ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23f13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SIP1_YEAST (P32578) Protein SIP1 32 1.6
2TRPM2_HUMAN (O94759) Transient receptor potential cation channel... 29 7.8
3YDRD_SCHPO (O13747) Hypothetical RING finger protein C16E8.13 in... 29 7.8

>SIP1_YEAST (P32578) Protein SIP1|
          Length = 863

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
 Frame = -3

Query: 451 KPQHARWKQIHSSADDLKQG--RLHS-----NVIQEGLRTAQL--LHFIVNSSNAVFNLQ 299
           K + A+ K+I S ++  +     LHS     +++  GL    L  LH I+N + + ++  
Sbjct: 414 KTKKAQNKKIRSVSNSRRSSFASLHSLQSRKSILTNGLNLQPLHPLHPIINDNESQYSAP 473

Query: 298 QHSSQYDHAN-MNKVCSIRLLNSEEHIIV 215
           QH     H+N M+ + SI   NS E+ +V
Sbjct: 474 QHREISHHSNSMSSMSSISSTNSTENTLV 502



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>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M|
           member 2 (EC 3.6.1.13) (Long transient receptor
           potential channel 2) (LTrpC2) (LTrpC-2) (Transient
           receptor potential channel 7) (TrpC7)
           (Estrogen-responsive element-associated
          Length = 1503

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 184 KCQRK*LLRQQKLMGRIFISQSAVWNKTTCVGIVLHFRTL 65
           +C RK   R QKL+ R+    S  W KTTC+ + L  + +
Sbjct: 692 ECYRKDEERAQKLLTRV----SEAWGKTTCLQLALEAKDM 727



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>YDRD_SCHPO (O13747) Hypothetical RING finger protein C16E8.13 in chromosome I|
          Length = 547

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/83 (30%), Positives = 29/83 (34%)
 Frame = +3

Query: 138 LPISFCCLSNYFLWHF*LCSVITEQYTIICSSLFSRRMLQTLFMLA*SYCELCCCKLKTA 317
           LP    CL         + S IT   TI+C   F    LQ       S C +C    K  
Sbjct: 205 LPTCVVCLER-------MDSSITGLITIVCQHTFHCPCLQKW---GNSSCPVCRYTQKVQ 254

Query: 318 FDEFTMKCRS*AVLSPSWITLLC 386
             EF  KC         WI L+C
Sbjct: 255 SSEFQSKCTVCCYDKDLWICLIC 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,055,513
Number of Sequences: 219361
Number of extensions: 1469433
Number of successful extensions: 3677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3670
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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