ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22p23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK060439.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
2gb|AF126742.1|AF126742 Zea mays bundle sheath defective protein ... 105 1e-19
3gb|AY111156.1| Zea mays CL1540_1 mRNA sequence 105 1e-19
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
5dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7gb|DQ497412.1| Musa acuminata bundle sheath defective protein 2 ... 60 7e-06
8ref|XM_549923.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.41
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
10dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
11dbj|AK066041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
12gb|L06436.1|PWARPT Powassan virus genomic RNA sequence, complete... 44 0.41
13gb|AC146162.2| Pan troglodytes BAC clone RP43-23P8 from 7, compl... 42 1.6
14ref|XM_540214.2| PREDICTED: Canis familiaris similar to semaphor... 42 1.6
15gb|AC145939.3| Pan troglodytes BAC clone RP43-18N13 from 7, comp... 42 1.6
16gb|AC092428.4| Homo sapiens BAC clone RP11-32P3 from 7, complete... 42 1.6
17gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Canc... 42 1.6
18gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Can... 42 1.6
19gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Canc... 42 1.6
20gb|AC115959.17| Mus musculus chromosome 1, clone RP24-65D16, com... 42 1.6
21emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on ch... 42 1.6
22emb|AL713990.16| Mouse DNA sequence from clone RP23-224N1 on chr... 42 1.6
23gb|AC154457.2| Mus musculus BAC clone RP24-159K2 from chromosome... 40 6.4
24gb|AC161767.4| Pan troglodytes BAC clone CH251-365K8 from chromo... 40 6.4
25gb|BT013252.1| Lycopersicon esculentum clone 134761F, mRNA sequence 40 6.4
26gb|AC125119.2| Mus musculus BAC clone RP24-266E24 from chromosom... 40 6.4
27gb|AC104885.8| Mus musculus chromosome 16, clone RP23-125P19, co... 40 6.4
28gb|AC006149.3| Homo sapiens PAC clone RP5-1078A23 from 7, comple... 40 6.4
29emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on ch... 40 6.4
30emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chro... 40 6.4
31gb|AC021630.11| Mus musculus chromosome 14, clone RP23-178B24, c... 40 6.4
32gb|AC008682.6| Homo sapiens chromosome 5 clone CTB-54G2, complet... 40 6.4
33gb|AF350499.1|AF350499 Mus musculus H+,K+-ATPase alpha 2 subunit... 40 6.4
34gb|AC090568.5| Homo sapiens chromosome 8, clone RP11-69I13, comp... 40 6.4
35gb|AC008827.6| Homo sapiens chromosome 5 clone CTD-2136P21, comp... 40 6.4
36gb|AC159267.2| Mus musculus BAC clone RP23-460B2 from chromosome... 40 6.4
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
38dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
39gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome... 40 6.4
40gb|AC154008.1| Mus musculus 6 BAC RP24-470H20 (Roswell Park Canc... 40 6.4
41gb|DQ020487.1| Sus scrofa clone BAC KNP_375G9, complete sequence 40 6.4
42dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
43dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
44dbj|AK101219.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
45dbj|AK059367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
46emb|BX293986.7| Mouse DNA sequence from clone RP24-492P10 on chr... 40 6.4
47gb|AC154608.3| Mus musculus BAC clone RP23-334N8 from chromosome... 40 6.4
48emb|AL591975.1| Listeria monocytogenes strain EGD, complete geno... 40 6.4
49emb|CT010472.8| Mouse DNA sequence from clone RP23-37H11 on chro... 40 6.4
50emb|AL672067.5| Mouse DNA sequence from clone RP23-5P1 on chromo... 40 6.4
51gb|AC136741.24| Mus musculus chromosome 7, clone RP23-172P1, com... 40 6.4
52emb|AL583884.20| Mouse DNA sequence from clone RP23-324B16 on ch... 40 6.4 
>dbj|AK060439.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-D08, full
           insert sequence
          Length = 767

 Score =  107 bits (54), Expect = 3e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                       
Query: 138 tcggcagtgctcataaatccacccaagaagccagcgccattgcagctcccacatagaatt 197
           |||| ||| ||||| |||||||| ||||||||||| ||||||||||| || || |  |||
Sbjct: 445 tcggaagtactcatgaatccacctaagaagccagcaccattgcagctaccgcacaagatt 386

                                                             
Query: 198 tcacgctttcctctgcaaagccagcataagcctccagctttgaatcggcc 247
           || ||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 385 tcccgctttcctctgcaaagccagcataatgctccagctttaaatcggcc 336
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>gb|AF126742.1|AF126742 Zea mays bundle sheath defective protein 2 (bsd2) mRNA, bsd2-B73
           allele, complete cds
          Length = 609

 Score =  105 bits (53), Expect = 1e-19
 Identities = 92/105 (87%)
 Strand = Plus / Minus

                                                                       
Query: 143 agtgctcataaatccacccaagaagccagcgccattgcagctcccacatagaatttcacg 202
           |||||| | ||||||||||||||||||||| ||||| ||| |||||||||| ||||||||
Sbjct: 430 agtgcttagaaatccacccaagaagccagcaccattacagttcccacataggatttcacg 371

                                                        
Query: 203 ctttcctctgcaaagccagcataagcctccagctttgaatcggcc 247
           ||| |||||||| | |||||||||   ||||||||| ||||||||
Sbjct: 370 cttgcctctgcacaaccagcataaagatccagctttaaatcggcc 326
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>gb|AY111156.1| Zea mays CL1540_1 mRNA sequence
          Length = 554

 Score =  105 bits (53), Expect = 1e-19
 Identities = 92/105 (87%)
 Strand = Plus / Minus

                                                                       
Query: 143 agtgctcataaatccacccaagaagccagcgccattgcagctcccacatagaatttcacg 202
           |||||| | ||||||||||||||||||||| ||||| ||| |||||||||| ||||||||
Sbjct: 430 agtgcttagaaatccacccaagaagccagcaccattacagttcccacataggatttcacg 371

                                                        
Query: 203 ctttcctctgcaaagccagcataagcctccagctttgaatcggcc 247
           ||| |||||||| | |||||||||   ||||||||| ||||||||
Sbjct: 370 cttgcctctgcacaaccagcataaagatccagctttaaatcggcc 326
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                            
Query: 138      tcggcagtgctcataaatccacccaagaagccagcgccattgcagctcccacatagaatt 197
                |||| ||| ||||| |||||||| ||||||||||| ||||||||||| || || |  |||
Sbjct: 13039495 tcggaagtactcatgaatccacctaagaagccagcaccattgcagctaccgcacaagatt 13039554

                               
Query: 198      tcacgctttcctctg 212
                || ||||||||||||
Sbjct: 13039555 tcccgctttcctctg 13039569



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 210      ctgcaaagccagcataagcctccagctttgaatcggcc 247
                |||||||||||||||||  |||||||||| ||||||||
Sbjct: 13039674 ctgcaaagccagcataatgctccagctttaaatcggcc 13039711
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>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0531C01
          Length = 158574

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                         
Query: 138   tcggcagtgctcataaatccacccaagaagccagcgccattgcagctcccacatagaatt 197
             |||| ||| ||||| |||||||| ||||||||||| ||||||||||| || || |  |||
Sbjct: 78296 tcggaagtactcatgaatccacctaagaagccagcaccattgcagctaccgcacaagatt 78355

                            
Query: 198   tcacgctttcctctg 212
             || ||||||||||||
Sbjct: 78356 tcccgctttcctctg 78370



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 210   ctgcaaagccagcataagcctccagctttgaatcggcc 247
             |||||||||||||||||  |||||||||| ||||||||
Sbjct: 78475 ctgcaaagccagcataatgctccagctttaaatcggcc 78512
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>dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0577H07
          Length = 126757

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                          
Query: 138    tcggcagtgctcataaatccacccaagaagccagcgccattgcagctcccacatagaatt 197
              |||| ||| ||||| |||||||| ||||||||||| ||||||||||| || || |  |||
Sbjct: 121872 tcggaagtactcatgaatccacctaagaagccagcaccattgcagctaccgcacaagatt 121931

                             
Query: 198    tcacgctttcctctg 212
              || ||||||||||||
Sbjct: 121932 tcccgctttcctctg 121946



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 210    ctgcaaagccagcataagcctccagctttgaatcggcc 247
              |||||||||||||||||  |||||||||| ||||||||
Sbjct: 122051 ctgcaaagccagcataatgctccagctttaaatcggcc 122088
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>gb|DQ497412.1| Musa acuminata bundle sheath defective protein 2 mRNA, partial cds
          Length = 308

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 144 gtgctcataaatccacccaagaagccagcgccattgcagctcccacatag 193
           ||||||||||| ||||| || |||||||| ||||||||| ||||||||||
Sbjct: 62  gtgctcataaagccacctaaaaagccagcaccattgcagttcccacatag 13
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>ref|XM_549923.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2276

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 313 cttcacaggcagtgcaaacaag 334
           ||||||||||||||||||||||
Sbjct: 34  cttcacaggcagtgcaaacaag 13
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 313    cttcacaggcagtgcaaacaag 334
              ||||||||||||||||||||||
Sbjct: 922598 cttcacaggcagtgcaaacaag 922619
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>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698G03
          Length = 147857

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 313   cttcacaggcagtgcaaacaag 334
             ||||||||||||||||||||||
Sbjct: 58043 cttcacaggcagtgcaaacaag 58064
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>dbj|AK066041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046E24, full
           insert sequence
          Length = 2277

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 313 cttcacaggcagtgcaaacaag 334
           ||||||||||||||||||||||
Sbjct: 34  cttcacaggcagtgcaaacaag 13
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>gb|L06436.1|PWARPT Powassan virus genomic RNA sequence, complete cds
          Length = 10839

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 272  cccacctcccttgcattgggtg 293
            ||||||||||||||||||||||
Sbjct: 7210 cccacctcccttgcattgggtg 7231
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>gb|AC146162.2| Pan troglodytes BAC clone RP43-23P8 from 7, complete sequence
          Length = 183434

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 381   tcctttgctgctgccttggcc 401
             |||||||||||||||||||||
Sbjct: 16104 tcctttgctgctgccttggcc 16124
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>ref|XM_540214.2| PREDICTED: Canis familiaris similar to semaphorin W (LOC483098), mRNA
          Length = 4485

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 382  cctttgctgctgccttggccttgag 406
            |||||||||||||| ||||||||||
Sbjct: 1754 cctttgctgctgccatggccttgag 1778
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>gb|AC145939.3| Pan troglodytes BAC clone RP43-18N13 from 7, complete sequence
          Length = 187077

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    tcctttgctgctgccttggcc 401
              |||||||||||||||||||||
Sbjct: 170974 tcctttgctgctgccttggcc 170954
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>gb|AC092428.4| Homo sapiens BAC clone RP11-32P3 from 7, complete sequence
          Length = 41823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 381   tcctttgctgctgccttggcc 401
             |||||||||||||||||||||
Sbjct: 17755 tcctttgctgctgccttggcc 17775
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>gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164595

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 43     cagatacaagtaaaaatgtta 63
              |||||||||||||||||||||
Sbjct: 147092 cagatacaagtaaaaatgtta 147072
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>gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157198

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    cagatacaagtaaaaatgtta 63
             |||||||||||||||||||||
Sbjct: 40956 cagatacaagtaaaaatgtta 40976
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>gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 174097

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     cagatacaagtaaaaatgtta 63
              |||||||||||||||||||||
Sbjct: 164662 cagatacaagtaaaaatgtta 164682
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>gb|AC115959.17| Mus musculus chromosome 1, clone RP24-65D16, complete sequence
          Length = 187431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   ccccacctcccttgcattggg 291
             |||||||||||||||||||||
Sbjct: 99242 ccccacctcccttgcattggg 99222
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>emb|AL928924.12| Mouse DNA sequence from clone RP23-307E15 on chromosome 2, complete
              sequence
          Length = 195936

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 216    agccagcataagcctccagctttga 240
              ||||||||||||||||| |||||||
Sbjct: 150315 agccagcataagcctccggctttga 150339
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>emb|AL713990.16| Mouse DNA sequence from clone RP23-224N1 on chromosome X, complete
              sequence
          Length = 163330

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 42     gcagatacaagtaaaaatgtt 62
              |||||||||||||||||||||
Sbjct: 160915 gcagatacaagtaaaaatgtt 160895
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>gb|AC154457.2| Mus musculus BAC clone RP24-159K2 from chromosome 17, complete sequence
          Length = 130975

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 259    cttccaaattctccccacctccct 282
              |||||||||||| |||||||||||
Sbjct: 117621 cttccaaattcttcccacctccct 117598
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>gb|AC161767.4| Pan troglodytes BAC clone CH251-365K8 from chromosome 7, complete
             sequence
          Length = 148248

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 328   aaacaagactgtatgccttctttt 351
             |||||||||||||||| |||||||
Sbjct: 82285 aaacaagactgtatgcattctttt 82262
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>gb|BT013252.1| Lycopersicon esculentum clone 134761F, mRNA sequence
          Length = 482

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 67 atctctcaaaatttgtcaaa 86
          ||||||||||||||||||||
Sbjct: 16 atctctcaaaatttgtcaaa 35
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>gb|AC125119.2| Mus musculus BAC clone RP24-266E24 from chromosome 6, complete sequence
          Length = 194445

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 259   cttccaaattctccccacctccct 282
             ||||||||| ||||||||||||||
Sbjct: 10493 cttccaaatcctccccacctccct 10516
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>gb|AC104885.8| Mus musculus chromosome 16, clone RP23-125P19, complete sequence
          Length = 211414

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   gtcttccaaattctccccac 276
             ||||||||||||||||||||
Sbjct: 24521 gtcttccaaattctccccac 24502
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>gb|AC006149.3| Homo sapiens PAC clone RP5-1078A23 from 7, complete sequence
          Length = 72010

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 328   aaacaagactgtatgccttctttt 351
             |||||||||||||||| |||||||
Sbjct: 21500 aaacaagactgtatgcattctttt 21477
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>emb|AL355355.25| Human DNA sequence from clone RP11-730A19 on chromosome 10 Contains the
             5' end of a novel gene (DKFZP761F241) (FLJ20925 FLJ38473),
             a ribosomal protein L5 (RPL5) pseudogene, the OPTN gene
             for optineurin, a small nuclear ribonucleoprotein
             polypeptide G (SNRPG) pseudogene, a pseudogene similar to
             part of COX10 homolog, cytochrome c oxidase assembly
             protein heme A: farnesyltransferase (yeast) (COX10), a
             novel pseudogene (FLJ10648 KIAA1525), a ribosomal protein
             L36A (RPL36A) pseudogene, the 5' end of the  MCM10 gene
             for MCM10 minichromosome maintenance deficient 10 (S.
             cerevisiae), a pseudogene similar to part of chromodomain
             protein Y chromosome 1 (CDY1) and two CpG islands,
             complete sequence
          Length = 196203

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   cagcgagagatggggcggag 442
             ||||||||||||||||||||
Sbjct: 83070 cagcgagagatggggcggag 83089
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>emb|AL645571.18| Mouse DNA sequence from clone RP23-39H1 on chromosome 11 Contains a
              general transcription factor II A, 1 (Gtf2a1) pseudogene,
              the 3' end of the Pkd1l1 gene for polycystic kidney disease
              1 like 1 and a heterogeneous nuclear ribonucleoprotein A3
              (Hnrpa3) pseudogene, complete sequence
          Length = 235198

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 259    cttccaaattctccccacctccct 282
              |||||| |||||||||||||||||
Sbjct: 203637 cttccagattctccccacctccct 203614
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>gb|AC021630.11| Mus musculus chromosome 14, clone RP23-178B24, complete sequence
          Length = 202804

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   ttgctgctgccttggccttg 404
             ||||||||||||||||||||
Sbjct: 41936 ttgctgctgccttggccttg 41917
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>gb|AC008682.6| Homo sapiens chromosome 5 clone CTB-54G2, complete sequence
          Length = 217221

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    aaatggtcttccaaattctc 271
              ||||||||||||||||||||
Sbjct: 195620 aaatggtcttccaaattctc 195639
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>gb|AF350499.1|AF350499 Mus musculus H+,K+-ATPase alpha 2 subunit (Hkalpha2) gene, complete
            cds
          Length = 34603

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 385  ttgctgctgccttggccttg 404
            ||||||||||||||||||||
Sbjct: 5855 ttgctgctgccttggccttg 5836
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>gb|AC090568.5| Homo sapiens chromosome 8, clone RP11-69I13, complete sequence
          Length = 166398

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 72    tcaaaatttgtcaaatacaacata 95
             ||||||||||| ||||||||||||
Sbjct: 76566 tcaaaatttgtgaaatacaacata 76543
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>gb|AC008827.6| Homo sapiens chromosome 5 clone CTD-2136P21, complete sequence
          Length = 68144

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    tctctcaaaatttgtcaaat 87
             ||||||||||||||||||||
Sbjct: 26048 tctctcaaaatttgtcaaat 26029
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>gb|AC159267.2| Mus musculus BAC clone RP23-460B2 from chromosome 14, complete sequence
          Length = 204629

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    cttggccttgagggaatgga 414
              ||||||||||||||||||||
Sbjct: 145718 cttggccttgagggaatgga 145699
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       atttgtcaaatacaacataa 96
                ||||||||||||||||||||
Sbjct: 18246839 atttgtcaaatacaacataa 18246820
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 343      ccttctttttggtagcttcg 362
                ||||||||||||||||||||
Sbjct: 11674914 ccttctttttggtagcttcg 11674933
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>gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome 7, complete
            sequence
          Length = 205980

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 142  cagtgctcataaatccacccaaga 165
            ||||||||| ||||||||||||||
Sbjct: 8078 cagtgctcagaaatccacccaaga 8055
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>gb|AC154008.1| Mus musculus 6 BAC RP24-470H20 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 139613

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 259   cttccaaattctccccacctccct 282
             ||||||||| ||||||||||||||
Sbjct: 82950 cttccaaatcctccccacctccct 82973
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>gb|DQ020487.1| Sus scrofa clone BAC KNP_375G9, complete sequence
          Length = 142071

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   attctccccacctcccttgc 285
             ||||||||||||||||||||
Sbjct: 22777 attctccccacctcccttgc 22758
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>dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0680C01
          Length = 145580

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   ccttctttttggtagcttcg 362
             ||||||||||||||||||||
Sbjct: 33073 ccttctttttggtagcttcg 33092
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>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0434E03
          Length = 142414

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    atttgtcaaatacaacataa 96
             ||||||||||||||||||||
Sbjct: 69151 atttgtcaaatacaacataa 69132
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>dbj|AK101219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031C14, full
            insert sequence
          Length = 1730

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  ccttctttttggtagcttcg 362
            ||||||||||||||||||||
Sbjct: 1107 ccttctttttggtagcttcg 1126
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>dbj|AK059367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E08, full
           insert sequence
          Length = 927

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 ccttctttttggtagcttcg 362
           ||||||||||||||||||||
Sbjct: 304 ccttctttttggtagcttcg 323
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>emb|BX293986.7| Mouse DNA sequence from clone RP24-492P10 on chromosome X, complete
              sequence
          Length = 114458

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 259    cttccaaattctccccacctccct 282
              ||||||||| ||||||||||||||
Sbjct: 114155 cttccaaatcctccccacctccct 114178
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>gb|AC154608.3| Mus musculus BAC clone RP23-334N8 from chromosome 16, complete sequence
          Length = 212928

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    gtcttccaaattctccccac 276
              ||||||||||||||||||||
Sbjct: 204117 gtcttccaaattctccccac 204098
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>emb|AL591975.1| Listeria monocytogenes strain EGD, complete genome, segment 3/12
          Length = 280050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     attccttggagcagatacaagtaa 55
              |||| |||||||||||||||||||
Sbjct: 247941 attctttggagcagatacaagtaa 247964
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>emb|CT010472.8| Mouse DNA sequence from clone RP23-37H11 on chromosome 13, complete
             sequence
          Length = 182622

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ttcctctgcaaagccagcat 224
             ||||||||||||||||||||
Sbjct: 49381 ttcctctgcaaagccagcat 49362
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>emb|AL672067.5| Mouse DNA sequence from clone RP23-5P1 on chromosome X, complete
            sequence
          Length = 225196

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 259  cttccaaattctccccacctccct 282
            ||||||||| ||||||||||||||
Sbjct: 1697 cttccaaatcctccccacctccct 1720
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>gb|AC136741.24| Mus musculus chromosome 7, clone RP23-172P1, complete sequence
          Length = 211802

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   cacaggcagtgcaaacaaga 335
             ||||||||||||||||||||
Sbjct: 84033 cacaggcagtgcaaacaaga 84014
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>emb|AL583884.20| Mouse DNA sequence from clone RP23-324B16 on chromosome 15, complete
              sequence
          Length = 202342

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     agtaaaaatgttacagatct 70
              ||||||||||||||||||||
Sbjct: 144551 agtaaaaatgttacagatct 144532


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,338,882
Number of Sequences: 3902068
Number of extensions: 4338882
Number of successful extensions: 84727
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84534
Number of HSP's gapped (non-prelim): 193
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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