Clone Name | rbasd22p16 |
---|---|
Clone Library Name | barley_pub |
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 807 bits (407), Expect = 0.0 Identities = 489/514 (95%), Gaps = 2/514 (0%) Strand = Plus / Minus Query: 18 tttttgcgatacaggctacaaacacttttacat-ctataggatctgcctgctactcaaaa 76 |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct: 814 tttttgcgatacagactgcaaacacttttacagactataggatctgcctgctactcaaa- 756 Query: 77 gtaccgcggacacacatatttacagatccacaagtaccgggcatgggctcctgcgcctct 136 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 755 gtaccgcggacacacatatttacagatccacaagtaccgggcatggactcctgcatctct 696 Query: 137 aaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctatta 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 695 aaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctatta 636 Query: 197 cttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagctg 256 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 635 cttgattgtcctggtttactatcggtaatctgtggatcttcttcctgagcatcagagctg 576 Query: 257 cggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctg 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 575 cggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctg 516 Query: 317 caatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgaccccga 376 ||||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||| Sbjct: 515 caatcttcgtctttggcccatgtgaagccctcacgtgatcgctcttgacgacgaccccga 456 Query: 377 cacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagtgtccttcaa 436 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 455 cacatcggcgggcactgtcgacaaccgggaggcctgacacgagctggaagtggccttcaa 396 Query: 437 cctccaccagtgcctggtccgctgtggccatcagcacgggcgtcgacatggcctcgcgca 496 |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 395 cctccaccagcgcctgctccgctgtgaccatcagcacgggcgtcgacatggcctcacgca 336 Query: 497 ggagcgcccctnggtgctgatcgccggcgtggga 530 |||| | ||| | |||||||||||||| ||||| Sbjct: 335 ggagaggcccccgctgctgatcgccggcatggga 302
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 793 bits (400), Expect = 0.0 Identities = 492/519 (94%), Gaps = 3/519 (0%) Strand = Plus / Plus Query: 16 tatttttgcgatacaggctacaaacacttttacat-ctataggatctgcctgctactcaa 74 ||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| Sbjct: 93 tatttttgcgatacaggctacaa-cacttttacagactatag-atctgcctgctactcaa 150 Query: 75 aagtaccgcggacacacatatttacagatccacaagtaccgggcatgggctcctgcgcct 134 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct: 151 aagcaccgcggacacacatatttacagatccacaagtaccgggcatggactcctgcatct 210 Query: 135 ctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctat 194 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 211 ctaaaacttcagcatggcctccaacgcgcgaagaacgtcgtcgcgggtaactatacctat 270 Query: 195 tacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagc 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 tacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagc 330 Query: 255 tgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatc 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 tgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatc 390 Query: 315 tgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgacccc 374 ||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 391 tgcaatcttcgtctttggcccatgtgaagccctcgcgcaatcgctcttcacgacgacccc 450 Query: 375 gacacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagtgtccttc 434 ||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 451 gacgcatctgcgagcgctgtcgacaaccgggaggcctgacacgagctgaaagtggccttc 510 Query: 435 aacctccaccagtgcctggtccgctgtggccatcagcacgggcgtcgacatggcctcgcg 494 |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 511 aacctccaccagcgcctgctccgctgtgaccatcagcacgggcgtcgacatggcctcgcg 570 Query: 495 caggagcgcccctnggtgctgatcgccggcgtgggaagg 533 |||||||| ||| | ||||||||| | ||||||||||| Sbjct: 571 caggagcggcccccgctgctgatcggcagcgtgggaagg 609
>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 916 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 1002 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 956 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 696 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 637 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 636 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 577 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 576 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 517 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 516 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 463
>ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 833 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 1114 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 1055 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 1054 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 995 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 994 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 935 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 934 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 881
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 683 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 624 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 623 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 564 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 563 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 504 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 503 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 450
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 210 bits (106), Expect = 3e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 695 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 636 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 253 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 635 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 576 Query: 254 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 313 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 575 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 516 Query: 314 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 515 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 462
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 196 bits (99), Expect = 5e-47 Identities = 202/235 (85%), Gaps = 1/235 (0%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 193 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 949 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 890 Query: 194 ttacttgattgtcctggtttactatcggtaatctgtggatc-ttcttcttgagcatcaga 252 | ||||| ||||||| ||||| || ||||||||||||||| |||||||| ||||||||| Sbjct: 889 tcacttgtctgtcctgatttacaattggtaatctgtggatccttcttctttagcatcaga 830 Query: 253 gctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcaca 312 ||||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| Sbjct: 829 gctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcact 770 Query: 313 tctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 367 ||||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 769 tctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 715
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 196 bits (99), Expect = 5e-47 Identities = 301/370 (81%) Strand = Plus / Minus Query: 135 ctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctat 194 ||||| ||||| |||| | |||||| |||||||||| ||| ||||||||||||||||||| Sbjct: 594 ctaaatcttcaacatgccttccaacacgcgaagaacatcagcgcgggtaactatacctat 535 Query: 195 tacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagc 254 ||| |||||||||||| | ||||||||||||||||||||||||||||| ||| | Sbjct: 534 tacnnnnncgtcctggtttacaactggtaatctgtggatcttcttcttgagcatgagaac 475 Query: 255 tgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatc 314 || ||||| |||| ||||| || | ||||| ||||| ||||||||||||||||| || Sbjct: 474 agcagcatccatcacggttttgtcagacgatagtgtgatagctggagatgtcatcacttc 415 Query: 315 tgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgacccc 374 | ||||||||| | |||||||| || || || || || ||| ||||||||| ||||| Sbjct: 414 cgatatcttcgtcttggacccatgagaggctcttgcccggtcgttcttgacgatcacccc 355 Query: 375 gacacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagtgtccttc 434 ||| |||| | || |||||||||| ||||| || || |||||| || |||||| | || Sbjct: 354 gacgcatctgaggccgctgtcgacgaccggaagccccgacacggcctcgaagtggcactc 295 Query: 435 aacctccaccagtgcctggtccgctgtggccatcagcacgggcgtcgacatggcctcgcg 494 || ||| |||| | |||||| |||||||||| ||||||||| || ||||||| ||||| Sbjct: 294 gacgtcctccagggtctggtctgctgtggccaccagcacgggtgtggacatggtctcgct 235 Query: 495 caggagcgcc 504 |||||||||| Sbjct: 234 caggagcgcc 225
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 189 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 248 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 35111790 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 35111731 Query: 249 cagagctgcggcatc 263 ||||||||| ||||| Sbjct: 35111730 cagagctgccgcatc 35111716 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 192 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 35111977 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 35111919 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 268 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 327 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 35111621 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 35111562 Query: 328 cttgac 333 ||||| Sbjct: 35111561 tttgac 35111556
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 189 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 248 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 7146 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 7087 Query: 249 cagagctgcggcatc 263 ||||||||| ||||| Sbjct: 7086 cagagctgccgcatc 7072 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 192 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 7333 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 7275 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 268 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 327 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 6977 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 6918 Query: 328 cttgac 333 ||||| Sbjct: 6917 tttgac 6912
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 189 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 248 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 84953 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 84894 Query: 249 cagagctgcggcatc 263 ||||||||| ||||| Sbjct: 84893 cagagctgccgcatc 84879 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 192 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 85140 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 85082 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 268 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 327 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 84784 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 84725 Query: 328 cttgac 333 ||||| Sbjct: 84724 tttgac 84719
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 189 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 248 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 2400 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 2459 Query: 249 cagagctgcggcatc 263 ||||||||| ||||| Sbjct: 2460 cagagctgccgcatc 2474 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 134 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 192 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 2213 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 2271 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 268 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 327 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 2569 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 2628 Query: 328 cttgac 333 ||||| Sbjct: 2629 tttgac 2634
>gb|AC130222.4| Mus musculus BAC clone RP23-18K19 from chromosome 12, complete sequence Length = 218608 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 427 tgtccttcaacctccaccagtgc 449 ||||||||||||||||||||||| Sbjct: 45611 tgtccttcaacctccaccagtgc 45589
>gb|AC122227.4| Mus musculus BAC clone RP23-131H10 from chromosome 12, complete sequence Length = 208332 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 427 tgtccttcaacctccaccagtgc 449 ||||||||||||||||||||||| Sbjct: 193011 tgtccttcaacctccaccagtgc 192989
>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence Length = 168278 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 37 aaacacttttacatctatagga 58 |||||||||||||||||||||| Sbjct: 101167 aaacacttttacatctatagga 101188
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 catcggcgggcgctgtcgac 398 |||||||||||||||||||| Sbjct: 1917126 catcggcgggcgctgtcgac 1917145
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ccaccagtgcctggtccgct 459 |||||||||||||||||||| Sbjct: 3853662 ccaccagtgcctggtccgct 3853643
>ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4760) partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 tctgtggatcttcttcttga 244 |||||||||||||||||||| Sbjct: 1378 tctgtggatcttcttcttga 1397
>gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, complete sequence Length = 178530 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcttcttgagcatcagagct 255 |||||||||||||||||||| Sbjct: 171536 tcttcttgagcatcagagct 171517
>ref|XM_815829.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053504153.290) partial mRNA Length = 1866 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 catggcctcgcgcaggagcg 502 |||||||||||||||||||| Sbjct: 1590 catggcctcgcgcaggagcg 1571
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 468 cagcacgggcgtcgacatggcctcgcgc 495 |||||| |||| |||||||||||||||| Sbjct: 2872530 cagcactggcgacgacatggcctcgcgc 2872557
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 catcggcgggcgctgtcgac 398 |||||||||||||||||||| Sbjct: 75837 catcggcgggcgctgtcgac 75856
>gb|AC073576.23| Homo sapiens 12 BAC RP11-363M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180309 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 gaagtgtccttcaacctcca 442 |||||||||||||||||||| Sbjct: 146928 gaagtgtccttcaacctcca 146909
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 catcggcgggcgctgtcgac 398 |||||||||||||||||||| Sbjct: 2567233 catcggcgggcgctgtcgac 2567252
>gb|AF131950.1| Human papillomavirus candHPV85, complete genome Length = 7812 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tttgcgatacaggctacaaa 39 |||||||||||||||||||| Sbjct: 3734 tttgcgatacaggctacaaa 3753
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gtgctgatcgccggcgtggg 529 |||||||||||||||||||| Sbjct: 3041412 gtgctgatcgccggcgtggg 3041393
>gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome Length = 10700 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 150 ggcctccaacgcgcgaagaacgtcatcg 177 ||||| ||| |||||||||||||||||| Sbjct: 2227 ggcctgcaaggcgcgaagaacgtcatcg 2200
>emb|AL355916.2|CNS05TD1 Human chromosome 14 DNA sequence BAC R-47I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178484 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 gaagtgtccttcaacctcca 442 |||||||||||||||||||| Sbjct: 135650 gaagtgtccttcaacctcca 135631
>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete sequence Length = 130977 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 acatatttacagatccacaa 109 |||||||||||||||||||| Sbjct: 119986 acatatttacagatccacaa 119967
>dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736I10, complete sequence Length = 176944 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 acatatttacagatccacaa 109 |||||||||||||||||||| Sbjct: 30122 acatatttacagatccacaa 30103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,812,494 Number of Sequences: 3902068 Number of extensions: 3812494 Number of successful extensions: 61674 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61339 Number of HSP's gapped (non-prelim): 330 length of query: 533 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 510 effective length of database: 17,143,297,704 effective search space: 8743081829040 effective search space used: 8743081829040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)