Clone Name | rbasd23f13 |
---|---|
Clone Library Name | barley_pub |
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14) genes, complete cds; and unknown gene Length = 43606 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 292 tatgttgctgtaaattaaagactgcatttgacgaattcacgatgaaa 338 |||||||| ||||||||||||||||||| || ||||||| ||||||| Sbjct: 34159 tatgttgccgtaaattaaagactgcattcgatgaattcatgatgaaa 34205 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 211 aatatacaattatatgttcctcgctattcagcaggc 246 ||||||||| ||| |||||||| |||||||||||| Sbjct: 10173 aatatacaagtatgtgttcctcattattcagcaggc 10208
>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds Length = 20754 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 302 taaattaaagactgcatttgacgaattcacgatgaaat 339 |||||||| |||||||||||| ||||||||||| |||| Sbjct: 15287 taaattaatgactgcatttgatgaattcacgataaaat 15250
>gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, complete sequence Length = 193024 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 acttcctttggcatttctagct 190 |||||||||||||||||||||| Sbjct: 131465 acttcctttggcatttctagct 131444
>gb|AY105027.1| Zea mays PCO081602 mRNA sequence Length = 1570 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 26 agctgtaaagaagaaaaagaag 47 |||||||||||||||||||||| Sbjct: 422 agctgtaaagaagaaaaagaag 443
>dbj|AP001866.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2317D23, complete sequence Length = 78200 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 acttcctttggcatttctagct 190 |||||||||||||||||||||| Sbjct: 34464 acttcctttggcatttctagct 34443
>gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, complete sequence Length = 202878 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 gctgtaaagaagaaaaagaag 47 ||||||||||||||||||||| Sbjct: 17043 gctgtaaagaagaaaaagaag 17063
>ref|XM_958658.1| Neurospora crassa OR74A hypothetical protein (NCU07472.1) partial mRNA Length = 1731 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 ctggggtttgatgatccccgt 463 ||||||||||||||||||||| Sbjct: 864 ctggggtttgatgatccccgt 884
>ref|XM_327757.1| Neurospora crassa OR74A hypothetical protein (NCU07472.1) partial mRNA Length = 1731 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 ctggggtttgatgatccccgt 463 ||||||||||||||||||||| Sbjct: 864 ctggggtttgatgatccccgt 884
>gb|AC132401.4| Mus musculus BAC clone RP23-404A8 from chromosome 3, complete sequence Length = 200657 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 agcatgctggggtttgatgat 457 ||||||||||||||||||||| Sbjct: 138231 agcatgctggggtttgatgat 138251
>gb|BC085135.1| Mus musculus cDNA clone MGC:105209 IMAGE:5718488, complete cds Length = 1965 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 1615 ctgtaaagaagaaaaagaag 1634
>gb|BC076604.1| Mus musculus nucleolar protein 5, mRNA (cDNA clone MGC:100119 IMAGE:30630088), complete cds Length = 1994 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 1646 ctgtaaagaagaaaaagaag 1665
>gb|AC098157.8| Rattus norvegicus X BAC CH230-75N19 (Children's Hospital Oakland Research Institute) complete sequence Length = 233894 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cagagtcctgaagtggagaa 84 |||||||||||||||||||| Sbjct: 162704 cagagtcctgaagtggagaa 162685
>ref|NM_018868.1| Mus musculus nucleolar protein 5 (Nol5), mRNA Length = 1879 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 1550 ctgtaaagaagaaaaagaag 1569
>gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome 13, complete sequence Length = 170866 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 taaagaagaaaaagaagcac 50 |||||||||||||||||||| Sbjct: 65071 taaagaagaaaaagaagcac 65090
>emb|AL928724.10| Zebrafish DNA sequence from clone CH211-51K14 in linkage group 15, complete sequence Length = 165299 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tgtaaattaaagactgcatt 319 |||||||||||||||||||| Sbjct: 52029 tgtaaattaaagactgcatt 52048
>gb|AC126053.3| Mus musculus BAC clone RP23-280L21 from chromosome 16, complete sequence Length = 217131 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 tatggatctgtttccagcgagcat 441 ||||| |||||||||||||||||| Sbjct: 167885 tatggttctgtttccagcgagcat 167862
>gb|AC126934.4| Mus musculus BAC clone RP24-172H9 from chromosome 1, complete sequence Length = 138637 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 105272 ctgtaaagaagaaaaagaag 105253
>emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on chromosome 13, complete sequence Length = 81586 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 taaagaagaaaaagaagcac 50 |||||||||||||||||||| Sbjct: 50930 taaagaagaaaaagaagcac 50949
>emb|AL138804.16| Human DNA sequence from clone RP11-77C3 on chromosome 20 Contains the 3' part of the SIRPB2 gene for signal-regulatory protein beta 2, the 5' end of gene SIRP-beta 1, ESTs, STSs and GSSs, complete sequence Length = 48026 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 tcagtcattactgagcaatataca 218 ||||||||||||||||||| |||| Sbjct: 5699 tcagtcattactgagcaatgtaca 5722
>emb|AL049634.8|HSJ576H24 Human DNA sequence from clone RP4-576H24 on chromosome 20 Contains the PTPNS1L12 gene for protein tyrosine phosphatase (non-receptor type substrate 1-like 2), a PTPNS pseudogene and part of the SIRPB1 gene for signal regulatory protein beta 1, complete sequence Length = 115478 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 tcagtcattactgagcaatataca 218 ||||||||||||||||||| |||| Sbjct: 80149 tcagtcattactgagcaatgtaca 80172
>ref|XM_778863.1| PREDICTED: Strongylocentrotus purpuratus similar to dystonin isoform 1 (LOC578708), mRNA Length = 33630 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 caaactgcgctctgtgaaat 130 |||||||||||||||||||| Sbjct: 6678 caaactgcgctctgtgaaat 6697
>emb|BX546480.9| Zebrafish DNA sequence from clone DKEY-175C11, complete sequence Length = 203056 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 260 tttgttcatgttagcatgatcata 283 ||||||||| |||||||||||||| Sbjct: 57412 tttgttcatattagcatgatcata 57389
>dbj|AK134286.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930437A18 product:nucleolar protein 5, full insert sequence Length = 1674 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 1646 ctgtaaagaagaaaaagaag 1665
>gb|AC008686.8| Homo sapiens chromosome 19 clone CTB-5E10, complete sequence Length = 150192 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 25421 ctgtaaagaagaaaaagaag 25402
>dbj|AK034577.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430009J01 product:nucleolar protein 5, full insert sequence Length = 1312 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 299 ctgtaaagaagaaaaagaag 318
>dbj|AK044216.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930001M05 product:nucleolar protein 5, full insert sequence Length = 2587 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 1642 ctgtaaagaagaaaaagaag 1661
>gb|AF325196.1|AF325196 Triticum aestivum PST19 (Pst19), LRR19 (Lrr19), TAK19-1 (Tak19-1), and LRK19 (Lrk19) genes, complete cds Length = 35872 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 292 tatgttgctgtaaattaaagactgcatt 319 |||||||||||||| ||||||| ||||| Sbjct: 7508 tatgttgctgtaaactaaagaccgcatt 7535
>ref|NM_021754.1| Rattus norvegicus nucleolar protein 5 (Nol5), mRNA Length = 1980 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 1632 ctgtaaagaagaaaaagaag 1651
>gb|AY206771.1| Chlamydomonas reinhardtii flagella membrane glycoprotein 1A gene, complete cds Length = 24232 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 cgctgccggtgcccaccacc 498 |||||||||||||||||||| Sbjct: 17881 cgctgccggtgcccaccacc 17900
>emb|BX005374.5| Zebrafish DNA sequence from clone DKEY-29H23 in linkage group 15, complete sequence Length = 204318 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 tgtaaattaaagactgcatt 319 |||||||||||||||||||| Sbjct: 96013 tgtaaattaaagactgcatt 96032
>gb|AF194371.1|AF194371 Rattus norvegicus Nopp140 associated protein (NAP65) mRNA, complete cds Length = 1980 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 1632 ctgtaaagaagaaaaagaag 1651
>gb|U95739.1|HSU95739 Human chromosome 16p11.2-p12 BAC clone CIT987SK-224D6 complete sequence Length = 69015 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 65405 ctgtaaagaagaaaaagaag 65386
>gb|L20947.1|CREEZYC Chlamydomonas reinhardtii ezy-1 mRNA, 3' end of cds Length = 1449 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 tcgctgccggtgcccaccac 497 |||||||||||||||||||| Sbjct: 31 tcgctgccggtgcccaccac 12
>gb|L20946.1|CREEZYB Chlamydomonas reinhardtii ezy-1 mRNA, complete cds Length = 2148 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 tcgctgccggtgcccaccac 497 |||||||||||||||||||| Sbjct: 727 tcgctgccggtgcccaccac 708
>gb|L20945.1|CREEZYA Chlamydomonas reinhardtii ezy-1 mRNA, complete cds Length = 1904 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 tcgctgccggtgcccaccac 497 |||||||||||||||||||| Sbjct: 714 tcgctgccggtgcccaccac 695
>gb|AC147254.4| Mus musculus BAC clone RP24-147G7 from 1, complete sequence Length = 149476 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 62378 ctgtaaagaagaaaaagaag 62359
>gb|AF053232.1|AF053232 Mus musculus SIK similar protein mRNA, complete cds Length = 1879 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ctgtaaagaagaaaaagaag 47 |||||||||||||||||||| Sbjct: 1550 ctgtaaagaagaaaaagaag 1569
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gtaaagaagaaaaagaagca 49 |||||||||||||||||||| Sbjct: 63211 gtaaagaagaaaaagaagca 63230
>gb|AC149787.2| Gallus gallus BAC clone TAM31-60B9 from chromosome ul, complete sequence Length = 146640 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 taaagaagaaaaagaagcac 50 |||||||||||||||||||| Sbjct: 30763 taaagaagaaaaagaagcac 30744
>gb|AC152002.2| Ornithorhynchus anatinus chromosome UNK clone OABb-387A1, complete sequence Length = 131214 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 tgtaaagaagaaaaagaagcacga 52 |||||||||| ||||||||||||| Sbjct: 26346 tgtaaagaagcaaaagaagcacga 26369
>dbj|AP003065.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-31L22, complete sequences Length = 190102 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 490 cccaccacctgaaaaccacatctg 513 ||||||||||||||||||| |||| Sbjct: 95631 cccaccacctgaaaaccacctctg 95654 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,681,948 Number of Sequences: 3902068 Number of extensions: 5681948 Number of successful extensions: 133763 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133672 Number of HSP's gapped (non-prelim): 91 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)