ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23f20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC017096.8| Homo sapiens BAC clone RP11-530J6 from 2, complet... 42 1.1
2emb|AL592308.3| Human DNA sequence from clone RP13-610P22 on chr... 40 4.5
3gb|AC012097.8| Drosophila melanogaster, chromosome X, region 16F... 40 4.5
4gb|AC012163.13|AC012163 Drosophila melanogaster, chromosome X, r... 40 4.5
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
6dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
7dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
8emb|AL359398.2|CNS05TE1 Human chromosome 14 DNA sequence BAC R-3... 40 4.5
9gb|AE003507.3| Drosophila melanogaster chromosome X, section 59 ... 40 4.5
10emb|AL139354.6|CNS01DXK Human chromosome 14 DNA sequence BAC R-9... 40 4.5
11emb|AL133167.4|CNS01DU1 Human chromosome 14 DNA sequence BAC R-1... 40 4.5

>gb|AC017096.8| Homo sapiens BAC clone RP11-530J6 from 2, complete sequence
          Length = 132063

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   taacttgtctccttgccactc 156
             |||||||||||||||||||||
Sbjct: 63888 taacttgtctccttgccactc 63868



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>emb|AL592308.3| Human DNA sequence from clone RP13-610P22 on chromosome 1, complete
            sequence
          Length = 170581

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 86   gaaggaaacagtaggatattaccttctt 113
            |||||||||||||||||| | |||||||
Sbjct: 3230 gaaggaaacagtaggataattccttctt 3203



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>gb|AC012097.8| Drosophila melanogaster, chromosome X, region 16F-16F, BAC clone
             BACR29H04, complete sequence
          Length = 155670

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ctttcccttatgttttcctt 85
             ||||||||||||||||||||
Sbjct: 28472 ctttcccttatgttttcctt 28491



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>gb|AC012163.13|AC012163 Drosophila melanogaster, chromosome X, region 16F-16F, BAC clone
             BACR17D02, complete sequence
          Length = 186748

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    ctttcccttatgttttcctt 85
             ||||||||||||||||||||
Sbjct: 84142 ctttcccttatgttttcctt 84123



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 32       gattgattccaaagcatatt 51
                ||||||||||||||||||||
Sbjct: 23318170 gattgattccaaagcatatt 23318189



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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1103C09
          Length = 163996

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    gattgattccaaagcatatt 51
             ||||||||||||||||||||
Sbjct: 43868 gattgattccaaagcatatt 43887



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>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451D05
          Length = 148381

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     gattgattccaaagcatatt 51
              ||||||||||||||||||||
Sbjct: 104912 gattgattccaaagcatatt 104931



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>emb|AL359398.2|CNS05TE1 Human chromosome 14 DNA sequence BAC R-369C8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176399

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ttgttttctgattgattcca 42
             ||||||||||||||||||||
Sbjct: 57716 ttgttttctgattgattcca 57735



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>gb|AE003507.3| Drosophila melanogaster chromosome X, section 59 of 74 of the complete
              sequence
          Length = 299804

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     ctttcccttatgttttcctt 85
              ||||||||||||||||||||
Sbjct: 139315 ctttcccttatgttttcctt 139296



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>emb|AL139354.6|CNS01DXK Human chromosome 14 DNA sequence BAC R-945F5 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201539

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ttgttttctgattgattcca 42
              ||||||||||||||||||||
Sbjct: 186793 ttgttttctgattgattcca 186812



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>emb|AL133167.4|CNS01DU1 Human chromosome 14 DNA sequence BAC R-185P18 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163096

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    ctttcccttatgttttcctt 85
             ||||||||||||||||||||
Sbjct: 76596 ctttcccttatgttttcctt 76577


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,250,494
Number of Sequences: 3902068
Number of extensions: 2250494
Number of successful extensions: 40150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40122
Number of HSP's gapped (non-prelim): 28
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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