ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467289.1| Oryza sativa (japonica cultivar-group), mRNA 345 9e-92
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 345 9e-92
3dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic D... 345 9e-92
4dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 345 9e-92
5dbj|AK066018.1| Oryza sativa (japonica cultivar-group) cDNA clon... 345 9e-92
6emb|AJ495787.1|OSA495787 Oryza sativa (japonica cultivar-group) ... 337 2e-89
7emb|AJ234603.1|HVU234603 Hordeum vulgare genomic DNA fragment; c... 230 4e-57
8gb|AY104127.1| Zea mays PCO110287 mRNA sequence 228 2e-56
9ref|NM_197898.1| Oryza sativa (japonica cultivar-group) hepatocy... 72 2e-09
10gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 geno... 72 2e-09
11emb|AJ495791.1|OSA495791 Oryza sativa (japonica cultivar-group) ... 72 2e-09
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
14gb|DQ455535.1| Medicago truncatula cDNA-AFLP fragment BT43M32_48... 48 0.031
15gb|AC018812.5|AC018812 Homo sapiens chromosome 3 clone RP11-161D... 44 0.48
16gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3... 44 0.48
17emb|CR394546.9| Zebrafish DNA sequence from clone CH211-212I14 i... 42 1.9
18gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosom... 42 1.9
19gb|AC023202.8| Homo sapiens chromosome 8, clone RP11-203E8, comp... 42 1.9
20gb|AC108685.4| Homo sapiens X BAC RP11-323F16 (Roswell Park Canc... 42 1.9
21gb|AC091194.7| Homo sapiens chromosome 8, clone RP11-780J19, com... 42 1.9
22gb|AC106713.3| Homo sapiens X BAC RP11-770A12 (Roswell Park Canc... 42 1.9
23emb|CT030709.6| Mouse DNA sequence from clone RP23-268C22 on chr... 42 1.9
24ref|NM_180503.1| Arabidopsis thaliana protein transporter AT5G16... 40 7.5
25ref|NM_121694.2| Arabidopsis thaliana protein transporter AT5G16... 40 7.5
26ref|NM_180502.1| Arabidopsis thaliana protein transporter AT5G16... 40 7.5
27gb|AY248666.1| Citrus tristeza virus isolate T318 haplotype E20 ... 40 7.5
28gb|AC159879.2| Mus musculus BAC clone RP24-497H22 from chromosom... 40 7.5
29emb|AL121993.7|HSDJ776P7 Human DNA sequence from clone RP4-776P7... 40 7.5
30emb|AL391141.1|ATF2K13 Arabidopsis thaliana DNA chromosome 5, BA... 40 7.5
31gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, comple... 40 7.5
32gb|AY062640.1| Arabidopsis thaliana TOM (target of myb1)-like pr... 40 7.5
33gb|AY056786.1| Arabidopsis thaliana AT5g16880/F2K13_30 mRNA, com... 40 7.5
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
35gb|AY085140.1| Arabidopsis thaliana clone 1330 mRNA, complete se... 40 7.5
36gb|AC092275.3| Homo sapiens chromosome 16 clone CTC-786C10, comp... 40 7.5
37gb|BT002553.1| Arabidopsis thaliana TOM (target of myb1)-like pr... 40 7.5
38dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
39dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
40dbj|AK067871.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5

>ref|XM_467289.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1624

 Score =  345 bits (174), Expect = 9e-92
 Identities = 345/402 (85%), Gaps = 3/402 (0%)
 Strand = Plus / Minus

                                                                        
Query: 152  acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211
            |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || |
Sbjct: 1442 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 1383

                                                                        
Query: 212  gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1382 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 1323

                                                                        
Query: 272  catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331
            |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || ||||
Sbjct: 1322 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 1263

                                                                        
Query: 332  caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388
            | || ||  | ||||||||||| || ||||||||||||||||| || |||   |||||||
Sbjct: 1262 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 1203

                                                                        
Query: 389  tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448
                | |||| ||   ||| |||||||||| ||| |||||||| ||||| || || | ||
Sbjct: 1202 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 1143

                                                                        
Query: 449  catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508
            |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || |
Sbjct: 1142 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 1083

                                                      
Query: 509  atctctggatagtatgttgagattggtagcattgntgcacaa 550
             |||||||||||| || ||||||||||||||||| |||||||
Sbjct: 1082 ttctctggatagtgtgctgagattggtagcattgttgcacaa 1041



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 8    cgtatgcaaataaacaagcgacccaa 33
            ||||||||||||||||||||| ||||
Sbjct: 1567 cgtatgcaaataaacaagcgatccaa 1542



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  345 bits (174), Expect = 9e-92
 Identities = 345/402 (85%), Gaps = 3/402 (0%)
 Strand = Plus / Minus

                                                                            
Query: 152      acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211
                |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || |
Sbjct: 28695068 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 28695009

                                                                            
Query: 212      gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271
                ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 28695008 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 28694949

                                                                            
Query: 272      catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331
                |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || ||||
Sbjct: 28694948 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 28694889

                                                                            
Query: 332      caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388
                | || ||  | ||||||||||| || ||||||||||||||||| || |||   |||||||
Sbjct: 28694888 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 28694829

                                                                            
Query: 389      tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448
                    | |||| ||   ||| |||||||||| ||| |||||||| ||||| || || | ||
Sbjct: 28694828 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 28694769

                                                                            
Query: 449      catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508
                |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || |
Sbjct: 28694768 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 28694709

                                                          
Query: 509      atctctggatagtatgttgagattggtagcattgntgcacaa 550
                 |||||||||||| || ||||||||||||||||| |||||||
Sbjct: 28694708 ttctctggatagtgtgctgagattggtagcattgttgcacaa 28694667



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 8        cgtatgcaaataaacaagcgacccaa 33
                ||||||||||||||||||||| ||||
Sbjct: 28695193 cgtatgcaaataaacaagcgatccaa 28695168



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>dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0666E12
          Length = 47765

 Score =  345 bits (174), Expect = 9e-92
 Identities = 345/402 (85%), Gaps = 3/402 (0%)
 Strand = Plus / Minus

                                                                         
Query: 152   acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211
             |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || |
Sbjct: 43081 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 43022

                                                                         
Query: 212   gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 43021 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 42962

                                                                         
Query: 272   catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331
             |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || ||||
Sbjct: 42961 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 42902

                                                                         
Query: 332   caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388
             | || ||  | ||||||||||| || ||||||||||||||||| || |||   |||||||
Sbjct: 42901 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 42842

                                                                         
Query: 389   tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448
                 | |||| ||   ||| |||||||||| ||| |||||||| ||||| || || | ||
Sbjct: 42841 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 42782

                                                                         
Query: 449   catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508
             |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || |
Sbjct: 42781 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 42722

                                                       
Query: 509   atctctggatagtatgttgagattggtagcattgntgcacaa 550
              |||||||||||| || ||||||||||||||||| |||||||
Sbjct: 42721 ttctctggatagtgtgctgagattggtagcattgttgcacaa 42680



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 8     cgtatgcaaataaacaagcgacccaa 33
             ||||||||||||||||||||| ||||
Sbjct: 43206 cgtatgcaaataaacaagcgatccaa 43181



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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0459B01
          Length = 163087

 Score =  345 bits (174), Expect = 9e-92
 Identities = 345/402 (85%), Gaps = 3/402 (0%)
 Strand = Plus / Minus

                                                                         
Query: 152   acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211
             |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || |
Sbjct: 11641 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 11582

                                                                         
Query: 212   gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11581 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 11522

                                                                         
Query: 272   catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331
             |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || ||||
Sbjct: 11521 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 11462

                                                                         
Query: 332   caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388
             | || ||  | ||||||||||| || ||||||||||||||||| || |||   |||||||
Sbjct: 11461 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 11402

                                                                         
Query: 389   tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448
                 | |||| ||   ||| |||||||||| ||| |||||||| ||||| || || | ||
Sbjct: 11401 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 11342

                                                                         
Query: 449   catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508
             |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || |
Sbjct: 11341 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 11282

                                                       
Query: 509   atctctggatagtatgttgagattggtagcattgntgcacaa 550
              |||||||||||| || ||||||||||||||||| |||||||
Sbjct: 11281 ttctctggatagtgtgctgagattggtagcattgttgcacaa 11240



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 8     cgtatgcaaataaacaagcgacccaa 33
             ||||||||||||||||||||| ||||
Sbjct: 11766 cgtatgcaaataaacaagcgatccaa 11741



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>dbj|AK066018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047D24, full
            insert sequence
          Length = 1624

 Score =  345 bits (174), Expect = 9e-92
 Identities = 345/402 (85%), Gaps = 3/402 (0%)
 Strand = Plus / Minus

                                                                        
Query: 152  acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211
            |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || |
Sbjct: 1442 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 1383

                                                                        
Query: 212  gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1382 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 1323

                                                                        
Query: 272  catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331
            |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || ||||
Sbjct: 1322 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 1263

                                                                        
Query: 332  caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388
            | || ||  | ||||||||||| || ||||||||||||||||| || |||   |||||||
Sbjct: 1262 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 1203

                                                                        
Query: 389  tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448
                | |||| ||   ||| |||||||||| ||| |||||||| ||||| || || | ||
Sbjct: 1202 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 1143

                                                                        
Query: 449  catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508
            |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || |
Sbjct: 1142 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 1083

                                                      
Query: 509  atctctggatagtatgttgagattggtagcattgntgcacaa 550
             |||||||||||| || ||||||||||||||||| |||||||
Sbjct: 1082 ttctctggatagtgtgctgagattggtagcattgttgcacaa 1041



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 8    cgtatgcaaataaacaagcgacccaa 33
            ||||||||||||||||||||| ||||
Sbjct: 1567 cgtatgcaaataaacaagcgatccaa 1542



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>emb|AJ495787.1|OSA495787 Oryza sativa (japonica cultivar-group) mRNA for TOM1 protein
          Length = 1740

 Score =  337 bits (170), Expect = 2e-89
 Identities = 344/402 (85%), Gaps = 3/402 (0%)
 Strand = Plus / Minus

                                                                        
Query: 152  acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211
            |||||||||| ||| |||| |||||||||||||| || |||||| |||||| | | || |
Sbjct: 1441 acggtatttaaaagctgataaggtcatctttcttcggatcctgctttttgggcccttctt 1382

                                                                        
Query: 212  gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1381 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 1322

                                                                        
Query: 272  catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331
            |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || ||||
Sbjct: 1321 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 1262

                                                                        
Query: 332  caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388
            | || ||  | ||||||||||| || ||||||||||||||||| || |||   |||||||
Sbjct: 1261 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 1202

                                                                        
Query: 389  tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448
                | |||| ||   ||| |||||||||| ||| |||||||| ||||| || || | ||
Sbjct: 1201 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 1142

                                                                        
Query: 449  catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508
            |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || |
Sbjct: 1141 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 1082

                                                      
Query: 509  atctctggatagtatgttgagattggtagcattgntgcacaa 550
             |||||||||||| || ||||||||||||||||| |||||||
Sbjct: 1081 ttctctggatagtgtgctgagattggtagcattgttgcacaa 1040



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 8    cgtatgcaaataaacaagcgacccaa 33
            ||||||||||||||||||||| ||||
Sbjct: 1566 cgtatgcaaataaacaagcgatccaa 1541



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>emb|AJ234603.1|HVU234603 Hordeum vulgare genomic DNA fragment; clone MWG0872.rev
          Length = 305

 Score =  230 bits (116), Expect = 4e-57
 Identities = 126/130 (96%)
 Strand = Plus / Minus

                                                                       
Query: 421 tcgtatttggatagcactttctgtacctcatcgttcacactcaaggcctcaaagagcaag 480
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 305 tcgtatttgggtagcactttctgtacctcatcgttcacactcaagccctcaaagagcaag 246

                                                                       
Query: 481 gcctcgttgtctccagccgtctcnatgaatctctggatagtatgttgagattggtagcat 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcctcgttgtctccagccgtctcgatgaatctctggatagtatgttgagattggtagcat 186

                     
Query: 541 tgntgcacaa 550
           || |||||||
Sbjct: 185 tgttgcacaa 176



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>gb|AY104127.1| Zea mays PCO110287 mRNA sequence
          Length = 1870

 Score =  228 bits (115), Expect = 2e-56
 Identities = 291/347 (83%), Gaps = 5/347 (1%)
 Strand = Plus / Minus

                                                                        
Query: 208  tcctgggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggata 267
            |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct: 1464 tcctgggagctgctacctcccttcttgccaaatatcatctcgtcgagatcatcaaggatg 1405

                                                                        
Query: 268  tcatcatcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcg 327
            |||||||| || |||||| ||||||  || ||||||||||||||||| ||||| || || 
Sbjct: 1404 tcatcatctccacctgacgttgctctcgcggcagctggttttctgacaagggcgtcttca 1345

                                                                        
Query: 328  ttgccaacagtcacggaatcttcatgctccgtggcaattggtatgaccactgg---ctgt 384
            ||||||||||      |||||||||||||||  ||||| |||||||| |||||    |||
Sbjct: 1344 ttgccaacagcattcaaatcttcatgctccgcagcaatcggtatgacaactggtacatgt 1285

                                                                        
Query: 385  tctgtacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgt 444
            |||| | || | || ||| |||||| ||||||||| ||||| || ||||  |||||||| 
Sbjct: 1284 tctgcatgctcggaggccctgggctgcttcatctcctcgtacttcgataatactttctgg 1225

                                                                        
Query: 445  acctcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcn 504
            | |||||||||||| |||||||||||||||||||  || || ||||||||| | ||||| 
Sbjct: 1224 atctcatcgttcacgctcaaggcctcaaagagcacagcttcattgtctccaacggtctca 1165

                                                           
Query: 505  atgaatc-tctggatagtatgttgagattggtagcattgntgcacaa 550
            || |||| |||||||||| || ||||||||||||||||| |||||||
Sbjct: 1164 at-aatcatctggatagtgtgctgagattggtagcattgttgcacaa 1119



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>ref|NM_197898.1| Oryza sativa (japonica cultivar-group) hepatocyte growth
           factor-regulated tyrosine kinase substrate-like protein
           (OSJNBa0035H01.5), mRNA
          Length = 1554

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                       
Query: 448 tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507
           |||||||  |||||||| ||||||||||||   ||||||||||| ||||||||||| |||
Sbjct: 988 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 929

                      
Query: 508 aatctctggat 518
           | |||||||||
Sbjct: 928 attctctggat 918



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  cccttcttgccaaatatcat 245
            ||||||||||||||||||||
Sbjct: 1189 cccttcttgccaaatatcat 1170



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>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
             sequence
          Length = 64582

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                         
Query: 448   tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507
             |||||||  |||||||| ||||||||||||   ||||||||||| ||||||||||| |||
Sbjct: 49765 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 49706

                        
Query: 508   aatctctggat 518
             | |||||||||
Sbjct: 49705 attctctggat 49695



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   cccttcttgccaaatatcat 245
             ||||||||||||||||||||
Sbjct: 49966 cccttcttgccaaatatcat 49947



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>emb|AJ495791.1|OSA495791 Oryza sativa (japonica cultivar-group) mRNA for TOM2 protein
          Length = 1606

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 448  tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507
            |||||||  |||||||| ||||||||||||   ||||||||||| ||||||||||| |||
Sbjct: 1004 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 945

                       
Query: 508  aatctctggat 518
            | |||||||||
Sbjct: 944  attctctggat 934



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  cccttcttgccaaatatcat 245
            ||||||||||||||||||||
Sbjct: 1205 cccttcttgccaaatatcat 1186



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                            
Query: 448      tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507
                |||||||  |||||||| ||||||||||||   ||||||||||| ||||||||||| |||
Sbjct: 22534047 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 22533988

                           
Query: 508      aatctctggat 518
                | |||||||||
Sbjct: 22533987 attctctggat 22533977



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 226      cccttcttgccaaatatcat 245
                ||||||||||||||||||||
Sbjct: 22534248 cccttcttgccaaatatcat 22534229



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                            
Query: 448      tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507
                |||||||  |||||||| ||||||||||||   ||||||||||| ||||||||||| |||
Sbjct: 22546515 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 22546456

                           
Query: 508      aatctctggat 518
                | |||||||||
Sbjct: 22546455 attctctggat 22546445



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 226      cccttcttgccaaatatcat 245
                ||||||||||||||||||||
Sbjct: 22546716 cccttcttgccaaatatcat 22546697



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>gb|DQ455535.1| Medicago truncatula cDNA-AFLP fragment BT43M32_486 sequence
          Length = 336

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 408 cttcttcatctcttcgtatttggatagcactttctgtacctcatcgttcacactcaaggc 467
           |||||||| |||||| |||||||| || || || || | |||||| || ||| |||||||
Sbjct: 171 cttcttcaactcttcatatttggagagaaccttatgaatctcatcatttacattcaaggc 230

                       
Query: 468 ctcaaagagcaa 479
           |||| |||||||
Sbjct: 231 ctcacagagcaa 242



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>gb|AC018812.5|AC018812 Homo sapiens chromosome 3 clone RP11-161D20 map 3p, complete sequence
          Length = 169199

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 211    tgggaactgcttcctcccttcttgcc 236
              |||||||| |||||||||||||||||
Sbjct: 137894 tgggaactccttcctcccttcttgcc 137919



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>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence
          Length = 189097

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 211    tgggaactgcttcctcccttcttgcc 236
              |||||||| |||||||||||||||||
Sbjct: 156196 tgggaactccttcctcccttcttgcc 156171



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>emb|CR394546.9| Zebrafish DNA sequence from clone CH211-212I14 in linkage group 16,
             complete sequence
          Length = 174132

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 408   cttcttcatctcttcgtattt 428
             |||||||||||||||||||||
Sbjct: 33648 cttcttcatctcttcgtattt 33628



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>gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosome 9, complete sequence
          Length = 182831

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   tttagaagttgattaggtcat 178
             |||||||||||||||||||||
Sbjct: 11701 tttagaagttgattaggtcat 11721



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>gb|AC023202.8| Homo sapiens chromosome 8, clone RP11-203E8, complete sequence
          Length = 161447

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 158   tttagaagttgattaggtcat 178
             |||||||||||||||||||||
Sbjct: 33785 tttagaagttgattaggtcat 33765



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>gb|AC108685.4| Homo sapiens X BAC RP11-323F16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 178333

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 154   ggtatttagaagttgattaggtcat 178
             |||||||||||| ||||||||||||
Sbjct: 55752 ggtatttagaaggtgattaggtcat 55728



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>gb|AC091194.7| Homo sapiens chromosome 8, clone RP11-780J19, complete sequence
          Length = 201322

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   tttagaagttgattaggtcat 178
             |||||||||||||||||||||
Sbjct: 15798 tttagaagttgattaggtcat 15818



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>gb|AC106713.3| Homo sapiens X BAC RP11-770A12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 125790

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 154    ggtatttagaagttgattaggtcat 178
              |||||||||||| ||||||||||||
Sbjct: 124168 ggtatttagaaggtgattaggtcat 124192



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>emb|CT030709.6| Mouse DNA sequence from clone RP23-268C22 on chromosome 9, complete
              sequence
          Length = 206089

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 158    tttagaagttgattaggtcat 178
              |||||||||||||||||||||
Sbjct: 108517 tttagaagttgattaggtcat 108497



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>ref|NM_180503.1| Arabidopsis thaliana protein transporter AT5G16880 transcript variant
            AT5G16880.3 mRNA, complete cds
          Length = 1502

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 229  ttcttgccaaatatcatctcatcgagatcatc 260
            ||||| || |||||||||||||| ||||||||
Sbjct: 1225 ttcttaccgaatatcatctcatcaagatcatc 1194



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>ref|NM_121694.2| Arabidopsis thaliana protein transporter AT5G16880 transcript variant
            AT5G16880.1 mRNA, complete cds
          Length = 1579

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 229  ttcttgccaaatatcatctcatcgagatcatc 260
            ||||| || |||||||||||||| ||||||||
Sbjct: 1302 ttcttaccgaatatcatctcatcaagatcatc 1271



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>ref|NM_180502.1| Arabidopsis thaliana protein transporter AT5G16880 transcript variant
            AT5G16880.2 mRNA, complete cds
          Length = 1579

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 229  ttcttgccaaatatcatctcatcgagatcatc 260
            ||||| || |||||||||||||| ||||||||
Sbjct: 1302 ttcttaccgaatatcatctcatcaagatcatc 1271



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>gb|AY248666.1| Citrus tristeza virus isolate T318 haplotype E20 p20 protein gene,
           partial cds
          Length = 515

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 395 cagatgccatgggcttcttc 414
           ||||||||||||||||||||
Sbjct: 290 cagatgccatgggcttcttc 309



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>gb|AC159879.2| Mus musculus BAC clone RP24-497H22 from chromosome 12, complete sequence
          Length = 201836

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    aagttgattaggtcatcttt 182
              ||||||||||||||||||||
Sbjct: 120692 aagttgattaggtcatcttt 120711



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>emb|AL121993.7|HSDJ776P7 Human DNA sequence from clone RP4-776P7 on chromosome 1p13.1-13.3
            Contains the 3' end of a novel gene (FLJ34497), the WDR3
            gene for WD repeat domain 3, the 5' end of the GDAP2 gene
            for ganglioside induced differentiation associated
            protein 2 and a CPG island, complete sequence
          Length = 98062

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 433  agcactttctgtacctcatc 452
            ||||||||||||||||||||
Sbjct: 2681 agcactttctgtacctcatc 2662



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>emb|AL391141.1|ATF2K13 Arabidopsis thaliana DNA chromosome 5, BAC clone F2K13 (ESSA project)
          Length = 98101

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 229  ttcttgccaaatatcatctcatcgagatcatc 260
            ||||| || |||||||||||||| ||||||||
Sbjct: 8280 ttcttaccgaatatcatctcatcaagatcatc 8249



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>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence
          Length = 173808

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 411   cttcatctcttcgtatttggatagcactttct 442
             |||| ||||||||||||||||| |||||||||
Sbjct: 41922 cttcctctcttcgtatttggat-gcactttct 41892



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>gb|AY062640.1| Arabidopsis thaliana TOM (target of myb1)-like protein (F2K13_30)
            mRNA, complete cds
          Length = 1545

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 229  ttcttgccaaatatcatctcatcgagatcatc 260
            ||||| || |||||||||||||| ||||||||
Sbjct: 1268 ttcttaccgaatatcatctcatcaagatcatc 1237



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>gb|AY056786.1| Arabidopsis thaliana AT5g16880/F2K13_30 mRNA, complete cds
          Length = 1542

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 229  ttcttgccaaatatcatctcatcgagatcatc 260
            ||||| || |||||||||||||| ||||||||
Sbjct: 1303 ttcttaccgaatatcatctcatcaagatcatc 1272



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 30       ccaatccctaactgaatgtacgtgcagtgcag 61
                |||||| ||| |||||| ||||||||||||||
Sbjct: 21844406 ccaatcactagctgaatctacgtgcagtgcag 21844437



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>gb|AY085140.1| Arabidopsis thaliana clone 1330 mRNA, complete sequence
          Length = 1540

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 229  ttcttgccaaatatcatctcatcgagatcatc 260
            ||||| || |||||||||||||| ||||||||
Sbjct: 1301 ttcttaccgaatatcatctcatcaagatcatc 1270



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>gb|AC092275.3| Homo sapiens chromosome 16 clone CTC-786C10, complete sequence
          Length = 191996

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   tgggaactgcttcctccctt 230
             ||||||||||||||||||||
Sbjct: 85111 tgggaactgcttcctccctt 85092



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>gb|BT002553.1| Arabidopsis thaliana TOM (target of myb1)-like protein (At5g16880)
            mRNA, complete cds
          Length = 1388

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 229  ttcttgccaaatatcatctcatcgagatcatc 260
            ||||| || |||||||||||||| ||||||||
Sbjct: 1136 ttcttaccgaatatcatctcatcaagatcatc 1105



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>dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0610D01
          Length = 146418

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 30     ccaatccctaactgaatgtacgtgcagtgcag 61
              |||||| ||| |||||| ||||||||||||||
Sbjct: 102487 ccaatcactagctgaatctacgtgcagtgcag 102518



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>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0006A22
          Length = 190690

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 30    ccaatccctaactgaatgtacgtgcagtgcag 61
             |||||| ||| |||||| ||||||||||||||
Sbjct: 66891 ccaatcactagctgaatctacgtgcagtgcag 66922



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>dbj|AK067871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126G20, full
           insert sequence
          Length = 1169

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 cccttcttgccaaatatcat 245
           ||||||||||||||||||||
Sbjct: 792 cccttcttgccaaatatcat 773


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,356,108
Number of Sequences: 3902068
Number of extensions: 4356108
Number of successful extensions: 78227
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 78050
Number of HSP's gapped (non-prelim): 178
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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