ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23e20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185701.1| Oryza sativa (japonica cultivar-group), Ozsa805... 48 0.032
2ref|NM_185691.1| Oryza sativa (japonica cultivar-group), Ozsa804... 48 0.032
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
4dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
5dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
6gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromoso... 44 0.50
7ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa804... 42 2.0
8ref|XM_476310.1| Oryza sativa (japonica cultivar-group), predic... 42 2.0
9gb|AC133123.3| Homo sapiens 3 BAC RP11-441E2 (Roswell Park Cance... 42 2.0
10gb|AC140112.3| Homo sapiens BAC clone RP11-1278I4 from UL, compl... 42 2.0
11emb|AL359181.28| Human DNA sequence from clone RP11-392N11 on ch... 42 2.0
12gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, comp... 42 2.0
13gb|AC008813.6| Homo sapiens chromosome 19 clone CTD-2102P23, com... 42 2.0
14gb|AC148939.8| Pan troglodytes BAC clone CH251-51M11 from chromo... 42 2.0
15dbj|AK131448.1| Homo sapiens cDNA FLJ16592 fis, clone TESTI4001984 42 2.0
16gb|AC114954.2| Homo sapiens chromosome 5 clone RP11-103A10, comp... 42 2.0
17gb|AC046144.15| Homo sapiens 3 BAC RP11-628J14 (Roswell Park Can... 42 2.0
18emb|BX511000.12| Zebrafish DNA sequence from clone DKEY-217F4 in... 42 2.0
19gb|AC150749.3| Pan troglodytes BAC clone CH251-553P23 from chrom... 42 2.0
20emb|BX546492.4| Human DNA sequence from clone RP11-441E2 on chro... 42 2.0
21dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.0
22gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome... 40 7.9
23gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, co... 40 7.9
24gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 7.9
25gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, com... 40 7.9
26gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.9
27emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on ch... 40 7.9
28gb|AF203743.1| Eonycteris spelaea 16S ribosomal RNA gene, comple... 40 7.9
29emb|AL929495.21| Zebrafish DNA sequence from clone CH211-136M16 ... 40 7.9
30gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer... 40 7.9
31gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Canc... 40 7.9
32gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, co... 40 7.9
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
34gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, comp... 40 7.9
35dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
36dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
37dbj|AK111474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
38emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, l... 40 7.9
39emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chro... 40 7.9 
>ref|NM_185701.1| Oryza sativa (japonica cultivar-group), Ozsa8052 predicted mRNA
          Length = 1050

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 400 aaccctatgcaccaagcttttgaaaaacccattgctcaaaatctccat 447
           ||||||||||||| |||| || |||| |||||||||||  ||||||||
Sbjct: 849 aaccctatgcaccgagctcttaaaaatcccattgctcattatctccat 802
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>ref|NM_185691.1| Oryza sativa (japonica cultivar-group), Ozsa8042 predicted mRNA
          Length = 1050

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 400 aaccctatgcaccaagcttttgaaaaacccattgctcaaaatctccat 447
           ||||||||||||| |||| || |||| |||||||||||  ||||||||
Sbjct: 849 aaccctatgcaccgagctcttaaaaatcccattgctcattatctccat 802
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 400     aaccctatgcaccaagcttttgaaaaacccattgctca 437
               ||||||||||||| |||| || |||| |||||||||||
Sbjct: 3902973 aaccctatgcaccgagctcttaaaaatcccattgctca 3902936



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 400     aaccctatgcaccaagcttttgaaaaacccattgctca 437
               ||||||||||||| |||| || |||| |||||||||||
Sbjct: 3891150 aaccctatgcaccgagctcttaaaaatcccattgctca 3891113



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 400     aaccctatgcaccaagcttttgaaaaacccattgctca 437
               ||||||||||||| |||| || |||| |||||||||||
Sbjct: 3853094 aaccctatgcaccgagctcttaaaaatcccattgctca 3853057
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0035I03
          Length = 153749

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 400  aaccctatgcaccaagcttttgaaaaacccattgctca 437
            ||||||||||||| |||| || |||| |||||||||||
Sbjct: 8849 aaccctatgcaccgagctcttaaaaatcccattgctca 8812
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 400    aaccctatgcaccaagcttttgaaaaacccattgctca 437
              ||||||||||||| |||| || |||| |||||||||||
Sbjct: 149104 aaccctatgcaccgagctcttaaaaatcccattgctca 149067



 Score = 44.1 bits (22), Expect = 0.50
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 400    aaccctatgcaccaagcttttgaaaaacccattgctca 437
              ||||||||||||| |||| || |||| |||||||||||
Sbjct: 111048 aaccctatgcaccgagctcttaaaaatcccattgctca 111011
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>gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromosome unknown, complete
             sequence
          Length = 194387

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 428   ccattgctcaaaatctccatta 449
             ||||||||||||||||||||||
Sbjct: 42770 ccattgctcaaaatctccatta 42749
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>ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa8044 predicted mRNA
          Length = 1059

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 384 tctccgcgttggtgacaaccctatgcaccaagcttttgaaaaacccattgctcaaaatct 443
           |||| ||||| || || ||||||||||||  ||| || || |||||||||||||  ||||
Sbjct: 865 tctcggcgttcgtcaccaccctatgcaccgggctctttaacaacccattgctcattatct 806

                
Query: 444 ccatt 448
           |||||
Sbjct: 805 ccatt 801
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>ref|XM_476310.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 384 tctccgcgttggtgacaaccctatgcaccaagcttttgaaaaacccattgctcaaaatct 443
           |||| ||||| || || ||||||||||||  ||| || || |||||||||||||  ||||
Sbjct: 748 tctcggcgttcgtcaccaccctatgcaccgggctctttaacaacccattgctcattatct 689

                
Query: 444 ccatt 448
           |||||
Sbjct: 688 ccatt 684
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>gb|AC133123.3| Homo sapiens 3 BAC RP11-441E2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114080

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 91    acaaaaatctgggaaataggtaaaa 115
             |||||||| ||||||||||||||||
Sbjct: 59281 acaaaaatttgggaaataggtaaaa 59305
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>gb|AC140112.3| Homo sapiens BAC clone RP11-1278I4 from UL, complete sequence
          Length = 216658

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 91    acaaaaatctgggaaataggtaaaa 115
             |||||||| ||||||||||||||||
Sbjct: 33363 acaaaaatttgggaaataggtaaaa 33339
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>emb|AL359181.28| Human DNA sequence from clone RP11-392N11 on chromosome 9 Contains the 3'
              end of the PHF2 gene for PHD finger protein 2 (GRC5,
              KIAA0662), complete sequence
          Length = 165415

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 91     acaaaaatctgggaaataggtaaaa 115
              |||||||| ||||||||||||||||
Sbjct: 137509 acaaaaatttgggaaataggtaaaa 137485
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>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence
          Length = 191144

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 91    acaaaaatctgggaaataggtaaaa 115
             |||||||| ||||||||||||||||
Sbjct: 28926 acaaaaatttgggaaataggtaaaa 28950
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>gb|AC008813.6| Homo sapiens chromosome 19 clone CTD-2102P23, complete sequence
          Length = 162914

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 91     acaaaaatctgggaaataggtaaaa 115
              |||||||| ||||||||||||||||
Sbjct: 110749 acaaaaatttgggaaataggtaaaa 110773
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>gb|AC148939.8| Pan troglodytes BAC clone CH251-51M11 from chromosome 7, complete
             sequence
          Length = 183313

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 91    acaaaaatctgggaaataggtaaaa 115
             |||||||| ||||||||||||||||
Sbjct: 70525 acaaaaatttgggaaataggtaaaa 70549
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>dbj|AK131448.1| Homo sapiens cDNA FLJ16592 fis, clone TESTI4001984
          Length = 3944

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 91   acaaaaatctgggaaataggtaaaa 115
            |||||||| ||||||||||||||||
Sbjct: 2648 acaaaaatttgggaaataggtaaaa 2672
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>gb|AC114954.2| Homo sapiens chromosome 5 clone RP11-103A10, complete sequence
          Length = 157980

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 91     acaaaaatctgggaaataggtaaaa 115
              |||||||| ||||||||||||||||
Sbjct: 105144 acaaaaatttgggaaataggtaaaa 105120
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>gb|AC046144.15| Homo sapiens 3 BAC RP11-628J14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188840

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 100    tgggaaataggtaaaaacata 120
              |||||||||||||||||||||
Sbjct: 143378 tgggaaataggtaaaaacata 143358
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>emb|BX511000.12| Zebrafish DNA sequence from clone DKEY-217F4 in linkage group 2, complete
              sequence
          Length = 191671

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 27     gttttataatagggtttaatg 47
              |||||||||||||||||||||
Sbjct: 164635 gttttataatagggtttaatg 164615
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>gb|AC150749.3| Pan troglodytes BAC clone CH251-553P23 from chromosome 7, complete
              sequence
          Length = 237211

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 91     acaaaaatctgggaaataggtaaaa 115
              |||||||| ||||||||||||||||
Sbjct: 105323 acaaaaatttgggaaataggtaaaa 105299
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>emb|BX546492.4| Human DNA sequence from clone RP11-441E2 on chromosome 22, complete
             sequence
          Length = 165333

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 91    acaaaaatctgggaaataggtaaaa 115
             |||||||| ||||||||||||||||
Sbjct: 59282 acaaaaatttgggaaataggtaaaa 59306
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>dbj|AB016870.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15I22
          Length = 59648

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 84   tacacacacaaaaatctggga 104
            |||||||||||||||||||||
Sbjct: 6042 tacacacacaaaaatctggga 6022
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>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence
          Length = 205289

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    acattttacatgaggagtac 86
             ||||||||||||||||||||
Sbjct: 86957 acattttacatgaggagtac 86976
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>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence
          Length = 210819

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 92    caaaaatctgggaaataggtaaaa 115
             ||||||||||||||| ||||||||
Sbjct: 28379 caaaaatctgggaaagaggtaaaa 28402
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 523    gagcccctcggcatcggcga 542
              ||||||||||||||||||||
Sbjct: 231648 gagcccctcggcatcggcga 231629
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>gb|AC113599.10| Mus musculus chromosome 18, clone RP23-5D23, complete sequence
          Length = 217989

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 92    caaaaatctgggaaataggtaaaa 115
             ||||||||||||||| ||||||||
Sbjct: 10578 caaaaatctgggaaagaggtaaaa 10555
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 527    ccctcggcatcggcgaagtt 546
              ||||||||||||||||||||
Sbjct: 520322 ccctcggcatcggcgaagtt 520341
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>emb|AL390783.12| Human DNA sequence from clone RP11-109I13 on chromosome 10 Contains part
              of the CACNB2 gene for calcium channel voltage-dependent
              beta 2 subunit and a novel gene, complete sequence
          Length = 177656

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 96     aatctgggaaataggtaaaaacataaac 123
              |||||||||||||||||  |||||||||
Sbjct: 108527 aatctgggaaataggtattaacataaac 108500
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>gb|AF203743.1| Eonycteris spelaea 16S ribosomal RNA gene, complete sequence;
           mitochondrial gene for mitochondrial product
          Length = 1572

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 catgtagtcgttgagcttga 278
           ||||||||||||||||||||
Sbjct: 554 catgtagtcgttgagcttga 535
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>emb|AL929495.21| Zebrafish DNA sequence from clone CH211-136M16 in linkage group 12,
             complete sequence
          Length = 157568

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 85    acacacacaaaaatctgggaaataggtaaaaa 116
             ||||||||||||| |||| ||||| |||||||
Sbjct: 23475 acacacacaaaaaactggaaaatacgtaaaaa 23444
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>gb|AC007953.21| Homo sapiens 3 BAC RP11-2L8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152210

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 413    aagcttttgaaaaacccattgctc 436
              ||||||||||||||| ||||||||
Sbjct: 142629 aagcttttgaaaaacacattgctc 142652
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>gb|AC103549.6| Homo sapiens 3 BAC RP11-795G18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165139

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 413   aagcttttgaaaaacccattgctc 436
             ||||||||||||||| ||||||||
Sbjct: 71998 aagcttttgaaaaacacattgctc 71975
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>gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, complete sequence
          Length = 206693

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    gaggagtacacacacaaaaa 97
             ||||||||||||||||||||
Sbjct: 77623 gaggagtacacacacaaaaa 77642
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 398      acaaccctatgcaccaagcttttgaaaaacccattgctca 437
                |||||||||||||||  |||| |||| | |||||||||||
Sbjct: 12789500 acaaccctatgcaccgggcttctgaacatcccattgctca 12789461
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>gb|AC099790.3| Homo sapiens chromosome 1 clone RP11-397G23, complete sequence
          Length = 213942

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 73     tacatgaggagtacacacacaaaa 96
              ||||||| ||||||||||||||||
Sbjct: 175815 tacatgaagagtacacacacaaaa 175792
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>dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0086N11
          Length = 146185

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 398    acaaccctatgcaccaagcttttgaaaaacccattgctca 437
              |||||||||||||||  |||| |||| | |||||||||||
Sbjct: 137777 acaaccctatgcaccgggcttctgaacatcccattgctca 137738
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>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0073A18
          Length = 176755

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 398  acaaccctatgcaccaagcttttgaaaaacccattgctca 437
            |||||||||||||||  |||| |||| | |||||||||||
Sbjct: 8982 acaaccctatgcaccgggcttctgaacatcccattgctca 8943
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>dbj|AK111474.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-F04, full
           insert sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 398 acaaccctatgcaccaagcttttgaaaaacccattgctca 437
           |||||||||||||||  |||| |||| | |||||||||||
Sbjct: 914 acaaccctatgcaccgggcttctgaacatcccattgctca 875
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>emb|Y11658.1|ECVHL88 Equus caballus DNA for CA microsatellite, locus ECVHL88
          Length = 595

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  tacatgaggagtacacacac 92
           ||||||||||||||||||||
Sbjct: 317 tacatgaggagtacacacac 298
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>emb|AL713979.6| Mouse DNA sequence from clone RP23-434O7 on chromosome X, complete
              sequence
          Length = 148507

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    agtgtcatggtatttttcca 260
              ||||||||||||||||||||
Sbjct: 139391 agtgtcatggtatttttcca 139410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,202,955
Number of Sequences: 3902068
Number of extensions: 5202955
Number of successful extensions: 96655
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96494
Number of HSP's gapped (non-prelim): 161
length of query: 578
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 555
effective length of database: 17,143,297,704
effective search space: 9514530225720
effective search space used: 9514530225720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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