ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4 53 5e-07
2TRP_DROME (P19334) Transient receptor potential protein 33 0.65
3CARA_SULSO (Q59968) Carbamoyl-phosphate synthase small chain (EC... 30 3.2

>RIN4_ARATH (Q8GYN5) RPM1-interacting protein 4|
          Length = 211

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = -1

Query: 416 SEESGRPLPKFGEWDVNDPASADGFTVIFNKARDEKKAG 300
           S E    +PKFG+WD N+P+SADG+T IFNK R+E+ +G
Sbjct: 141 SPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSG 179



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>TRP_DROME (P19334) Transient receptor potential protein|
          Length = 1275

 Score = 32.7 bits (73), Expect = 0.65
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 374  DVNDPASADGFTVIFNKARDEKKAGNGQDTESPCKDAR 261
            +V++ + ADG      K  D+KKAG+ +D + P KD++
Sbjct: 985  NVDEKSGADGKPGTMGKPTDDKKAGDDKDKQQPPKDSK 1022



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>CARA_SULSO (Q59968) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 367

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 249 HPLSPGVFARGFSILSIPSLFLIPGFVEYNCESI 350
           H +  G++ RGFSI+ +P  F     +EYN + I
Sbjct: 192 HGILYGLYKRGFSIVRVPCSFSASKIIEYNPKGI 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,426,144
Number of Sequences: 219361
Number of extensions: 1792744
Number of successful extensions: 4734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4734
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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