ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPA2_KLULA (P54111) Guanine nucleotide-binding protein alpha-2 s... 30 5.4
2SCNAA_XENLA (P51167) Amiloride-sensitive sodium channel alpha-su... 30 7.0
3CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor 29 9.2

>GPA2_KLULA (P54111) Guanine nucleotide-binding protein alpha-2 subunit|
           (GP2-alpha)
          Length = 554

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 596 PGRNNRNRKVTVPNGVNGEKQQDAINGKPKSPVANGVN 483
           PG N+ NR+  V  G  G+K+QD  N K K  + N  +
Sbjct: 23  PGANDANRRNDVRKGA-GDKKQDKKNKKAKGSIVNAAS 59



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>SCNAA_XENLA (P51167) Amiloride-sensitive sodium channel alpha-subunit|
           (Epithelial Na+ channel alpha subunit) (Alpha ENaC)
           (Nonvoltage-gated sodium channel 1 alpha subunit)
           (SCNEA) (Alpha NaCH)
          Length = 632

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 136 MMIVRRQQEKKEELGEPNYLTRFPAPAFGDRSFMNPHV 249
           M+++ R   KK   GE   +   PAPAF D     PH+
Sbjct: 540 MILLHRYYYKKANEGEETTVVPTPAPAFADLEQQVPHI 577



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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 596 PGRNNRNRKVTVPNGVNGEKQQDAINGKPKSPVANGVNG 480
           PG      +  +P GV G K +D  +G P  P ANG+ G
Sbjct: 443 PGPRGERGEAGIP-GVPGAKGEDGKDGSPGEPGANGLPG 480


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,588,656
Number of Sequences: 219361
Number of extensions: 1270172
Number of successful extensions: 3255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3254
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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