ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23g06 |
|---|---|
| Clone Library Name | barley_pub |
>RD22_ARATH (Q08298) Dehydration-responsive protein RD22 precursor| Length = 392 Score = 32.7 bits (73), Expect = 0.25 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -2 Query: 264 PVCHFLPQDHVVW 226 PVCHFLP+ HVVW Sbjct: 377 PVCHFLPETHVVW 389
>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100| Length = 1038 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -1 Query: 256 PLPAAGPRRLDPPRLMKPGRPAPLVSTI 173 P A+GP P M+PG+P+P VS I Sbjct: 57 PFTASGPPPAPPVGTMRPGQPSPFVSQI 84
>MYPR_RAT (P60203) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 155 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKW 256 G S TV G + RGS G HQ ++ C KW Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW 144
>MYPR_RABIT (P47789) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 155 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKW 256 G S TV G + RGS G HQ ++ C KW Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW 144
>MYPR_MOUSE (P60202) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 155 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKW 256 G S TV G + RGS G HQ ++ C KW Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW 144
>MYPR_HUMAN (P60201) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 155 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKW 256 G S TV G + RGS G HQ ++ C KW Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW 144
>MYPR_CANFA (P23294) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 155 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKW 256 G S TV G + RGS G HQ ++ C KW Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW 144
>MYPR_BOVIN (P04116) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 30.0 bits (66), Expect = 1.6 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 155 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKW 256 G S TV G + RGS G HQ ++ C KW Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVCHCLGKW 144
>MYPR_MACFA (Q8HXW7) Myelin proteolipid protein (PLP) (Lipophilin)| Length = 276 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 155 GQSTTVYGAYQRRGSTGLHQPRRVQTTWSCGRKW 256 G S TV G + RGS G HQ ++ C KW Sbjct: 111 GLSATVTGGQKGRGSRGQHQAHSLERVRHCLGKW 144
>HISX_SHEON (Q8EFB1) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 438 Score = 29.6 bits (65), Expect = 2.1 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = -1 Query: 205 PGRPAPLVSTIYSCALPYIMVSCTLASLYTFPLFGTYCVLMAWRCQYRQLVRSG 44 PG APL+ST+ ALP + C L + P V A C ++ + G Sbjct: 137 PGGSAPLISTVLMLALPATIAGCEQRVLVSPPPINDAIVYAANVCGITEIYQVG 190
>BOC_HUMAN (Q9BWV1) Brother of CDO precursor (Protein BOC)| Length = 1114 Score = 28.9 bits (63), Expect = 3.6 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 10/67 (14%) Frame = -1 Query: 238 PRRLDPPRLMKPGRPAPL---------VSTIYSCALPYIMVSCTLASLYTFPL-FGTYCV 89 P RL PP L P P P S LPY++V L S+ + F +C+ Sbjct: 818 PGRLPPPTLAPPQPPLPETIERPVGTGAMVARSSDLPYLIVGVVLGSIVLIIVTFIPFCL 877 Query: 88 LMAWRCQ 68 AW Q Sbjct: 878 WRAWSKQ 884
>PTF1A_MOUSE (Q9QX98) Pancreas transcription factor 1 subunit alpha| (Pancreas-specific transcription factor 1a) (bHLH transcription factor p48) (p48 DNA-binding subunit of transcription factor PTF1) (PTF1-p48) Length = 324 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = -1 Query: 256 PLPAAGPRRLDPPRLMKPGRPAPLVSTIYSC 164 P P+A P L PP L PG P VS Y C Sbjct: 72 PAPSAAPHALAPPPLGDPGEPEDNVS--YCC 100
>COBB_STRCO (Q9RJ16) Cobyrinic acid A,C-diamide synthase| Length = 486 Score = 28.1 bits (61), Expect = 6.1 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 256 PLPAAGPRRLDPPRLMKPGRPAP 188 PLP P P L++PGRP P Sbjct: 258 PLPVPSPGAAPPDPLVRPGRPRP 280
>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin| receptor 1) (Lectomedin-2) (Fragment) Length = 1406 Score = 27.7 bits (60), Expect = 8.0 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -1 Query: 262 GVPLPAAGPRRLDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLASLYTFPL 107 G P P+AGP P RP PL ST A P A L T P+ Sbjct: 332 GPPDPSAGPATSPPLSTTTTARPTPLTST----ASPAATTPLRRAPLTTHPV 379
>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (Lectomedin-2) Length = 1474 Score = 27.7 bits (60), Expect = 8.0 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -1 Query: 262 GVPLPAAGPRRLDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLASLYTFPL 107 G P P+AGP P RP PL ST A P A L T P+ Sbjct: 397 GPPDPSAGPATSPPLSTTTTARPTPLTST----ASPAATTPLRRAPLTTHPV 444
>CRCB2_CORGL (Q8NMM8) Protein crcB homolog 2| Length = 108 Score = 27.7 bits (60), Expect = 8.0 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Frame = -1 Query: 205 PGRPAPLVSTIYSCALPYIMVSCTLASLYTFPLFGTYC-VLMAWRCQYRQL 56 PG+ A L + +C VS L LYT L +C L W ++L Sbjct: 25 PGKRATLAANTLACLAGGFFVSLDLPHLYTVLLIAGFCGALSTWSTLAKEL 75
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 27.7 bits (60), Expect = 8.0 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -1 Query: 262 GVPLPAAGPRRLDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLASLYTFPL 107 G P P+AGP P RP PL ST A P A L T P+ Sbjct: 397 GPPDPSAGPATSPPLSTTTTARPTPLTST----ASPAATTPLRRAPLTTHPV 444
>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (CIRL-1) Length = 1515 Score = 27.7 bits (60), Expect = 8.0 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = -1 Query: 262 GVPLPAAGPRRLDPPRLMKPGRPAPLVSTIYSCALPYIMVSCTLASLYTFPL 107 G P P+AGP P RP PL ST A P A L T P+ Sbjct: 397 GPPDPSAGPATSPPLSTTTTARPTPLTST----ASPAATTPLRRAPLTTHPV 444 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,599,480 Number of Sequences: 219361 Number of extensions: 762188 Number of successful extensions: 2384 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2305 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2382 length of database: 80,573,946 effective HSP length: 64 effective length of database: 66,534,842 effective search space used: 1596836208 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
