ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23g01 |
|---|---|
| Clone Library Name | barley_pub |
>PURA_STAS1 (Q4A164) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 427 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/18 (77%), Positives = 14/18 (77%) Frame = +3 Query: 111 TCCASLEELPNLLRRYLE 164 T C SLEELPN RRYLE Sbjct: 381 TGCRSLEELPNNARRYLE 398
>RPOC_VIBVY (Q7MGS0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 30.0 bits (66), Expect = 4.5 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + A + I +E + + DAL+ Sbjct: 260 FATSDLNDLYRRVINRNNRLKRLLELAAPD------IIVRNEKRMLQESVDALLDNGRRG 313 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
>RPOC_VIBVU (Q8DD19) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 30.0 bits (66), Expect = 4.5 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + A + I +E + + DAL+ Sbjct: 260 FATSDLNDLYRRVINRNNRLKRLLELAAPD------IIVRNEKRMLQESVDALLDNGRRG 313 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
>RPOC_VIBPA (Q87KQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 30.0 bits (66), Expect = 4.5 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + A + I +E + + DAL+ Sbjct: 260 FATSDLNDLYRRVINRNNRLKRLLELAAPD------IIVRNEKRMLQESVDALLDNGRRG 313 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
>RPOC_VIBCH (Q9KV29) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 30.0 bits (66), Expect = 4.5 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + A + I +E + + DAL+ Sbjct: 260 FATSDLNDLYRRVINRNNRLKRLLELAAPD------IIVRNEKRMLQESVDALLDNGRRG 313 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
>RPOC_ACIAD (Q6FF89) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1397 Score = 29.6 bits (65), Expect = 5.9 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + A + I +E + + DAL+ Sbjct: 265 FATSDLNDLYRRVINRNNRLKRLLDLAAPD------IIVRNEKRMLQESVDALLDNGRRG 318 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 319 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 353
>RPOC_PHOPR (Q6LLW3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 29.6 bits (65), Expect = 5.9 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + A + I +E + + DAL+ Sbjct: 260 FATSDLNDLYRRVINRNNRLKRLLDLAAPD------IIVRNEKRMLQESVDALLDNGRRG 313 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
>RPOC_BLOPB (Q492C0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 29.6 bits (65), Expect = 5.9 Identities = 23/95 (24%), Positives = 40/95 (42%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + A E I +E + DAL+ Sbjct: 261 FATSDLNDLYRRVINRNNRLKRLLDLAAPE------IIVRNEKRMLQEAVDALLDNGRRG 314 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 315 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 349
>RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 29.6 bits (65), Expect = 5.9 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + A + I +E + + DAL+ Sbjct: 260 FATSDLNDLYRRVINRNNRLKRLLDLAAPD------IIVRNEKRMLQESVDALLDNGRRG 313 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
>GGA1_HUMAN (Q9UJY5) ADP-ribosylation factor-binding protein GGA1| (Golgi-localized, gamma ear-containing, ARF-binding protein 1) (Gamma-adaptin-related protein 1) Length = 639 Score = 29.6 bits (65), Expect = 5.9 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = -3 Query: 542 QCYQSQHTIQRFXETAGDNEALLFEALSVNDEVQKVLSKYEEM 414 +C + + T+ R DN+ L E L ND + +V++ Y+++ Sbjct: 255 RCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQL 297
>RPOC_SHEON (Q8EK73) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 29.6 bits (65), Expect = 5.9 Identities = 22/95 (23%), Positives = 41/95 (43%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + A + I +E + + DAL+ Sbjct: 260 FATSDLNDLYRRVINRNNRLKRLLDLAAPD------IIVRNEKRMLQESVDALLDNGRRG 313 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
>GGA1_MOUSE (Q8R0H9) ADP-ribosylation factor-binding protein GGA1| (Golgi-localized, gamma ear-containing, ARF-binding protein 1) (Gamma-adaptin-related protein 1) Length = 635 Score = 29.6 bits (65), Expect = 5.9 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = -3 Query: 542 QCYQSQHTIQRFXETAGDNEALLFEALSVNDEVQKVLSKYEEM 414 +C + + T+ R DN+ L E L ND + +V++ Y+++ Sbjct: 254 RCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQL 296
>TIP41_ARATH (O82316) Probable aquaporin TIP4.1 (Tonoplast intrinsic protein| 4.1) (Epsilon-tonoplast intrinsic protein) (Epsilon-TIP) Length = 249 Score = 29.3 bits (64), Expect = 7.7 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +3 Query: 306 FSDQGILVANSHGIFMLRGNWYDHWLF 386 FS + A S G ++ GNW DHW++ Sbjct: 187 FSGASMNPARSFGPALVSGNWTDHWVY 213
>KLP1_CHLRE (P46870) Kinesin-like protein KLP1| Length = 776 Score = 29.3 bits (64), Expect = 7.7 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 8/80 (10%) Frame = -3 Query: 494 GDNEALLFEALSVNDEVQKVLSKYEEMKKPMASARTE-QPVVIPIAT------EHEDSVT 336 GD E L EA ++ E++ S+Y + SAR E +P + +A E D Sbjct: 619 GDGEVLDSEAYALMQELKSAKSRYRTDFDSLKSAREELEPQIQAVAVARAGLLEAFDRWA 678 Query: 335 VGNEDALVRKPA-AARAMSG 279 D +++ A A RAMSG Sbjct: 679 AAQSDTTLKRMATAGRAMSG 698
>RDRP_SHMV (P89202) RNA-directed RNA polymerase (EC 2.7.7.48) (186 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (128 kDa protein)] Length = 1629 Score = 29.3 bits (64), Expect = 7.7 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = -1 Query: 241 YLARREEAVPRTCPKGRTQRKMT*STSKYRLSRLGSSSRDAQHVCCFYTAERCLYS 74 YL+R E+ C R + K++ +Y+ + + D +HV C T E+C S Sbjct: 145 YLSRFEDKSGDYCQWQRKKPKVSKPLPRYQKACFDRYNEDPEHVTCSETFEKCRIS 200
>RPOC_PSYAR (Q4FQH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/95 (22%), Positives = 41/95 (43%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + + + I +E + + DAL+ Sbjct: 262 FATSDLNDLYRRVINRNNRLKRLLELSAPD------IIVRNEKRMLQESVDALLDNGRRG 315 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 316 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 350
>RPOC_HAEDU (Q7VKL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/95 (22%), Positives = 40/95 (42%) Frame = -3 Query: 473 FEALSVNDEVQKVLSKYEEMKKPMASARTEQPVVIPIATEHEDSVTVGNEDALVRKPAAA 294 F +ND ++V+++ +K+ + + I +E + + DAL+ Sbjct: 261 FATSDLNDLYRRVINRNNRLKRLLGLVAPD------IIVRNEKRMLQESVDALLDNGRRG 314 Query: 293 RAMSGGXXXXXXXXDEMIFGKKGGSSSQDVSKRQD 189 RA++G +MI GK+G + KR D Sbjct: 315 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 349 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,208,512 Number of Sequences: 219361 Number of extensions: 1494905 Number of successful extensions: 4480 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4342 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4479 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
