOLTU (P22200) Pyruvate kinase, cytosolic isozyme (EC 2.7.1... 79 4e-15
2KPYC_SOYBN (Q42806) Pyruvate kinase, cytosolic isozyme (EC 2.7.1... 78 9e-15
3KPYC_TOBAC (Q42954) Pyruvate kinase, cytosolic isozyme (EC 2.7.1... 63 4e-10
4KPYC_ARATH (O65595) Probable pyruvate kinase, cytosolic isozyme ... 55 6e-08
5BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor) 32 0.99
6NGL1_HUMAN (Q9HCJ2) Netrin-G1 ligand precursor (NGL-1) (Leucine-... 30 2.2
7NGL1_MOUSE (Q8C031) Netrin-G1 ligand precursor (NGL-1) (Leucine-... 30 2.9
8CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (C... 29 4.9
9SYN1_RAT (P09951) Synapsin-1 (Synapsin I) 29 4.9
10LRC4B_MOUSE (P0C192) Leucine-rich repeat-containing protein 4B p... 29 6.4
11SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I) 29 6.4
12TFEB_HUMAN (P19484) Transcription factor EB 29 6.4
13BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor) 29 6.4
14LRC4B_HUMAN (Q9NT99) Leucine-rich repeat-containing protein 4B p... 29 6.4
15LAMC2_MOUSE (Q61092) Laminin gamma-2 chain precursor (Laminin 5 ... 28 8.4
16TFEB_MOUSE (Q9R210) Transcription factor EB 28 8.4
17KPBB_HUMAN (Q93100) Phosphorylase b kinase beta regulatory chain... 28 8.4
18YMH1_CAEEL (P34468) Hypothetical protein F58A4.1 28 8.4

>KPYC_SOLTU (P22200) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)|
          Length = 510

 Score = 79.3 bits (194), Expect = 4e-15
 Identities = 41/52 (78%), Positives = 44/52 (84%)
 Frame = -2

Query: 456 GSXKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 301
           GS KATDSESTE IL+AALKSAV + LCK GDAVV LHRIG ASVIKIC V+
Sbjct: 459 GSAKATDSESTEVILEAALKSAVTRGLCKPGDAVVALHRIGSASVIKICVVK 510



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>KPYC_SOYBN (Q42806) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)|
          Length = 511

 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 39/52 (75%), Positives = 44/52 (84%)
 Frame = -2

Query: 456 GSXKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 301
           GS KATD+ESTE IL+AALKSA ++ LCK GDAVV LHRIG ASVIKIC V+
Sbjct: 460 GSAKATDAESTEVILEAALKSATERALCKPGDAVVALHRIGAASVIKICIVK 511



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>KPYC_TOBAC (Q42954) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)|
          Length = 508

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 32/52 (61%), Positives = 38/52 (73%)
 Frame = -2

Query: 456 GSXKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 301
           GS +A+  ESTEE L  AL+ A  K LCK GD+VV LHR+G ASVIKI TV+
Sbjct: 457 GSARASHEESTEEALDFALQHAKTKGLCKQGDSVVALHRVGTASVIKIVTVK 508



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>KPYC_ARATH (O65595) Probable pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)|
           (PK)
          Length = 497

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 30/52 (57%), Positives = 36/52 (69%)
 Frame = -2

Query: 456 GSXKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICTVQ 301
           GS +A+  ESTEE L+ A +   KKQLCK GD+VV L R G A VIKI TV+
Sbjct: 446 GSARASIDESTEETLEFASEYGKKKQLCKTGDSVVALFRTGNAIVIKILTVK 497



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>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)|
          Length = 1755

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 284 MPGGHHWTVQILMTEATPMRCRTTTASPALQSCFFTADLSAAWRI 418
           +P  H+    I  + A+PMR  T +ASPA+      AD S  W++
Sbjct: 247 LPPPHYVGPHIPSSLASPMRLSTPSASPAIPPLVHCADKSLPWKM 291



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>NGL1_HUMAN (Q9HCJ2) Netrin-G1 ligand precursor (NGL-1) (Leucine-rich|
           repeat-containing protein 4C)
          Length = 640

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 272 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 111
           +P  C     W+ W   D+ PS   CC        L GR +  ++  Y+  YAP
Sbjct: 301 NPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 354



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>NGL1_MOUSE (Q8C031) Netrin-G1 ligand precursor (NGL-1) (Leucine-rich|
           repeat-containing protein 4C)
          Length = 640

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 272 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 111
           +P  C     W+ W   D+ PS   CC        L GR +  ++  Y+  YAP
Sbjct: 301 NPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 354



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>CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5)|
           (CCR-5) (CCR5) (CD195 antigen)
          Length = 352

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 197 CCIDPIRAGKLGGRGLRYIELFYYRWYAPCSMVCGRCHACTIF 69
           CC++PI    +G +   Y+ +F+ +  A C      C  C+IF
Sbjct: 290 CCVNPIIYAFVGEKFRNYLLVFFQKHIAKCF-----CECCSIF 327



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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 151 SPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 270
           SPLP  LP+   + QQ+A+  T  T     Q  P   GPG
Sbjct: 500 SPLPQRLPSPTAAPQQSASQATPMTQGQGRQSRPVAGGPG 539



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>LRC4B_MOUSE (P0C192) Leucine-rich repeat-containing protein 4B precursor|
          Length = 709

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -3

Query: 272 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 111
           +P  C     W+ W   + VPS   CC        L GR +  ++  ++  YAP
Sbjct: 313 NPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAP 366



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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 151 SPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 270
           SPLP  LP+   + QQ+A+  T  T     Q  P   GPG
Sbjct: 502 SPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPG 541



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>TFEB_HUMAN (P19484) Transcription factor EB|
          Length = 476

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 219 INLFPQDPGFATAARTGVLGSPCPADIT 302
           +N++  DP   TA+  GV  S CPAD+T
Sbjct: 191 LNVYSSDPQ-VTASLVGVTSSSCPADLT 217



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>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)|
          Length = 1759

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 284 MPGGHHWTVQILMTEATPMRCRTTTASPALQSCFFTADLSAAWRI-----SSVDSES 439
           +P  H+    I  + A+PMR  T +AS A+      +D S  W++     + VDS S
Sbjct: 247 LPPPHYVNPHIPSSLASPMRLSTPSASAAIPPLVHCSDKSLPWKMGVNPGNPVDSHS 303



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>LRC4B_HUMAN (Q9NT99) Leucine-rich repeat-containing protein 4B precursor|
          Length = 713

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -3

Query: 272 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 111
           +P  C     W+ W   + VPS   CC        L GR +  ++  ++  YAP
Sbjct: 311 NPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAP 364



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>LAMC2_MOUSE (Q61092) Laminin gamma-2 chain precursor (Laminin 5 gamma 2 subunit)|
            (Kalinin/nicein/epiligrin 100 kDa subunit) (Laminin B2t
            chain)
          Length = 1191

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 305  TVQILMTEATPMRCRTTTASPALQSCFFTAD--LSAAWRISSVDSESVALXE 454
            TVQ+++TEA     R T+A   +Q    T D  L    +  SVD E + L E
Sbjct: 1071 TVQLVITEAQQADARATSAGVTIQDTLNTLDGILHLIDQPGSVDEEGMMLLE 1122



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>TFEB_MOUSE (Q9R210) Transcription factor EB|
          Length = 475

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 219 INLFPQDPGFATAARTGVLGSPCPADIT 302
           +N++  DP   TA+  GV  S CPAD+T
Sbjct: 190 LNVYSGDPQ-VTASMVGVTSSSCPADLT 216



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>KPBB_HUMAN (Q93100) Phosphorylase b kinase beta regulatory chain|
           (Phosphorylase kinase beta subunit)
          Length = 1092

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 84  MTPATHHTTGGIPTVIKELYI 146
           +TP  HHTT G P V K  Y+
Sbjct: 391 LTPVLHHTTEGYPVVPKYYYV 411



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>YMH1_CAEEL (P34468) Hypothetical protein F58A4.1|
          Length = 254

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 148 RSPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 270
           RSP PPN+P  +G   + AT    S       ++P   G G
Sbjct: 191 RSPTPPNIPLLVGGQSRLATVRPDSPYASDAALNPLNGGAG 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,650,342
Number of Sequences: 219361
Number of extensions: 1173198
Number of successful extensions: 3364
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3364
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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