ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23f05 |
|---|---|
| Clone Library Name | barley_pub |
>IF4G2_HUMAN (P78344) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death-associated protein 5) (DAP-5) Length = 907 Score = 43.5 bits (101), Expect = 6e-04 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%) Frame = -1 Query: 572 AKDKITKLLE----EYESGGDVGEACKCIREMGMP-FFNHEVVKKALVMAMEKK---KEG 417 +K+++ KL E EY + G+ EA +REM P F E++ K +++++++ KE Sbjct: 540 SKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 599 Query: 416 TLALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 303 +L+ EGI T + + F V D L +DIP Sbjct: 600 ASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIP 637
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 43.5 bits (101), Expect = 6e-04 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Frame = -1 Query: 563 KITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKKK---EGTLALLHEC 393 K LLEEY + EA +CI E+ P ++ E+VK+A+ +A++K + + LL Sbjct: 626 KTASLLEEYFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLEHL 685 Query: 392 FGEGIITINQMTKGFSRVRDGLDDLALDIPDARDKF 285 + + + G L+D+ +D+P A +F Sbjct: 686 YTKKTFKTEDLENGCLLYGSLLEDIGIDLPKAPTQF 721
>IF4G2_BOVIN (Q95L46) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Fragment) Length = 136 Score = 43.5 bits (101), Expect = 6e-04 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%) Frame = -1 Query: 572 AKDKITKLLE----EYESGGDVGEACKCIREMGMP-FFNHEVVKKALVMAMEKK---KEG 417 +K+++ KL E EY + G+ EA +REM P F E++ K +++++++ KE Sbjct: 27 SKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 86 Query: 416 TLALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 303 +L+ EGI T + + F V D L +DIP Sbjct: 87 ASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIP 124
>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1402 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%) Frame = -1 Query: 578 EDAKDKITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGTLA 408 E+ + K ++EEY D+ EA +C++E+ P V+ + +E+ +E Sbjct: 1043 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGIESTLERSAIARERMGQ 1102 Query: 407 LLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 303 LLH+ G ++ Q +G + + +D+ +DIP Sbjct: 1103 LLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIP 1137
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Frame = -1 Query: 584 AVEDAKDKITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGT 414 +V++ + K ++EEY D+ EA +C++E+ P V+ + +E+ +E Sbjct: 1238 SVDEVEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHM 1297 Query: 413 LALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 303 LLH+ G ++ Q +G + +D+ +DIP Sbjct: 1298 GRLLHQLLCAGHLSTAQYYQGLYETLELAEDMEIDIP 1334
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 3/95 (3%) Frame = -1 Query: 578 EDAKDKITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGTLA 408 E+ + K ++EEY D+ EA +C++E+ P V+ + +E+ +E Sbjct: 1241 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQ 1300 Query: 407 LLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 303 LLH+ G ++ Q +G + + +D+ +DIP Sbjct: 1301 LLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIP 1335
>IF4G2_RABIT (P79398) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 907 Score = 41.2 bits (95), Expect = 0.003 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 8/98 (8%) Frame = -1 Query: 572 AKDKITKLLE----EYESGGDVGEACKCIREMGMP-FFNHEVVKKALVMAMEKK---KEG 417 +K+++ KL E EY + G+ EA ++EM P F E++ K +++++++ KE Sbjct: 540 SKEELLKLTETVVTEYLNSGNANEAVNGVKEMRAPKHFLPEMLSKVIILSLDRSDEDKEK 599 Query: 416 TLALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 303 +L+ EGI T + + F V D L +DIP Sbjct: 600 ASSLISLLKQEGIGTSDNFMQAFLNVLDQCPKLEVDIP 637
>IF4G2_MOUSE (Q62448) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 906 Score = 39.7 bits (91), Expect = 0.009 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 8/98 (8%) Frame = -1 Query: 572 AKDKITKLLE----EYESGGDVGEACKCIREMGMP-FFNHEVVKKALVMAMEKK---KEG 417 +K+++ KL E +Y + G+ +A +REM P F E++ K +++++++ KE Sbjct: 539 SKEELLKLTEAVVTDYLNSGNANDAVSGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 598 Query: 416 TLALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 303 +L+ EGI T + + F V + L +DIP Sbjct: 599 ASSLISLLKQEGIATSDNFMQAFLNVLEQCPKLEVDIP 636
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 38.9 bits (89), Expect = 0.015 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Frame = -1 Query: 578 EDAKDKITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGTLA 408 E+ + K +++E+ D EA +CI E+ H VK + +E+ ++ Sbjct: 1214 EEVERKSKSIIDEFLHINDFKEATQCIEELSAQGPLHVFVKVGVEFTLERSQITRDHMGH 1273 Query: 407 LLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 303 LL++ ++ KGFS + DD+A+DIP Sbjct: 1274 LLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIP 1308
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 38.5 bits (88), Expect = 0.020 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Frame = -1 Query: 578 EDAKDKITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGTLA 408 E+ + K +++E+ D EA +C+ E+ H V+ + +E+ ++ Sbjct: 1220 EELERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERSQITRDHMGQ 1279 Query: 407 LLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 303 LL++ ++ KGFS + DD+A+DIP Sbjct: 1280 LLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIP 1314
>HMWC_DESVH (P24092) High-molecular-weight cytochrome c precursor (Cytochrome| CC3) Length = 545 Score = 34.3 bits (77), Expect = 0.37 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 5/142 (3%) Frame = +3 Query: 102 ASETQTQMHTN*VGCTTLWLPASSRSSLMLPVCSVIGSSRSSNAERGYEPSVLLPILHVG 281 A+E + H N +GC T A ++ C + + S A E +G Sbjct: 103 AAELKEIYHANCIGCHTDLAKAGKKTGPQDGECRSCHNPKPSAASSWKE---------IG 153 Query: 282 EELVPGIRYVEGQIVKPVPDP*EPLGHLVDGYDPFAKALV-----QQSKRALFLLLHCHD 446 + R+V + +KPV DP + G YD +K LV + S RA CH Sbjct: 154 FDKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEASKKLVWGKNKEDSCRA------CHG 207 Query: 447 ERLLDHLMVEERHAHLTDALAC 512 E+ +D + AH T ++C Sbjct: 208 EKPVDKRPALDTAAH-TACISC 228
>ESR2_SPAAU (Q9W6M2) Estrogen receptor beta (ER-beta)| Length = 559 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +2 Query: 488 PSHGCT-CMLPLHHLRSRTPPGALLSCPWRPPRPI 589 PSHG LPLHHL++R G + PW P+ Sbjct: 89 PSHGHVGTTLPLHHLQARPQHGQAVQSPWVELSPL 123
>PUR4_XYLFT (Q87DN2) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1322 Score = 30.4 bits (67), Expect = 5.3 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -3 Query: 177 TAKTQAAIVWCSPPSSCAFAFAFLMHVPGLAS*VGQRAPLACL 49 TA+ Q W P + CA A G A +G+RAPLA L Sbjct: 688 TAREQMIGPWQLPLADCAITLAGFSSYAGEAFAIGERAPLALL 730
>DDL_XYLFT (Q87AG1) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 304 Score = 30.4 bits (67), Expect = 5.3 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = -1 Query: 581 VEDAKDKITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKKKEGTLAL 405 VE D++ +L + GG+ G ++ G+P+ +V+ AL M + K+ LAL Sbjct: 51 VERRFDRVFNVLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLAL 109
>DDL_XYLFA (Q9PF79) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 304 Score = 30.4 bits (67), Expect = 5.3 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = -1 Query: 581 VEDAKDKITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKKKEGTLAL 405 VE D++ +L + GG+ G ++ G+P+ +V+ AL M + K+ LAL Sbjct: 51 VERRFDRVFNVLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLAL 109
>SED5_YEAST (Q01590) Integral membrane protein SED5| Length = 340 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = -1 Query: 422 EGTLALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIPDARDKFLSYVENGKKNGWL 246 E T+ + F + + + + R+ +DD+ L+I A+ + L Y + K N WL Sbjct: 263 ESTIQEVGNLFQQLASMVQEQGEVIQRIDANVDDIDLNISGAQRELLKYFDRIKSNRWL 321
>I17RB_MOUSE (Q9JIP3) Interleukin-17 receptor B precursor (IL-17 receptor B)| (IL-17RB) (Interleukin-17B receptor) (IL-17B receptor) (IL-17 receptor homolog 1) (IL-17Rh1) (IL17Rh1) (IL-17ER) Length = 499 Score = 29.6 bits (65), Expect = 9.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -2 Query: 277 TWRMGRRTDGSYPLSALLLRL 215 TWR GR T S+P+S +LL L Sbjct: 308 TWRQGRSTKTSFPISTMLLPL 328
>5HT4R_RAT (Q62758) 5-hydroxytryptamine 4 receptor (5-HT-4) (Serotonin| receptor 4) (5-HT4) Length = 406 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 354 LGHLVDGYDPFAKALVQQS-KRALFLLLHCHDER 452 LG++ G +PF A + +S +RA ++L C DER Sbjct: 300 LGYINSGLNPFLYAFLNKSFRRAFLIILCCDDER 333
>5HT4R_MOUSE (P97288) 5-hydroxytryptamine 4 receptor (5-HT-4) (Serotonin| receptor 4) (5-HT4) Length = 388 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 354 LGHLVDGYDPFAKALVQQS-KRALFLLLHCHDER 452 LG++ G +PF A + +S +RA ++L C DER Sbjct: 300 LGYINSGLNPFLYAFLNKSFRRAFLIILCCDDER 333
>5HT4R_HUMAN (Q13639) 5-hydroxytryptamine 4 receptor (5-HT-4) (Serotonin| receptor 4) (5-HT4) Length = 388 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 354 LGHLVDGYDPFAKALVQQS-KRALFLLLHCHDER 452 LG++ G +PF A + +S +RA ++L C DER Sbjct: 300 LGYINSGLNPFLYAFLNKSFRRAFLIILCCDDER 333
>5HT4R_CAVPO (O70528) 5-hydroxytryptamine 4 receptor (5-HT-4) (Serotonin| receptor 4) (5-HT4) Length = 388 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 354 LGHLVDGYDPFAKALVQQS-KRALFLLLHCHDER 452 LG++ G +PF A + +S +RA ++L C DER Sbjct: 300 LGYINSGLNPFLYAFLNKSFRRAFLIILCCDDER 333
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 29.6 bits (65), Expect = 9.1 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Frame = -1 Query: 593 TGWAVEDAKDKITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKKKEGT 414 TG D + +LEE G + G+ K GMP N +K V G+ Sbjct: 182 TGMIASITDDGVVTMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVEVKGPYTFSIGS 241 Query: 413 LALLHECFGEGIIT-INQMTK-GFSRVRDGLDDLALDIPD 300 + L G+ T + TK F +R+ L D PD Sbjct: 242 VKDLGSAGYNGVFTQVKVPTKISFKSLRESLKDPEYVYPD 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,724,459 Number of Sequences: 219361 Number of extensions: 2439295 Number of successful extensions: 8102 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 7639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8092 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
