ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22p19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110006.1| Zea mays CL38736_1 mRNA sequence 101 2e-18
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
3dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
4dbj|AK101689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-15
5dbj|AK071933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 7e-15
6gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 42 1.5
7gb|DQ141263.1| Pseudomonas syringae pv. phaseolicola strain NPS3... 42 1.5
8gb|AC046185.14| Homo sapiens chromosome 17, clone RP11-51F16, co... 42 1.5
9gb|AC115793.14| Mus musculus chromosome 9, clone RP23-400G18, co... 40 6.1
10gb|AC164634.3| Mus musculus BAC clone RP23-64E16 from chromosome... 40 6.1
11gb|AC084386.2| Mus musculus BAC clone RP23-61O2 from 17, complet... 40 6.1
12gb|AC155160.4| Mus musculus BAC clone RP24-510B6 from chromosome... 40 6.1
13gb|AC007564.10| Homo sapiens 12 BAC RP11-513P18 (Roswell Park Ca... 40 6.1
14gb|AC084660.1|CBRG46N08 Caenorhabditis briggsae cosmid G46N08, c... 40 6.1
15gb|AC011445.6|AC011445 Homo sapiens chromosome 19 clone CTC-246B... 40 6.1
16gb|AC007221.2|AC007221 Homo sapiens chromosome 16 clone RPCI-11_... 40 6.1
17emb|AL929417.11| Mouse DNA sequence from clone RP23-25M5 on chro... 40 6.1
18gb|AE000657.1| Aquifex aeolicus VF5, complete genome 40 6.1
19emb|AJ130944.1|LMI130944 Locusta migratoria mRNA for apolipophor... 40 6.1 
>gb|AY110006.1| Zea mays CL38736_1 mRNA sequence
          Length = 1286

 Score =  101 bits (51), Expect = 2e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                       
Query: 291 tcatgtttgtggcggcatgtttgcgtagaggaatgtgtagaagagtcccacctcgggcat 350
           |||||||| ||| |||||||||||||| |||||||||||||||||| |||| || |||||
Sbjct: 517 tcatgtttctggtggcatgtttgcgtacaggaatgtgtagaagagttccacttcaggcat 576

                                                          
Query: 351 gcttcggatggtctggatgtgcttgttcttgcttggttcctcgagca 397
            |||| |||| |||||||||  ||||||||| |||| ||||| ||||
Sbjct: 577 acttctgatgatctggatgtatttgttcttgtttggctcctcaagca 623
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                           
Query: 293     atgtttgtggcggcatgtttgcgtagaggaatgtgtagaagagtcccacctcgggcatgc 352
               |||||| ||| |||||||||||||||||||| ||||| |||||| |||| || ||||| |
Sbjct: 8535356 atgtttctggtggcatgtttgcgtagaggaaagtgtaaaagagttccacttcaggcatac 8535297

                                                            
Query: 353     ttcggatggtctggatgtgcttgttcttgcttggttcctcgagca 397
               |||||||  |||| ||||||||||||||   ||| ||||||||||
Sbjct: 8535296 ttcggataatctgaatgtgcttgttcttatctggctcctcgagca 8535252
to top
>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0079G12
          Length = 139796

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                         
Query: 293   atgtttgtggcggcatgtttgcgtagaggaatgtgtagaagagtcccacctcgggcatgc 352
             |||||| ||| |||||||||||||||||||| ||||| |||||| |||| || ||||| |
Sbjct: 56566 atgtttctggtggcatgtttgcgtagaggaaagtgtaaaagagttccacttcaggcatac 56507

                                                          
Query: 353   ttcggatggtctggatgtgcttgttcttgcttggttcctcgagca 397
             |||||||  |||| ||||||||||||||   ||| ||||||||||
Sbjct: 56506 ttcggataatctgaatgtgcttgttcttatctggctcctcgagca 56462
to top
>dbj|AK101689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059H01, full
            insert sequence
          Length = 1640

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                        
Query: 293  atgtttgtggcggcatgtttgcgtagaggaatgtgtagaagagtcccacctcgggcatgc 352
            |||||| ||| |||||||||||||||||||| ||||| |||||| |||| || ||||| |
Sbjct: 1237 atgtttctggtggcatgtttgcgtagaggaaagtgtaaaagagttccacttcaggcatac 1178

                                                         
Query: 353  ttcggatggtctggatgtgcttgttcttgcttggttcctcgagca 397
            |||||||  |||| ||||||||||||||   ||| ||||||||||
Sbjct: 1177 ttcggataatctgaatgtgcttgttcttatctggctcctcgagca 1133
to top
>dbj|AK071933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084C05, full
            insert sequence
          Length = 1775

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                        
Query: 293  atgtttgtggcggcatgtttgcgtagaggaatgtgtagaagagtcccacctcgggcatgc 352
            |||||| ||| |||||||||||||||||||| ||||| |||||| |||| || ||||| |
Sbjct: 1395 atgtttctggtggcatgtttgcgtagaggaaagtgtaaaagagttccacttcaggcatac 1336

                                                         
Query: 353  ttcggatggtctggatgtgcttgttcttgcttggttcctcgagca 397
            |||||||  |||| ||||||||||||||   ||| ||||||||||
Sbjct: 1335 ttcggataatctgaatgtgcttgttcttatctggctcctcgagca 1291
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 257     ggaagaaacatactcctttcc 277
               |||||||||||||||||||||
Sbjct: 4910930 ggaagaaacatactcctttcc 4910950
to top
>gb|DQ141263.1| Pseudomonas syringae pv. phaseolicola strain NPS3121 phaseolotoxin
             synthesis gene cluster, complete sequence
          Length = 30245

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 257   ggaagaaacatactcctttcc 277
             |||||||||||||||||||||
Sbjct: 26871 ggaagaaacatactcctttcc 26851
to top
>gb|AC046185.14| Homo sapiens chromosome 17, clone RP11-51F16, complete sequence
          Length = 173637

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    ttaaaaaagcaacaagtattt 40
             |||||||||||||||||||||
Sbjct: 62512 ttaaaaaagcaacaagtattt 62492
to top
>gb|AC115793.14| Mus musculus chromosome 9, clone RP23-400G18, complete sequence
          Length = 199109

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 49   aaccaagtaaaaattgaaagaact 72
            |||||||||||||| |||||||||
Sbjct: 3398 aaccaagtaaaaatagaaagaact 3421
to top
>gb|AC164634.3| Mus musculus BAC clone RP23-64E16 from chromosome 17, complete sequence
          Length = 204253

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 394   agcagcgttgagctcagttgggct 417
             |||| |||||||||||||||||||
Sbjct: 23904 agcaacgttgagctcagttgggct 23927
to top
>gb|AC084386.2| Mus musculus BAC clone RP23-61O2 from 17, complete sequence
          Length = 209523

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 394  agcagcgttgagctcagttgggct 417
            |||| |||||||||||||||||||
Sbjct: 3699 agcaacgttgagctcagttgggct 3676
to top
>gb|AC155160.4| Mus musculus BAC clone RP24-510B6 from chromosome 17, complete sequence
          Length = 208376

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 394    agcagcgttgagctcagttgggct 417
              |||| |||||||||||||||||||
Sbjct: 181106 agcaacgttgagctcagttgggct 181129
to top
>gb|AC007564.10| Homo sapiens 12 BAC RP11-513P18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 194397

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     aagtaaaaattgaaagaact 72
              ||||||||||||||||||||
Sbjct: 166843 aagtaaaaattgaaagaact 166824
to top
>gb|AC084660.1|CBRG46N08 Caenorhabditis briggsae cosmid G46N08, complete sequence
          Length = 37436

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    aaccaagtaaaaattgaaag 68
             ||||||||||||||||||||
Sbjct: 14886 aaccaagtaaaaattgaaag 14905
to top
>gb|AC011445.6|AC011445 Homo sapiens chromosome 19 clone CTC-246B18, complete sequence
          Length = 138538

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aaaagcaacaagtatttcac 43
             ||||||||||||||||||||
Sbjct: 66810 aaaagcaacaagtatttcac 66829
to top
>gb|AC007221.2|AC007221 Homo sapiens chromosome 16 clone RPCI-11_418I22, complete sequence
          Length = 230696

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    aaagaactcttgtttcctga 84
             ||||||||||||||||||||
Sbjct: 30340 aaagaactcttgtttcctga 30359
to top
>emb|AL929417.11| Mouse DNA sequence from clone RP23-25M5 on chromosome 2, complete
              sequence
          Length = 215389

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    atatacaggacacaaactca 132
              ||||||||||||||||||||
Sbjct: 121838 atatacaggacacaaactca 121819
to top
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     aaaaaagcaacaagtatttc 41
              ||||||||||||||||||||
Sbjct: 344716 aaaaaagcaacaagtatttc 344697
to top
>emb|AJ130944.1|LMI130944 Locusta migratoria mRNA for apolipophorin precursor protein
          Length = 10776

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  agaggaatgtgtagaagagt 336
            ||||||||||||||||||||
Sbjct: 7295 agaggaatgtgtagaagagt 7276


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,197,009
Number of Sequences: 3902068
Number of extensions: 4197009
Number of successful extensions: 70173
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70103
Number of HSP's gapped (non-prelim): 70
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top