Clone Name | rbasd23g01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467289.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1624 Score = 345 bits (174), Expect = 9e-92 Identities = 345/402 (85%), Gaps = 3/402 (0%) Strand = Plus / Minus Query: 152 acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211 |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || | Sbjct: 1442 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 1383 Query: 212 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1382 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 1323 Query: 272 catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331 |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || |||| Sbjct: 1322 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 1263 Query: 332 caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388 | || || | ||||||||||| || ||||||||||||||||| || ||| ||||||| Sbjct: 1262 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 1203 Query: 389 tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448 | |||| || ||| |||||||||| ||| |||||||| ||||| || || | || Sbjct: 1202 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 1143 Query: 449 catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508 |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || | Sbjct: 1142 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 1083 Query: 509 atctctggatagtatgttgagattggtagcattgntgcacaa 550 |||||||||||| || ||||||||||||||||| ||||||| Sbjct: 1082 ttctctggatagtgtgctgagattggtagcattgttgcacaa 1041 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 cgtatgcaaataaacaagcgacccaa 33 ||||||||||||||||||||| |||| Sbjct: 1567 cgtatgcaaataaacaagcgatccaa 1542
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 345 bits (174), Expect = 9e-92 Identities = 345/402 (85%), Gaps = 3/402 (0%) Strand = Plus / Minus Query: 152 acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211 |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || | Sbjct: 28695068 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 28695009 Query: 212 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28695008 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 28694949 Query: 272 catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331 |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || |||| Sbjct: 28694948 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 28694889 Query: 332 caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388 | || || | ||||||||||| || ||||||||||||||||| || ||| ||||||| Sbjct: 28694888 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 28694829 Query: 389 tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448 | |||| || ||| |||||||||| ||| |||||||| ||||| || || | || Sbjct: 28694828 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 28694769 Query: 449 catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508 |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || | Sbjct: 28694768 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 28694709 Query: 509 atctctggatagtatgttgagattggtagcattgntgcacaa 550 |||||||||||| || ||||||||||||||||| ||||||| Sbjct: 28694708 ttctctggatagtgtgctgagattggtagcattgttgcacaa 28694667 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 cgtatgcaaataaacaagcgacccaa 33 ||||||||||||||||||||| |||| Sbjct: 28695193 cgtatgcaaataaacaagcgatccaa 28695168
>dbj|AP005868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0666E12 Length = 47765 Score = 345 bits (174), Expect = 9e-92 Identities = 345/402 (85%), Gaps = 3/402 (0%) Strand = Plus / Minus Query: 152 acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211 |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || | Sbjct: 43081 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 43022 Query: 212 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 43021 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 42962 Query: 272 catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331 |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || |||| Sbjct: 42961 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 42902 Query: 332 caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388 | || || | ||||||||||| || ||||||||||||||||| || ||| ||||||| Sbjct: 42901 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 42842 Query: 389 tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448 | |||| || ||| |||||||||| ||| |||||||| ||||| || || | || Sbjct: 42841 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 42782 Query: 449 catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508 |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || | Sbjct: 42781 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 42722 Query: 509 atctctggatagtatgttgagattggtagcattgntgcacaa 550 |||||||||||| || ||||||||||||||||| ||||||| Sbjct: 42721 ttctctggatagtgtgctgagattggtagcattgttgcacaa 42680 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 cgtatgcaaataaacaagcgacccaa 33 ||||||||||||||||||||| |||| Sbjct: 43206 cgtatgcaaataaacaagcgatccaa 43181
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 345 bits (174), Expect = 9e-92 Identities = 345/402 (85%), Gaps = 3/402 (0%) Strand = Plus / Minus Query: 152 acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211 |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || | Sbjct: 11641 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 11582 Query: 212 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 11581 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 11522 Query: 272 catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331 |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || |||| Sbjct: 11521 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 11462 Query: 332 caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388 | || || | ||||||||||| || ||||||||||||||||| || ||| ||||||| Sbjct: 11461 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 11402 Query: 389 tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448 | |||| || ||| |||||||||| ||| |||||||| ||||| || || | || Sbjct: 11401 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 11342 Query: 449 catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508 |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || | Sbjct: 11341 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 11282 Query: 509 atctctggatagtatgttgagattggtagcattgntgcacaa 550 |||||||||||| || ||||||||||||||||| ||||||| Sbjct: 11281 ttctctggatagtgtgctgagattggtagcattgttgcacaa 11240 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 cgtatgcaaataaacaagcgacccaa 33 ||||||||||||||||||||| |||| Sbjct: 11766 cgtatgcaaataaacaagcgatccaa 11741
>dbj|AK066018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047D24, full insert sequence Length = 1624 Score = 345 bits (174), Expect = 9e-92 Identities = 345/402 (85%), Gaps = 3/402 (0%) Strand = Plus / Minus Query: 152 acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211 |||||||||| ||| ||||||||||||||||||| || |||||| |||||| | | || | Sbjct: 1442 acggtatttaaaagctgattaggtcatctttcttcggatcctgctttttgggcccttctt 1383 Query: 212 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1382 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 1323 Query: 272 catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331 |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || |||| Sbjct: 1322 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 1263 Query: 332 caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388 | || || | ||||||||||| || ||||||||||||||||| || ||| ||||||| Sbjct: 1262 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 1203 Query: 389 tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448 | |||| || ||| |||||||||| ||| |||||||| ||||| || || | || Sbjct: 1202 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 1143 Query: 449 catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508 |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || | Sbjct: 1142 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 1083 Query: 509 atctctggatagtatgttgagattggtagcattgntgcacaa 550 |||||||||||| || ||||||||||||||||| ||||||| Sbjct: 1082 ttctctggatagtgtgctgagattggtagcattgttgcacaa 1041 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 cgtatgcaaataaacaagcgacccaa 33 ||||||||||||||||||||| |||| Sbjct: 1567 cgtatgcaaataaacaagcgatccaa 1542
>emb|AJ495787.1|OSA495787 Oryza sativa (japonica cultivar-group) mRNA for TOM1 protein Length = 1740 Score = 337 bits (170), Expect = 2e-89 Identities = 344/402 (85%), Gaps = 3/402 (0%) Strand = Plus / Minus Query: 152 acggtatttagaagttgattaggtcatctttctttgggtcctgccttttggacacgtcct 211 |||||||||| ||| |||| |||||||||||||| || |||||| |||||| | | || | Sbjct: 1441 acggtatttaaaagctgataaggtcatctttcttcggatcctgctttttgggcccttctt 1382 Query: 212 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggatatcat 271 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1381 gggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcaaggatatcat 1322 Query: 272 catcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcgttgc 331 |||| || |||||| ||||||||| | ||||||||||||||||||||||||| || |||| Sbjct: 1321 catctccacctgaccttgctcgagaaccagctggttttctgaccagggcatcttcattgc 1262 Query: 332 caacagtcacggaatcttcatgctccgtggcaattggtatgaccactggc---tgttctg 388 | || || | ||||||||||| || ||||||||||||||||| || ||| ||||||| Sbjct: 1261 cgaccgtagcagaatcttcatgttctgtggcaattggtatgactaccggccgttgttctg 1202 Query: 389 tacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgtacct 448 | |||| || ||| |||||||||| ||| |||||||| ||||| || || | || Sbjct: 1201 cgttctcagacgctgcgggtttcttcatctgttcatatttggacagcaccttttggatct 1142 Query: 449 catcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatga 508 |||| |||||||||||||||||||| |||| |||||| ||||||||||| ||||| || | Sbjct: 1141 catcattcacactcaaggcctcaaaaagcatggcctcattgtctccagcagtctcaatca 1082 Query: 509 atctctggatagtatgttgagattggtagcattgntgcacaa 550 |||||||||||| || ||||||||||||||||| ||||||| Sbjct: 1081 ttctctggatagtgtgctgagattggtagcattgttgcacaa 1040 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 cgtatgcaaataaacaagcgacccaa 33 ||||||||||||||||||||| |||| Sbjct: 1566 cgtatgcaaataaacaagcgatccaa 1541
>emb|AJ234603.1|HVU234603 Hordeum vulgare genomic DNA fragment; clone MWG0872.rev Length = 305 Score = 230 bits (116), Expect = 4e-57 Identities = 126/130 (96%) Strand = Plus / Minus Query: 421 tcgtatttggatagcactttctgtacctcatcgttcacactcaaggcctcaaagagcaag 480 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 305 tcgtatttgggtagcactttctgtacctcatcgttcacactcaagccctcaaagagcaag 246 Query: 481 gcctcgttgtctccagccgtctcnatgaatctctggatagtatgttgagattggtagcat 540 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 245 gcctcgttgtctccagccgtctcgatgaatctctggatagtatgttgagattggtagcat 186 Query: 541 tgntgcacaa 550 || ||||||| Sbjct: 185 tgttgcacaa 176
>gb|AY104127.1| Zea mays PCO110287 mRNA sequence Length = 1870 Score = 228 bits (115), Expect = 2e-56 Identities = 291/347 (83%), Gaps = 5/347 (1%) Strand = Plus / Minus Query: 208 tcctgggaactgcttcctcccttcttgccaaatatcatctcatcgagatcatcgaggata 267 |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 1464 tcctgggagctgctacctcccttcttgccaaatatcatctcgtcgagatcatcaaggatg 1405 Query: 268 tcatcatcgccgcctgacattgctcgagcagcagctggttttctgaccagggcatcctcg 327 |||||||| || |||||| |||||| || ||||||||||||||||| ||||| || || Sbjct: 1404 tcatcatctccacctgacgttgctctcgcggcagctggttttctgacaagggcgtcttca 1345 Query: 328 ttgccaacagtcacggaatcttcatgctccgtggcaattggtatgaccactgg---ctgt 384 |||||||||| ||||||||||||||| ||||| |||||||| ||||| ||| Sbjct: 1344 ttgccaacagcattcaaatcttcatgctccgcagcaatcggtatgacaactggtacatgt 1285 Query: 385 tctgtacgcgcagatgccatgggcttcttcatctcttcgtatttggatagcactttctgt 444 |||| | || | || ||| |||||| ||||||||| ||||| || |||| |||||||| Sbjct: 1284 tctgcatgctcggaggccctgggctgcttcatctcctcgtacttcgataatactttctgg 1225 Query: 445 acctcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcn 504 | |||||||||||| ||||||||||||||||||| || || ||||||||| | ||||| Sbjct: 1224 atctcatcgttcacgctcaaggcctcaaagagcacagcttcattgtctccaacggtctca 1165 Query: 505 atgaatc-tctggatagtatgttgagattggtagcattgntgcacaa 550 || |||| |||||||||| || ||||||||||||||||| ||||||| Sbjct: 1164 at-aatcatctggatagtgtgctgagattggtagcattgttgcacaa 1119
>ref|NM_197898.1| Oryza sativa (japonica cultivar-group) hepatocyte growth factor-regulated tyrosine kinase substrate-like protein (OSJNBa0035H01.5), mRNA Length = 1554 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 448 tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507 ||||||| |||||||| |||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 988 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 929 Query: 508 aatctctggat 518 | ||||||||| Sbjct: 928 attctctggat 918 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cccttcttgccaaatatcat 245 |||||||||||||||||||| Sbjct: 1189 cccttcttgccaaatatcat 1170
>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete sequence Length = 64582 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 448 tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507 ||||||| |||||||| |||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 49765 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 49706 Query: 508 aatctctggat 518 | ||||||||| Sbjct: 49705 attctctggat 49695 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cccttcttgccaaatatcat 245 |||||||||||||||||||| Sbjct: 49966 cccttcttgccaaatatcat 49947
>emb|AJ495791.1|OSA495791 Oryza sativa (japonica cultivar-group) mRNA for TOM2 protein Length = 1606 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 448 tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507 ||||||| |||||||| |||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 1004 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 945 Query: 508 aatctctggat 518 | ||||||||| Sbjct: 944 attctctggat 934 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cccttcttgccaaatatcat 245 |||||||||||||||||||| Sbjct: 1205 cccttcttgccaaatatcat 1186
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 448 tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507 ||||||| |||||||| |||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 22534047 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 22533988 Query: 508 aatctctggat 518 | ||||||||| Sbjct: 22533987 attctctggat 22533977 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cccttcttgccaaatatcat 245 |||||||||||||||||||| Sbjct: 22534248 cccttcttgccaaatatcat 22534229
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 71.9 bits (36), Expect = 2e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 448 tcatcgttcacactcaaggcctcaaagagcaaggcctcgttgtctccagccgtctcnatg 507 ||||||| |||||||| |||||||||||| ||||||||||| ||||||||||| ||| Sbjct: 22546515 tcatcgtggacactcaatgcctcaaagagctgagcctcgttgtcaccagccgtctcaatg 22546456 Query: 508 aatctctggat 518 | ||||||||| Sbjct: 22546455 attctctggat 22546445 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cccttcttgccaaatatcat 245 |||||||||||||||||||| Sbjct: 22546716 cccttcttgccaaatatcat 22546697
>gb|DQ455535.1| Medicago truncatula cDNA-AFLP fragment BT43M32_486 sequence Length = 336 Score = 48.1 bits (24), Expect = 0.031 Identities = 60/72 (83%) Strand = Plus / Plus Query: 408 cttcttcatctcttcgtatttggatagcactttctgtacctcatcgttcacactcaaggc 467 |||||||| |||||| |||||||| || || || || | |||||| || ||| ||||||| Sbjct: 171 cttcttcaactcttcatatttggagagaaccttatgaatctcatcatttacattcaaggc 230 Query: 468 ctcaaagagcaa 479 |||| ||||||| Sbjct: 231 ctcacagagcaa 242
>gb|AC018812.5|AC018812 Homo sapiens chromosome 3 clone RP11-161D20 map 3p, complete sequence Length = 169199 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 211 tgggaactgcttcctcccttcttgcc 236 |||||||| ||||||||||||||||| Sbjct: 137894 tgggaactccttcctcccttcttgcc 137919
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 211 tgggaactgcttcctcccttcttgcc 236 |||||||| ||||||||||||||||| Sbjct: 156196 tgggaactccttcctcccttcttgcc 156171
>emb|CR394546.9| Zebrafish DNA sequence from clone CH211-212I14 in linkage group 16, complete sequence Length = 174132 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 cttcttcatctcttcgtattt 428 ||||||||||||||||||||| Sbjct: 33648 cttcttcatctcttcgtattt 33628
>gb|AC160124.3| Mus musculus BAC clone RP23-297P22 from chromosome 9, complete sequence Length = 182831 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 tttagaagttgattaggtcat 178 ||||||||||||||||||||| Sbjct: 11701 tttagaagttgattaggtcat 11721
>gb|AC023202.8| Homo sapiens chromosome 8, clone RP11-203E8, complete sequence Length = 161447 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 tttagaagttgattaggtcat 178 ||||||||||||||||||||| Sbjct: 33785 tttagaagttgattaggtcat 33765
>gb|AC108685.4| Homo sapiens X BAC RP11-323F16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178333 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 154 ggtatttagaagttgattaggtcat 178 |||||||||||| |||||||||||| Sbjct: 55752 ggtatttagaaggtgattaggtcat 55728
>gb|AC091194.7| Homo sapiens chromosome 8, clone RP11-780J19, complete sequence Length = 201322 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 tttagaagttgattaggtcat 178 ||||||||||||||||||||| Sbjct: 15798 tttagaagttgattaggtcat 15818
>gb|AC106713.3| Homo sapiens X BAC RP11-770A12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125790 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 ggtatttagaagttgattaggtcat 178 |||||||||||| |||||||||||| Sbjct: 124168 ggtatttagaaggtgattaggtcat 124192
>emb|CT030709.6| Mouse DNA sequence from clone RP23-268C22 on chromosome 9, complete sequence Length = 206089 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 tttagaagttgattaggtcat 178 ||||||||||||||||||||| Sbjct: 108517 tttagaagttgattaggtcat 108497
>ref|NM_180503.1| Arabidopsis thaliana protein transporter AT5G16880 transcript variant AT5G16880.3 mRNA, complete cds Length = 1502 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 ttcttgccaaatatcatctcatcgagatcatc 260 ||||| || |||||||||||||| |||||||| Sbjct: 1225 ttcttaccgaatatcatctcatcaagatcatc 1194
>ref|NM_121694.2| Arabidopsis thaliana protein transporter AT5G16880 transcript variant AT5G16880.1 mRNA, complete cds Length = 1579 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 ttcttgccaaatatcatctcatcgagatcatc 260 ||||| || |||||||||||||| |||||||| Sbjct: 1302 ttcttaccgaatatcatctcatcaagatcatc 1271
>ref|NM_180502.1| Arabidopsis thaliana protein transporter AT5G16880 transcript variant AT5G16880.2 mRNA, complete cds Length = 1579 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 ttcttgccaaatatcatctcatcgagatcatc 260 ||||| || |||||||||||||| |||||||| Sbjct: 1302 ttcttaccgaatatcatctcatcaagatcatc 1271
>gb|AY248666.1| Citrus tristeza virus isolate T318 haplotype E20 p20 protein gene, partial cds Length = 515 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 cagatgccatgggcttcttc 414 |||||||||||||||||||| Sbjct: 290 cagatgccatgggcttcttc 309
>gb|AC159879.2| Mus musculus BAC clone RP24-497H22 from chromosome 12, complete sequence Length = 201836 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 aagttgattaggtcatcttt 182 |||||||||||||||||||| Sbjct: 120692 aagttgattaggtcatcttt 120711
>emb|AL121993.7|HSDJ776P7 Human DNA sequence from clone RP4-776P7 on chromosome 1p13.1-13.3 Contains the 3' end of a novel gene (FLJ34497), the WDR3 gene for WD repeat domain 3, the 5' end of the GDAP2 gene for ganglioside induced differentiation associated protein 2 and a CPG island, complete sequence Length = 98062 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 agcactttctgtacctcatc 452 |||||||||||||||||||| Sbjct: 2681 agcactttctgtacctcatc 2662
>emb|AL391141.1|ATF2K13 Arabidopsis thaliana DNA chromosome 5, BAC clone F2K13 (ESSA project) Length = 98101 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 ttcttgccaaatatcatctcatcgagatcatc 260 ||||| || |||||||||||||| |||||||| Sbjct: 8280 ttcttaccgaatatcatctcatcaagatcatc 8249
>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence Length = 173808 Score = 40.1 bits (20), Expect = 7.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 411 cttcatctcttcgtatttggatagcactttct 442 |||| ||||||||||||||||| ||||||||| Sbjct: 41922 cttcctctcttcgtatttggat-gcactttct 41892
>gb|AY062640.1| Arabidopsis thaliana TOM (target of myb1)-like protein (F2K13_30) mRNA, complete cds Length = 1545 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 ttcttgccaaatatcatctcatcgagatcatc 260 ||||| || |||||||||||||| |||||||| Sbjct: 1268 ttcttaccgaatatcatctcatcaagatcatc 1237
>gb|AY056786.1| Arabidopsis thaliana AT5g16880/F2K13_30 mRNA, complete cds Length = 1542 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 ttcttgccaaatatcatctcatcgagatcatc 260 ||||| || |||||||||||||| |||||||| Sbjct: 1303 ttcttaccgaatatcatctcatcaagatcatc 1272
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 30 ccaatccctaactgaatgtacgtgcagtgcag 61 |||||| ||| |||||| |||||||||||||| Sbjct: 21844406 ccaatcactagctgaatctacgtgcagtgcag 21844437
>gb|AY085140.1| Arabidopsis thaliana clone 1330 mRNA, complete sequence Length = 1540 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 ttcttgccaaatatcatctcatcgagatcatc 260 ||||| || |||||||||||||| |||||||| Sbjct: 1301 ttcttaccgaatatcatctcatcaagatcatc 1270
>gb|AC092275.3| Homo sapiens chromosome 16 clone CTC-786C10, complete sequence Length = 191996 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tgggaactgcttcctccctt 230 |||||||||||||||||||| Sbjct: 85111 tgggaactgcttcctccctt 85092
>gb|BT002553.1| Arabidopsis thaliana TOM (target of myb1)-like protein (At5g16880) mRNA, complete cds Length = 1388 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 ttcttgccaaatatcatctcatcgagatcatc 260 ||||| || |||||||||||||| |||||||| Sbjct: 1136 ttcttaccgaatatcatctcatcaagatcatc 1105
>dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0610D01 Length = 146418 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 30 ccaatccctaactgaatgtacgtgcagtgcag 61 |||||| ||| |||||| |||||||||||||| Sbjct: 102487 ccaatcactagctgaatctacgtgcagtgcag 102518
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 30 ccaatccctaactgaatgtacgtgcagtgcag 61 |||||| ||| |||||| |||||||||||||| Sbjct: 66891 ccaatcactagctgaatctacgtgcagtgcag 66922
>dbj|AK067871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126G20, full insert sequence Length = 1169 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cccttcttgccaaatatcat 245 |||||||||||||||||||| Sbjct: 792 cccttcttgccaaatatcat 773 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,356,108 Number of Sequences: 3902068 Number of extensions: 4356108 Number of successful extensions: 78227 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 78050 Number of HSP's gapped (non-prelim): 178 length of query: 550 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 527 effective length of database: 17,143,297,704 effective search space: 9034517890008 effective search space used: 9034517890008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)