Clone Name | rbasd23f13 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SIP1_YEAST (P32578) Protein SIP1 | 32 | 1.6 | 2 | TRPM2_HUMAN (O94759) Transient receptor potential cation channel... | 29 | 7.8 | 3 | YDRD_SCHPO (O13747) Hypothetical RING finger protein C16E8.13 in... | 29 | 7.8 |
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>SIP1_YEAST (P32578) Protein SIP1| Length = 863 Score = 31.6 bits (70), Expect = 1.6 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%) Frame = -3 Query: 451 KPQHARWKQIHSSADDLKQG--RLHS-----NVIQEGLRTAQL--LHFIVNSSNAVFNLQ 299 K + A+ K+I S ++ + LHS +++ GL L LH I+N + + ++ Sbjct: 414 KTKKAQNKKIRSVSNSRRSSFASLHSLQSRKSILTNGLNLQPLHPLHPIINDNESQYSAP 473 Query: 298 QHSSQYDHAN-MNKVCSIRLLNSEEHIIV 215 QH H+N M+ + SI NS E+ +V Sbjct: 474 QHREISHHSNSMSSMSSISSTNSTENTLV 502
>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M| member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen-responsive element-associated Length = 1503 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -3 Query: 184 KCQRK*LLRQQKLMGRIFISQSAVWNKTTCVGIVLHFRTL 65 +C RK R QKL+ R+ S W KTTC+ + L + + Sbjct: 692 ECYRKDEERAQKLLTRV----SEAWGKTTCLQLALEAKDM 727
>YDRD_SCHPO (O13747) Hypothetical RING finger protein C16E8.13 in chromosome I| Length = 547 Score = 29.3 bits (64), Expect = 7.8 Identities = 25/83 (30%), Positives = 29/83 (34%) Frame = +3 Query: 138 LPISFCCLSNYFLWHF*LCSVITEQYTIICSSLFSRRMLQTLFMLA*SYCELCCCKLKTA 317 LP CL + S IT TI+C F LQ S C +C K Sbjct: 205 LPTCVVCLER-------MDSSITGLITIVCQHTFHCPCLQKW---GNSSCPVCRYTQKVQ 254 Query: 318 FDEFTMKCRS*AVLSPSWITLLC 386 EF KC WI L+C Sbjct: 255 SSEFQSKCTVCCYDKDLWICLIC 277 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,055,513 Number of Sequences: 219361 Number of extensions: 1469433 Number of successful extensions: 3677 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3574 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3670 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)