>RAD50_MOUSE (P70388) DNA repair protein RAD50 (EC 3.6.-.-) (mRad50)|
          Length = 1312

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
 Frame = -2

Query: 582 RDQIEESLRTKMASVKARMTQLQ-DAQKVAEVTSEVTERELELEAQLVEARSIIQEQASI 406
           + +I    ++++  V++ + QL+  + ++ E+  E+T+ E EL ++  +  SI   +A +
Sbjct: 446 KTEILTKKQSELRHVRSELQQLEGSSDRILELDQELTKAEREL-SKAEKNSSIETLKAEV 504

Query: 405 MSKHFSKSDKPRRLSGLDAEHEAIHSAST 319
           MS    K+D  R L  LD E E ++  +T
Sbjct: 505 MSLQNEKADLDRSLRKLDQEMEQLNHHTT 533

>LETM1_HUMAN (O95202) Leucine zipper-EF-hand-containing transmembrane protein 1,|
           mitochondrial precursor
          Length = 739

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 27/85 (31%), Positives = 44/85 (51%)
 Frame = -2

Query: 579 DQIEESLRTKMASVKARMTQLQDAQKVAEVTSEVTERELELEAQLVEARSIIQEQASIMS 400
           DQ++ +L+T +  + A+  Q+    KVAEV  E  + + +LEA L       QE+A+I  
Sbjct: 431 DQLKSTLQT-LPEIVAKEAQV----KVAEVEGEQVDNKAKLEATL-------QEEAAIQQ 478

Query: 399 KHFSKSDKPRRLSGLDAEHEAIHSA 325
           +H  K  + R     D E E + +A
Sbjct: 479 EHREKELQKRSEVAKDFEPERVVAA 503

>GOGA2_MOUSE (Q921M4) Golgin subfamily A member 2 (Cis-Golgi matrix protein|
           GM130)
          Length = 888

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = -2

Query: 687 SSQAVVAGNGRQXAGSPQPPLGGKTDVFDL-----PFHMARDQIEESLRTKMASVKARMT 523
           SSQ+  AG   Q   + +     +T V  L        + RDQ  E+L+ + A  + R+ 
Sbjct: 242 SSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLKQLQVERDQYAENLKGESAMWQQRVQ 301

Query: 522 QLQDAQKVAEVTSEVTEREL-ELEAQLVEARSIIQE 418
           Q+ +     +   E  ER++ ELE  L   RS ++E
Sbjct: 302 QMAEQVHTLKEEKEHRERQVQELETSLAALRSQMEE 337

>AKA12_HUMAN (Q02952) A-kinase anchor protein 12 (A-kinase anchor protein 250 kDa)|
            (AKAP 250) (Myasthenia gravis autoantigen gravin)
          Length = 1781

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
 Frame = -2

Query: 666  GNGRQXAGSPQPPLGGKTDVFDLPFHMARDQIEESLRTKMASVKARMTQLQDAQKVA-EV 490
            G   Q       P G   D  D+P  +   + +   R KM + +A+    Q  QK A EV
Sbjct: 820  GKQEQAPVEDAGPTGANEDDSDVPAVVPLSEYDAVEREKMEAQQAQKGAEQPEQKAATEV 879

Query: 489  TSEVTERELELEAQLV----EARSIIQEQA 412
            + E++E ++ + A  V     A +II+E++
Sbjct: 880  SKELSESQVHMMAAAVADGTRAATIIEERS 909

>AKAP9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A-anchoring|
            protein 9) (PRKA9) (A-kinase anchor protein 450 kDa)
            (AKAP 450) (A-kinase anchor protein 350 kDa) (AKAP 350)
            (hgAKAP 350) (AKAP 120-like protein) (Hyperion protein)
            (Yotiao protei
          Length = 3911

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
 Frame = -2

Query: 561  LRTKMASVKARMTQLQDAQK-----VAEVTSEVTERELELEAQLVEARSIIQEQASIMSK 397
            ++ +++S+K R T+LQ+        VAE+ SE+ + +LELE  L      ++E  +   +
Sbjct: 3140 MQVELSSMKDRATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLE 3199

Query: 396  HFSKSDKPRRLS 361
               K+D+   L+
Sbjct: 3200 VKDKTDEVHLLN 3211

>Y1617_METMA (Q8PWH0) UPF0272 protein MM1617|
          Length = 396

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = -2

Query: 522 QLQDAQKVAEVTSEVTERELELEAQLVEARSIIQEQASIMSKHFSKSDKPRRLSGLDAEH 343
           ++ D  K +++ S+V    L++  ++ EA + +  Q  +   HF +  +   L+ +    
Sbjct: 73  EIVDLVKASKLPSKVEASALDIFLKMAEAEAAVHGQPDLEKLHFHEVGQSDALADVIGSS 132

Query: 342 EAIHSASTD 316
            AIHS + D
Sbjct: 133 AAIHSLNCD 141

>TUFT1_HUMAN (Q9NNX1) Tuftelin|
          Length = 390

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = -2

Query: 567 ESLRTKMASVKARMTQLQDAQKVAEVTSEVTERELELEAQLVEARSIIQEQASIMSKHFS 388
           ESLR  +  + A++ + +   +   V  EVT    + EA+     ++ +E+  +  K   
Sbjct: 170 ESLRKTVQDLLAKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNV-ALQREEDRVEQKEAE 228

Query: 387 KSDKPRRLSGLDAEHEAI 334
             +  RRL G++ EH+A+
Sbjct: 229 VGELQRRLLGMETEHQAL 246

>TUFT1_MOUSE (O08970) Tuftelin|
          Length = 390

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 19/78 (24%), Positives = 39/78 (50%)
 Frame = -2

Query: 567 ESLRTKMASVKARMTQLQDAQKVAEVTSEVTERELELEAQLVEARSIIQEQASIMSKHFS 388
           ESL+  +  +  ++ + +   +   V  EVT    + EA+     ++ +E+  +  K   
Sbjct: 170 ESLKKTVQELLVKLREAERRHQSDRVAFEVTLSRYQREAEQSNV-ALQREEDRVEQKAAE 228

Query: 387 KSDKPRRLSGLDAEHEAI 334
             +  RRL G++AEH+A+
Sbjct: 229 IEELQRRLLGMEAEHQAL 246

>SBCC_VIBCH (Q9KM67) Nuclease sbcCD subunit C|
          Length = 1013

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
 Frame = -2

Query: 570 EESLRTKMASVKARMT----QLQDAQKVAEVTSEVTERELELEAQLVEARSII------Q 421
           EE L+T++  +   +T    QL+  Q+  + T    +  LELE Q +  + ++      Q
Sbjct: 222 EEQLQTELTELAPVLTHAQSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQ 281

Query: 420 EQASIMSKHFSKSDKPRRLSGLDAEHEAIHSASTDV 313
           EQA+ +     +  + ++ + L A H+  H A  ++
Sbjct: 282 EQATHIEMLRQQRQQAQKAARLTAVHQQWHQAQKNL 317

>ITSN1_MOUSE (Q9Z0R4) Intersectin-1 (EH and SH3 domains protein 1)|
          Length = 1714

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
 Frame = -2

Query: 579 DQIEESLRTKMASVKARMTQLQDAQKV--------------AEVTSEVTERE-LELEAQL 445
           D++E   R+K+  +     QL++ +++              A +  +  ER+ LELE Q 
Sbjct: 586 DEVERETRSKLQEIDVFNNQLKELREIHSKQQLQKQRSLEAARLKQKEQERKSLELEKQK 645

Query: 444 VEARSIIQEQASIMSKHFSKSDKPR 370
            +A+  +QE+     +H  + ++PR
Sbjct: 646 EDAQRRVQERDKQWLEHVQQEEQPR 670

>TPR_HUMAN (P12270) Nucleoprotein TPR|
          Length = 2349

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = -2

Query: 582  RDQIEESLRTKMASVKARMTQLQDAQKVAEVTSEVT---ERELELEAQLVEARSIIQEQA 412
            +++++E+L+    ++       +D Q+ A++  E     EREL L A  VEA    +EQ 
Sbjct: 1044 QNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQV 1103

Query: 411  SIMS 400
            S M+
Sbjct: 1104 SKMA 1107

>TNNI_DROME (P36188) Troponin I (Tn I) (Protein wings apart-A) (Protein heldup)|
          Length = 268

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 17/112 (15%)
 Frame = -2

Query: 699 APTGSSQAVVAGNGRQXAGSPQPPLGGKTDVFD--LPFHMARDQIEESLRTKMASVKARM 526
           AP  + +A  A NG+    +   P G   D  D  +    A+   +  +  K A V+ RM
Sbjct: 26  APAANGKAAPAANGKAAPAAAAAPAGPPKDPNDPKVKAEEAKKAKQAEIERKRAEVRKRM 85

Query: 525 TQLQDAQKVAE--VTSE-------------VTERELELEAQLVEARSIIQEQ 415
            +   A+K  +  +T E               E + E E +  E R II+E+
Sbjct: 86  EEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRIIEER 137

>LETM1_MOUSE (Q9Z2I0) Leucine zipper-EF-hand containing transmembrane protein 1,|
           mitochondrial precursor
          Length = 738

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = -2

Query: 579 DQIEESLRTKMASVKARMTQLQDAQKVAEVTSEVTERELELEAQLVEARSIIQE 418
           DQ++ +L+T +  + A+  Q+    KVAEV  E  + + +LEA L E  +I QE
Sbjct: 430 DQLKSTLQT-LPEIVAKEAQV----KVAEVEGEKVDNKAKLEATLQEEAAIQQE 478

>FBX30_HUMAN (Q8TB52) F-box only protein 30|
          Length = 745

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
 Frame = -2

Query: 606 FDLPFHMARDQIEESLRTKMASVKARMTQ-------LQDAQKVAEVTSEVTE-RELELEA 451
           F  PF MAR+++ E L    ASV     +         D +    ++ +V E  +L++  
Sbjct: 65  FGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENLSRDVDEVAQLDMAL 124

Query: 450 QLVEARSIIQ--EQASIMSKHFSKSDKPR 370
            L + R +++  + A++MSK   K  KPR
Sbjct: 125 ALQDQRMLLESLKVATMMSKATDKVSKPR 153

>DPB3_SCHPO (Q10315) DNA polymerase epsilon subunit C (EC 2.7.7.7) (DNA|
           polymerase II subunit C)
          Length = 199

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = -2

Query: 558 RTKMASVKARMTQLQDAQKVAEVTSEVTERELELEAQLVEARSIIQEQASIMSKHFSK 385
           R  +A +K  M   QD  KVA+VT  +  + LEL  Q     SIIQE       H +K
Sbjct: 23  RFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQ-----SIIQESCKQTRLHQAK 75

>NIN_MOUSE (Q61043) Ninein|
          Length = 2035

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
 Frame = -2

Query: 585  ARDQIEESLRTKMASVKARMTQLQDA-----QKVAEVTSEVTERELELEAQLVEARSIIQ 421
            A ++  ESL++++A  +A++  L+D       ++AE+ S++     E EA   E  S+ +
Sbjct: 1738 AWEEQSESLKSQLAVSQAKVQNLEDVLQNVNLQMAEIESDLQVTRQEKEALKQEVMSLHR 1797

Query: 420  EQASIMSKHFSKSDKPRRLSGLDAEHEAI 334
            +  + + K +     P  LSGL  +   +
Sbjct: 1798 QLQNAIDKDWVSETAP-HLSGLRGQQRRL 1825

>WDR67_MOUSE (Q6NXY1) WD-repeat protein 67 (Protein 4-B-3)|
          Length = 996

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = -2

Query: 588  MARDQIEESLRTKMASVKARMTQLQDAQKVAEVTSEVTERELELEAQ-LVEARSIIQEQA 412
            + +DQ E  LR     ++ R  Q++D Q++A    ++  R+LELEAQ  +  + +   Q 
Sbjct: 783  LQQDQREMELRRLEDEIE-RKVQMRD-QEIAATAKDLEIRQLELEAQKRLYEKDLTTSQE 840

Query: 411  SIMSKHFSKSDKPRRLSGLDAEH 343
            ++  +    +D  RR + L+ EH
Sbjct: 841  AVAKEIREDTDAHRRKAALE-EH 862

>CHR3_SCHPO (Q09897) Chitin synthase regulatory factor 3 (Chs four homolog 1)|
          Length = 932

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = -2

Query: 630 PLGGKTDVFDLPFHMARDQIEESLRTKMASVKARMTQLQDAQKVAEVTSEVTERELELEA 451
           P GG  D  D  ++   D + E  + K  S +    + +D  +   +T+ V+    + E 
Sbjct: 232 PYGGFDDFLD-NYYKDDDTVLEDNQLKSNS-RIETLEEEDGAESDSITNTVSNASSDAEP 289

Query: 450 QLVEARSIIQEQASIMSK-HFSKSDKPRRLSGLDAEHEAIHSASTDV 313
                  + +    + SK HFS +D      GL+++  ++ S S D+
Sbjct: 290 AHRHLGPVYENSGHLPSKSHFSSTDSNTDSFGLESDERSLPSVSNDL 336


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,316,029
Number of Sequences: 219361
Number of extensions: 1911010
Number of successful extensions: 5454
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5453
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)