Clone Information

BLAST Search Result

Clone Name	rbasd23e18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_193168.1\| Oryza sativa (japonica cultivar-group), predic...	357	3e-95
2	dbj\|AK068824.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	357	3e-95
3	dbj\|AK059305.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	357	3e-95
4	gb\|AY106077.1\| Zea mays PCO149989 mRNA sequence	238	2e-59
5	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	153	8e-34
6	dbj\|AP003370.3\| Oryza sativa (japonica cultivar-group) genomic D...	153	8e-34
7	gb\|AY911854.1\| Nicotiana tabacum cinnamyl alcohol dehydrogenase ...	64	6e-07
8	gb\|AY362455.1\| Quercus suber NADPH-dependent cinnamyl alcohol de...	50	0.009
9	emb\|AM160602.1\| Quercus ilex mRNA for cinnamyl alcohol dehydroge...	50	0.009
10	emb\|AM160601.1\| Quercus suber mRNA for cinnamyl alcohol dehydrog...	50	0.009
11	gb\|AF033851.1\| Vigna radiata aldehyde reductase mRNA, complete cds	48	0.034
12	gb\|AY911855.1\| Nicotiana tabacum cinnamyl alcohol dehydrogenase ...	48	0.034
13	gb\|AY879287.1\| Ocimum basilicum alcohol dehydrogenase-like prote...	46	0.13
14	dbj\|BA000021.3\| Wigglesworthia glossinidia endosymbiont of Gloss...	46	0.13
15	gb\|AC005296.2\| Homo sapiens X BAC GS1-214D18 (Genome Systems Hum...	44	0.53
16	ref\|XM_651789.1\| Entamoeba histolytica HM-1:IMSS Beige/BEACH dom...	44	0.53
17	gb\|AF053084.1\|AF053084 Malus domestica putative cinnamyl alcohol...	44	0.53
18	gb\|U69694.1\|BOU69694 Brassica oleracea ATP-sulfurylase precursor...	44	0.53
19	emb\|AM159095.1\| Plantago major mRNA for cinnamoyl alcohol dehydr...	44	0.53
20	emb\|AL928724.10\| Zebrafish DNA sequence from clone CH211-51K14 i...	42	2.1
21	gb\|AC068647.10\| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Canc...	42	2.1
22	gb\|AC116026.1\| Homo sapiens 3 BAC RP11-3F11 (Roswell Park Cancer...	42	2.1
23	gb\|AE010287.1\| Pyrococcus furiosus DSM 3638, section 162 of 173 ...	42	2.1
24	emb\|BX279524.5\| Zebrafish DNA sequence from clone DKEY-35H11 in ...	42	2.1
25	emb\|BX255969.8\| Zebrafish DNA sequence from clone DKEY-67M7 in l...	42	2.1
26	emb\|BX005374.5\| Zebrafish DNA sequence from clone DKEY-29H23 in ...	42	2.1
27	gb\|AC101854.8\| Mus musculus chromosome 1, clone RP23-298H18, com...	40	8.2
28	gb\|AC091478.6\| Mus musculus chromosome 3, clone RP23-469J3, comp...	40	8.2
29	gb\|AE017263.1\| Mesoplasma florum L1 complete genome	40	8.2
30	gb\|AC166544.2\| Nectria haematococca clone JGIAYWI-5K5, complete ...	40	8.2
31	gb\|AC133161.4\| Mus musculus BAC clone RP24-534C7 from chromosome...	40	8.2
32	gb\|AC122899.2\| Mus musculus BAC clone RP23-74L7 from 3, complete...	40	8.2
33	gb\|AC113312.7\| Mus musculus chromosome 7, clone RP23-440K7, comp...	40	8.2
34	gb\|AC165163.2\| Mus musculus BAC clone RP23-146B12 from chromosom...	40	8.2
35	gb\|DQ142643.1\| Eucommia ulmoides cinnamyl alcohol dehydrogenase ...	40	8.2
36	emb\|BX571876.1\|BACPHGLE1 Leptospira biflexa temperate bacterioph...	40	8.2
37	gb\|AC158345.8\| Mus musculus chromosome 7, clone RP23-271M19, com...	40	8.2
38	gb\|DQ400495.1\| Aldrichina grahami clone SCUBP06024 cytochrome b ...	40	8.2
39	gb\|DQ400490.1\| Aldrichina grahami clone SCUBP06019 cytochrome b ...	40	8.2
40	gb\|DQ400488.1\| Lucilia sericata clone SCUBP06017 cytochrome b (c...	40	8.2
41	gb\|AF269398.1\|AF269398 Staphylococcus epidermidis strain SR1 clo...	40	8.2
42	emb\|BX927364.4\| Zebrafish DNA sequence from clone CH211-20H7 in ...	40	8.2
43	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
44	gb\|AY879238.1\| Sarcophaga crassipalpis cytochrome b (cytb) gene,...	40	8.2
45	gb\|AF269834.1\|AF269834 Staphylococcus epidermidis strain SR1 clo...	40	8.2
46	dbj\|AP005305.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
47	dbj\|AP005487.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
48	gb\|AC154594.2\| Mus musculus BAC clone RP23-350L7 from chromosome...	40	8.2
49	gb\|AE015929.1\| Staphylococcus epidermidis ATCC 12228, complete g...	40	8.2
50	emb\|Z81052.1\|CED2023 Caenorhabditis elegans Cosmid D2023, comple...	40	8.2

>ref|NM_193168.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1359

 Score =  357 bits (180), Expect = 3e-95
 Identities = 408/484 (84%)
 Strand = Plus / Minus

                                                                        
Query: 122  aaatcctttctctttcaaactctcgatagtctccttgaggctcgtctccaggggaatcag 181
            |||||||||||||||||| |||||||| |||||||||| |||||| | ||||||| ||||
Sbjct: 1332 aaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgcaggggagtcag 1273

                                                                        
Query: 182  ctccatgcccagacttcttatcttgtcctttgacacttggtagattgtggcaaaaggagc 241
             |||| |||||  ||| ||||||| |||||||| || ||||||||||   |  | ||   
Sbjct: 1272 ttccaggcccaagctttttatcttttcctttgatacctggtagattggcactgatggctt 1213

                                                                        
Query: 242  gtcatctgcacacttgtctggcactggaaattcaggatacatctcgtgtatgatcttgac 301
            |||||||||||||||||||||||  ||||  |  |||||||||||  | ||||| | |||
Sbjct: 1212 gtcatctgcacacttgtctggcagaggaatattgggatacatctcacgaatgatttggac 1153

                                                                        
Query: 302  aaggtccgagtggtgaatgactctttcaaccatgcaatatcttccgtttgctgaaggatc 361
             || || |||| |||    |||||||||||||||||||||||||| |||||||||||| |
Sbjct: 1152 gagctctgagtagtgcgcaactctttcaaccatgcaatatcttccatttgctgaaggaac 1093

                                                                        
Query: 362  ttcatatgctaggatatgtgccagggcaacatctttaacgtttacccatccaaagcagaa 421
            ||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||| |||
Sbjct: 1092 ttcatatgcaaggatatgtgccagggcaacatccttaacgtttatccagccaaagctgaa 1033

                                                                        
Query: 422  attggcgtatgtagaagatgatccatttataaacttcaatattgcttctgcactagtatt 481
            ||| |  ||||| || ||||||||||| || | |||||  |||||||| |||||||||||
Sbjct: 1032 attaggatatgtcgaggatgatccattgattagcttcagaattgcttcagcactagtatt 973

                                                                        
Query: 482  cagtgtaggctgcaacaggggaccaatgaccattgttggatttattgtaattatttctaa 541
            ||||| |||||||| |||||||||||||||||||| ||| || |  |||| |||||| ||
Sbjct: 972  cagtgaaggctgcagcaggggaccaatgaccattgctgggttcaccgtaactatttcaaa 913

                                                                        
Query: 542  tccattatcttttgcgaacttccatgcagcctcctcggcaagggtcttggatagcacata 601
            ||||||||||||||  |||||||| ||||||||||| || ||||||||||| || |||||
Sbjct: 912  tccattatcttttgaaaacttccaagcagcctcctctgctagggtcttggacagaacata 853

                
Query: 602  ccat 605
            ||||
Sbjct: 852  ccat 849

to top

>dbj|AK068824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162A03, full
            insert sequence
          Length = 1334

 Score =  357 bits (180), Expect = 3e-95
 Identities = 408/484 (84%)
 Strand = Plus / Minus

                                                                        
Query: 122  aaatcctttctctttcaaactctcgatagtctccttgaggctcgtctccaggggaatcag 181
            |||||||||||||||||| |||||||| |||||||||| |||||| | ||||||| ||||
Sbjct: 1145 aaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgcaggggagtcag 1086

                                                                        
Query: 182  ctccatgcccagacttcttatcttgtcctttgacacttggtagattgtggcaaaaggagc 241
             |||| |||||  ||| ||||||| |||||||| || ||||||||||   |  | ||   
Sbjct: 1085 ttccaggcccaagctttttatcttttcctttgatacctggtagattggcactgatggctt 1026

                                                                        
Query: 242  gtcatctgcacacttgtctggcactggaaattcaggatacatctcgtgtatgatcttgac 301
            |||||||||||||||||||||||  ||||  |  |||||||||||  | ||||| | |||
Sbjct: 1025 gtcatctgcacacttgtctggcagaggaatattgggatacatctcacgaatgatttggac 966

                                                                        
Query: 302  aaggtccgagtggtgaatgactctttcaaccatgcaatatcttccgtttgctgaaggatc 361
             || || |||| |||    |||||||||||||||||||||||||| |||||||||||| |
Sbjct: 965  gagctctgagtagtgcgcaactctttcaaccatgcaatatcttccatttgctgaaggaac 906

                                                                        
Query: 362  ttcatatgctaggatatgtgccagggcaacatctttaacgtttacccatccaaagcagaa 421
            ||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||| |||
Sbjct: 905  ttcatatgcaaggatatgtgccagggcaacatccttaacgtttatccagccaaagctgaa 846

                                                                        
Query: 422  attggcgtatgtagaagatgatccatttataaacttcaatattgcttctgcactagtatt 481
            ||| |  ||||| || ||||||||||| || | |||||  |||||||| |||||||||||
Sbjct: 845  attaggatatgtcgaggatgatccattgattagcttcagaattgcttcagcactagtatt 786

                                                                        
Query: 482  cagtgtaggctgcaacaggggaccaatgaccattgttggatttattgtaattatttctaa 541
            ||||| |||||||| |||||||||||||||||||| ||| || |  |||| |||||| ||
Sbjct: 785  cagtgaaggctgcagcaggggaccaatgaccattgctgggttcaccgtaactatttcaaa 726

                                                                        
Query: 542  tccattatcttttgcgaacttccatgcagcctcctcggcaagggtcttggatagcacata 601
            ||||||||||||||  |||||||| ||||||||||| || ||||||||||| || |||||
Sbjct: 725  tccattatcttttgaaaacttccaagcagcctcctctgctagggtcttggacagaacata 666

                
Query: 602  ccat 605
            ||||
Sbjct: 665  ccat 662

to top

>dbj|AK059305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-F12, full
            insert sequence
          Length = 1322

 Score =  357 bits (180), Expect = 3e-95
 Identities = 408/484 (84%)
 Strand = Plus / Minus

                                                                        
Query: 122  aaatcctttctctttcaaactctcgatagtctccttgaggctcgtctccaggggaatcag 181
            |||||||||||||||||| |||||||| |||||||||| |||||| | ||||||| ||||
Sbjct: 1157 aaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgcaggggagtcag 1098

                                                                        
Query: 182  ctccatgcccagacttcttatcttgtcctttgacacttggtagattgtggcaaaaggagc 241
             |||| |||||  ||| ||||||| |||||||| || ||||||||||   |  | ||   
Sbjct: 1097 ttccaggcccaagctttttatcttttcctttgatacctggtagattggcactgatggctt 1038

                                                                        
Query: 242  gtcatctgcacacttgtctggcactggaaattcaggatacatctcgtgtatgatcttgac 301
            |||||||||||||||||||||||  ||||  |  |||||||||||  | ||||| | |||
Sbjct: 1037 gtcatctgcacacttgtctggcagaggaatattgggatacatctcacgaatgatttggac 978

                                                                        
Query: 302  aaggtccgagtggtgaatgactctttcaaccatgcaatatcttccgtttgctgaaggatc 361
             || || |||| |||    |||||||||||||||||||||||||| |||||||||||| |
Sbjct: 977  gagctctgagtagtgcgcaactctttcaaccatgcaatatcttccatttgctgaaggaac 918

                                                                        
Query: 362  ttcatatgctaggatatgtgccagggcaacatctttaacgtttacccatccaaagcagaa 421
            ||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||| |||
Sbjct: 917  ttcatatgcaaggatatgtgccagggcaacatccttaacgtttatccagccaaagctgaa 858

                                                                        
Query: 422  attggcgtatgtagaagatgatccatttataaacttcaatattgcttctgcactagtatt 481
            ||| |  ||||| || ||||||||||| || | |||||  |||||||| |||||||||||
Sbjct: 857  attaggatatgtcgaggatgatccattgattagcttcagaattgcttcagcactagtatt 798

                                                                        
Query: 482  cagtgtaggctgcaacaggggaccaatgaccattgttggatttattgtaattatttctaa 541
            ||||| |||||||| |||||||||||||||||||| ||| || |  |||| |||||| ||
Sbjct: 797  cagtgaaggctgcagcaggggaccaatgaccattgctgggttcaccgtaactatttcaaa 738

                                                                        
Query: 542  tccattatcttttgcgaacttccatgcagcctcctcggcaagggtcttggatagcacata 601
            ||||||||||||||  |||||||| ||||||||||| || ||||||||||| || |||||
Sbjct: 737  tccattatcttttgaaaacttccaagcagcctcctctgctagggtcttggacagaacata 678

                
Query: 602  ccat 605
            ||||
Sbjct: 677  ccat 674

to top

>gb|AY106077.1| Zea mays PCO149989 mRNA sequence
          Length = 1282

 Score =  238 bits (120), Expect = 2e-59
 Identities = 378/464 (81%)
 Strand = Plus / Minus

                                                                        
Query: 129  ttctctttcaaactctcgatagtctccttgaggctcgtctccaggggaatcagctccatg 188
            ||||||||||| || ||||| |||||||||| |||||||||||| ||||||| ||| |||
Sbjct: 1087 ttctctttcaagctttcgatggtctccttgacgctcgtctccagtggaatcaactcgatg 1028

                                                                        
Query: 189  cccagacttcttatcttgtcctttgacacttggtagattgtggcaaaaggagcgtcatct 248
            || |  ||| ||||||| |||||||| |||||||||  || | |||| ||   |||||||
Sbjct: 1027 cctatgctttttatcttctcctttgatacttggtagggtgggacaaacggcttgtcatct 968

                                                                        
Query: 249  gcacacttgtctggcactggaaattcaggatacatctcgtgtatgatcttgacaaggtcc 308
            ||||||||||| || |  ||||    ||||||||| | | | || || || || || || 
Sbjct: 967  gcacacttgtccggaagaggaagggtaggatacatgttgcggataatgttcaccagttct 908

                                                                        
Query: 309  gagtggtgaatgactctttcaaccatgcaatatcttccgtttgctgaaggatcttcatat 368
            |||| |||||  |||||||| |||||||| || ||||| |||| ||| ||| | || |||
Sbjct: 907  gagtagtgaacaactctttccaccatgcagtaccttccatttgatgagggaacctcgtat 848

                                                                        
Query: 369  gctaggatatgtgccagggcaacatctttaacgtttacccatccaaagcagaaattggcg 428
            || |||||||| |||||||||||||| || || || |||||||||||||| |||||||  
Sbjct: 847  gcaaggatatgggccagggcaacatccttgacattaacccatccaaagcaaaaattggga 788

                                                                        
Query: 429  tatgtagaagatgatccatttataaacttcaatattgcttctgcactagtattcagtgta 488
            |||||||| ||||| ||||| || |||||||  |||||||| ||||| ||||| ||||||
Sbjct: 787  tatgtagacgatgacccattgattaacttcaggattgcttcagcactggtatttagtgta 728

                                                                        
Query: 489  ggctgcaacaggggaccaatgaccattgttggatttattgtaattatttctaatccatta 548
            ||||||| |||||||||||| ||||| | ||| ||||| ||||  ||||| | |||||||
Sbjct: 727  ggctgcagcaggggaccaataaccatcgctgggtttatagtaacgatttcaagtccatta 668

                                                        
Query: 549  tcttttgcgaacttccatgcagcctcctcggcaagggtcttgga 592
            ||  ||| ||||||||| ||||||||||| || || ||||||||
Sbjct: 667  tcccttgagaacttccaagcagcctcctctgccagcgtcttgga 624

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  153 bits (77), Expect = 8e-34
 Identities = 113/125 (90%)
 Strand = Plus / Minus

                                                                            
Query: 321      actctttcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgt 380
                |||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct: 19009649 actctttcaaccatgcaatatcttccatttgctgaaggaacttcatatgcaaggatatgt 19009590

                                                                            
Query: 381      gccagggcaacatctttaacgtttacccatccaaagcagaaattggcgtatgtagaagat 440
                |||||||||||||| |||||||||| ||| ||||||| |||||| |  ||||| || |||
Sbjct: 19009589 gccagggcaacatccttaacgtttatccagccaaagctgaaattaggatatgtcgaggat 19009530

                     
Query: 441      gatcc 445
                |||||
Sbjct: 19009529 gatcc 19009525



 Score =  151 bits (76), Expect = 3e-33
 Identities = 127/144 (88%)
 Strand = Plus / Minus

                                                                            
Query: 462      attgcttctgcactagtattcagtgtaggctgcaacaggggaccaatgaccattgttgga 521
                |||||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||| 
Sbjct: 19008748 attgcttcagcactagtattcagtgaaggctgcagcaggggaccaatgaccattgctggg 19008689

                                                                            
Query: 522      tttattgtaattatttctaatccattatcttttgcgaacttccatgcagcctcctcggca 581
                || |  |||| |||||| ||||||||||||||||  |||||||| ||||||||||| || 
Sbjct: 19008688 ttcaccgtaactatttcaaatccattatcttttgaaaacttccaagcagcctcctctgct 19008629

                                        
Query: 582      agggtcttggatagcacataccat 605
                ||||||||||| || |||||||||
Sbjct: 19008628 agggtcttggacagaacataccat 19008605



 Score =  101 bits (51), Expect = 3e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                            
Query: 122      aaatcctttctctttcaaactctcgatagtctccttgaggctcgtctccaggggaatcag 181
                |||||||||||||||||| |||||||| |||||||||| |||||| | ||||||| ||||
Sbjct: 19010081 aaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgcaggggagtcag 19010022

                                                               
Query: 182      ctccatgcccagacttcttatcttgtcctttgacacttggtagattg 228
                 |||| |||||  ||| ||||||| |||||||| || ||||||||||
Sbjct: 19010021 ttccaggcccaagctttttatcttttcctttgatacctggtagattg 19009975

to top

>dbj|AP003370.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1129H01
          Length = 101104

 Score =  153 bits (77), Expect = 8e-34
 Identities = 113/125 (90%)
 Strand = Plus / Minus

                                                                         
Query: 321   actctttcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgt 380
             |||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct: 66692 actctttcaaccatgcaatatcttccatttgctgaaggaacttcatatgcaaggatatgt 66633

                                                                         
Query: 381   gccagggcaacatctttaacgtttacccatccaaagcagaaattggcgtatgtagaagat 440
             |||||||||||||| |||||||||| ||| ||||||| |||||| |  ||||| || |||
Sbjct: 66632 gccagggcaacatccttaacgtttatccagccaaagctgaaattaggatatgtcgaggat 66573

                  
Query: 441   gatcc 445
             |||||
Sbjct: 66572 gatcc 66568



 Score =  151 bits (76), Expect = 3e-33
 Identities = 127/144 (88%)
 Strand = Plus / Minus

                                                                         
Query: 462   attgcttctgcactagtattcagtgtaggctgcaacaggggaccaatgaccattgttgga 521
             |||||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||| 
Sbjct: 65791 attgcttcagcactagtattcagtgaaggctgcagcaggggaccaatgaccattgctggg 65732

                                                                         
Query: 522   tttattgtaattatttctaatccattatcttttgcgaacttccatgcagcctcctcggca 581
             || |  |||| |||||| ||||||||||||||||  |||||||| ||||||||||| || 
Sbjct: 65731 ttcaccgtaactatttcaaatccattatcttttgaaaacttccaagcagcctcctctgct 65672

                                     
Query: 582   agggtcttggatagcacataccat 605
             ||||||||||| || |||||||||
Sbjct: 65671 agggtcttggacagaacataccat 65648



 Score =  101 bits (51), Expect = 3e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                         
Query: 122   aaatcctttctctttcaaactctcgatagtctccttgaggctcgtctccaggggaatcag 181
             |||||||||||||||||| |||||||| |||||||||| |||||| | ||||||| ||||
Sbjct: 67124 aaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgcaggggagtcag 67065

                                                            
Query: 182   ctccatgcccagacttcttatcttgtcctttgacacttggtagattg 228
              |||| |||||  ||| ||||||| |||||||| || ||||||||||
Sbjct: 67064 ttccaggcccaagctttttatcttttcctttgatacctggtagattg 67018

to top

>gb|AY911854.1| Nicotiana tabacum cinnamyl alcohol dehydrogenase 1 (CAD1-1) mRNA,
           complete cds
          Length = 972

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                       
Query: 327 tcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagg 386
           ||||||||  ||||||| || || |||||||| | |||| ||||||| ||||| || |||
Sbjct: 752 tcaaccattaaatatctaccattagctgaagggttttcaaatgctagaatatgcgcgagg 693

                                       
Query: 387 gcaacatctttaacgtttacccatccaa 414
           ||||||||||| || || ||||||||||
Sbjct: 692 gcaacatctttcacattaacccatccaa 665

to top

>gb|AY362455.1| Quercus suber NADPH-dependent cinnamyl alcohol dehydrogenase (CAD1)
           mRNA, complete cds
          Length = 1378

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                       
Query: 327 tcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagg 386
           |||||||  |||||||||||  | |||| ||||  |||||||||| | ||||||||   |
Sbjct: 818 tcaaccaaacaatatcttccactagctgtaggaatttcatatgcttgaatatgtgcattg 759

                                        
Query: 387 gcaacatctttaacgtttacccatccaaa 415
           ||||||||||| || || |||||||||||
Sbjct: 758 gcaacatctttgacattaacccatccaaa 730

to top

>emb|AM160602.1| Quercus ilex mRNA for cinnamyl alcohol dehydrogenase (cad gene)
          Length = 1225

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                       
Query: 327 tcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagg 386
           |||||||  |||||||||||  | |||| ||||  |||||||||| | ||||||||   |
Sbjct: 790 tcaaccaaacaatatcttccactagctgtaggaatttcatatgcttgaatatgtgcattg 731

                                        
Query: 387 gcaacatctttaacgtttacccatccaaa 415
           ||||||||||| || || |||||||||||
Sbjct: 730 gcaacatctttgacattaacccatccaaa 702

to top

>emb|AM160601.1| Quercus suber mRNA for cinnamyl alcohol dehydrogenase (cad gene)
          Length = 1378

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                       
Query: 327 tcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagg 386
           |||||||  |||||||||||  | |||| ||||  |||||||||| | ||||||||   |
Sbjct: 818 tcaaccaaacaatatcttccactagctgtaggaatttcatatgcttgaatatgtgcattg 759

                                        
Query: 387 gcaacatctttaacgtttacccatccaaa 415
           ||||||||||| || || |||||||||||
Sbjct: 758 gcaacatctttgacattaacccatccaaa 730

to top

>gb|AF033851.1| Vigna radiata aldehyde reductase mRNA, complete cds
          Length = 1267

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 337 aatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagggcaacatctt 396
           |||||||||| || || |||| ||  ||||||||||| ||||| ||||  ||||||||||
Sbjct: 785 aatatcttccattagccgaagcattctcatatgctagaatatgggccaatgcaacatctt 726

                           
Query: 397 taacgtttacccatcc 412
           | ||||  ||||||||
Sbjct: 725 tcacgtcgacccatcc 710

to top

>gb|AY911855.1| Nicotiana tabacum cinnamyl alcohol dehydrogenase 1 (CAD1-7) mRNA,
           complete cds
          Length = 984

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 473 actagtattcagtgtaggctgcaacaggggaccaatgaccattgttggatttattg 528
           ||||||||| ||||||||||| ||||  |||||||| ||||| |  ||||||||||
Sbjct: 612 actagtattgagtgtaggctgtaacaaaggaccaataaccatagcaggatttattg 557

to top

>gb|AY879287.1| Ocimum basilicum alcohol dehydrogenase-like protein (ADH2) mRNA,
           complete cds
          Length = 978

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                       
Query: 444 ccatttataaacttcaatattgcttctgcactagtattcagtgtaggctgcaacagggga 503
           |||||||| || |||||||||||  | ||||| || || ||||| ||||||||||  || 
Sbjct: 647 ccatttatcaagttcaatattgcagcagcacttgtgtttagtgttggctgcaacaatggg 588

                                  
Query: 504 ccaatgaccattgttggatttat 526
           ||||| ||||||| ||| |||||
Sbjct: 587 ccaatcaccattgctgggtttat 565

to top

>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA,
              complete genome
          Length = 697724

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 533    tatttctaatccattatcttttg 555
              |||||||||||||||||||||||
Sbjct: 195508 tatttctaatccattatcttttg 195530

to top

>gb|AC005296.2| Homo sapiens X BAC GS1-214D18 (Genome Systems Human BAC Library)
             complete sequence
          Length = 191503

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 199   ttatcttgtcctttgacacttg 220
             ||||||||||||||||||||||
Sbjct: 12546 ttatcttgtcctttgacacttg 12567

to top

>ref|XM_651789.1| Entamoeba histolytica HM-1:IMSS Beige/BEACH domain protein, putative
            (7.t00041) partial mRNA
          Length = 7095

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 531  attatttctaatccattatctt 552
            ||||||||||||||||||||||
Sbjct: 5357 attatttctaatccattatctt 5336

to top

>gb|AF053084.1|AF053084 Malus domestica putative cinnamyl alcohol dehydrogenase (CAD) mRNA,
           complete cds
          Length = 1262

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 386 ggcaacatctttaacgtttacccatccaaa 415
           |||||||||||||||||| | |||||||||
Sbjct: 717 ggcaacatctttaacgttaatccatccaaa 688

to top

>gb|U69694.1|BOU69694 Brassica oleracea ATP-sulfurylase precursor (ASBo) gene, complete
           cds
          Length = 2807

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 80  aaagcaaagaaagtttcacaga 101
           ||||||||||||||||||||||
Sbjct: 133 aaagcaaagaaagtttcacaga 154

to top

>emb|AM159095.1| Plantago major mRNA for cinnamoyl alcohol dehydrogenase (cad2 gene)
          Length = 1242

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 76/94 (80%)
 Strand = Plus / Minus

                                                                       
Query: 321 actctttcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgt 380
           ||||| |||||||||  |||||||||  ||||||| |||   |||||||| |||||||||
Sbjct: 847 actctctcaaccatgacatatcttccacttgctgatggagtctcatatgccaggatatgt 788

                                             
Query: 381 gccagggcaacatctttaacgtttacccatccaa 414
            |    ||||||||||| || || ||||||||||
Sbjct: 787 ccatttgcaacatctttcacattaacccatccaa 754

to top

>emb|AL928724.10| Zebrafish DNA sequence from clone CH211-51K14 in linkage group 15,
             complete sequence
          Length = 165299

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 513   attgttggatttattgtaattattt 537
             |||||||||||||||||||| ||||
Sbjct: 25391 attgttggatttattgtaataattt 25367

to top

>gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 132745

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 525   attgtaattatttctaatccattat 549
             |||||||| ||||||||||||||||
Sbjct: 81417 attgtaataatttctaatccattat 81393

to top

>gb|AC116026.1| Homo sapiens 3 BAC RP11-3F11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 90343

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 525   attgtaattatttctaatccattat 549
             |||||||| ||||||||||||||||
Sbjct: 39015 attgtaataatttctaatccattat 38991

to top

>gb|AE010287.1| Pyrococcus furiosus DSM 3638, section 162 of 173 of the complete
            genome
          Length = 10431

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 552  tttgcgaacttccatgcagcctcct 576
            |||||||||||||||||||| ||||
Sbjct: 9340 tttgcgaacttccatgcagcatcct 9364

to top

>emb|BX279524.5| Zebrafish DNA sequence from clone DKEY-35H11 in linkage group 11,
             complete sequence
          Length = 157440

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 430   atgtagaagatgatccatttataaa 454
             ||||||||| |||||||||||||||
Sbjct: 53689 atgtagaagttgatccatttataaa 53665

to top

>emb|BX255969.8| Zebrafish DNA sequence from clone DKEY-67M7 in linkage group 11,
             complete sequence
          Length = 155717

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 430   atgtagaagatgatccatttataaa 454
             ||||||||| |||||||||||||||
Sbjct: 87957 atgtagaagttgatccatttataaa 87933

to top

>emb|BX005374.5| Zebrafish DNA sequence from clone DKEY-29H23 in linkage group 15,
             complete sequence
          Length = 204318

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 513   attgttggatttattgtaattattt 537
             |||||||||||||||||||| ||||
Sbjct: 52817 attgttggatttattgtaataattt 52793

to top

>gb|AC101854.8| Mus musculus chromosome 1, clone RP23-298H18, complete sequence
          Length = 190474

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  atcctttctctttcaaactc 143
            ||||||||||||||||||||
Sbjct: 7882 atcctttctctttcaaactc 7901

to top

>gb|AC091478.6| Mus musculus chromosome 3, clone RP23-469J3, complete sequence
          Length = 253738

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 405   acccatccaaagcagaaattggcg 428
             |||||||||||| |||||||||||
Sbjct: 46335 acccatccaaagaagaaattggcg 46358

to top

>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 540    aatccattatcttttgcgaa 559
              ||||||||||||||||||||
Sbjct: 739218 aatccattatcttttgcgaa 739237

to top

>gb|AC166544.2| Nectria haematococca clone JGIAYWI-5K5, complete sequence
          Length = 35161

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 557   gaacttccatgcagcctcctcggc 580
             |||||||||||| |||||||||||
Sbjct: 11895 gaacttccatgctgcctcctcggc 11872

to top

>gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome 1, complete sequence
          Length = 157891

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    atcctttctctttcaaactc 143
              ||||||||||||||||||||
Sbjct: 108239 atcctttctctttcaaactc 108258

to top

>gb|AC122899.2| Mus musculus BAC clone RP23-74L7 from 3, complete sequence
          Length = 214857

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 405   acccatccaaagcagaaattggcg 428
             |||||||||||| |||||||||||
Sbjct: 82973 acccatccaaagaagaaattggcg 82996

to top

>gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, complete sequence
          Length = 215675

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     aaagcaaagaaagtttcaca 99
              ||||||||||||||||||||
Sbjct: 177013 aaagcaaagaaagtttcaca 176994

to top

>gb|AC165163.2| Mus musculus BAC clone RP23-146B12 from chromosome 14, complete
             sequence
          Length = 178254

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   gactcagaagtcagaaatcctttc 131
             |||||||||||||||| |||||||
Sbjct: 52652 gactcagaagtcagaagtcctttc 52629

to top

>gb|DQ142643.1| Eucommia ulmoides cinnamyl alcohol dehydrogenase (CAD) mRNA,
           complete cds
          Length = 1243

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 561 ttccatgcagcctcctcggcaagggtcttggatagcacatacca 604
           ||||| |||||||||||||| |  ||||| || |||||||||||
Sbjct: 581 ttccaggcagcctcctcggccaatgtctttgaaagcacatacca 538

to top

>emb|BX571876.1|BACPHGLE1 Leptospira biflexa temperate bacteriophage LE1
          Length = 73623

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   ttcaaactctcgatagtctc 154
             ||||||||||||||||||||
Sbjct: 42220 ttcaaactctcgatagtctc 42201

to top

>gb|AC158345.8| Mus musculus chromosome 7, clone RP23-271M19, complete sequence
          Length = 188354

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     aaagcaaagaaagtttcaca 99
              ||||||||||||||||||||
Sbjct: 144943 aaagcaaagaaagtttcaca 144962

to top

>gb|DQ400495.1| Aldrichina grahami clone SCUBP06024 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 485

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 513 attgttggatttattgtaat 532
           ||||||||||||||||||||
Sbjct: 295 attgttggatttattgtaat 314

to top

>gb|DQ400490.1| Aldrichina grahami clone SCUBP06019 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 485

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 513 attgttggatttattgtaat 532
           ||||||||||||||||||||
Sbjct: 295 attgttggatttattgtaat 314

to top

>gb|DQ400488.1| Lucilia sericata clone SCUBP06017 cytochrome b (cytb) gene, partial
           cds; mitochondrial
          Length = 485

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 513 attgttggatttattgtaat 532
           ||||||||||||||||||||
Sbjct: 295 attgttggatttattgtaat 314

to top

>gb|AF269398.1|AF269398 Staphylococcus epidermidis strain SR1 clone step.1003b10 genomic
           sequence
          Length = 2856

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 512 cattgttggatttattgtaa 531
           ||||||||||||||||||||
Sbjct: 166 cattgttggatttattgtaa 147

to top

>emb|BX927364.4| Zebrafish DNA sequence from clone CH211-20H7 in linkage group 14,
             complete sequence
          Length = 94162

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   tccatttataaacttcaata 462
             ||||||||||||||||||||
Sbjct: 71386 tccatttataaacttcaata 71367

to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 521      atttattgtaattatttcta 540
                ||||||||||||||||||||
Sbjct: 11961979 atttattgtaattatttcta 11961960

to top

>gb|AY879238.1| Sarcophaga crassipalpis cytochrome b (cytb) gene, partial cds;
           mitochondrial
          Length = 428

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 513 attgttggatttattgtaat 532
           ||||||||||||||||||||
Sbjct: 264 attgttggatttattgtaat 283

to top

>gb|AF269834.1|AF269834 Staphylococcus epidermidis strain SR1 clone step.1025f12 genomic
            sequence
          Length = 3227

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 512  cattgttggatttattgtaa 531
            ||||||||||||||||||||
Sbjct: 2605 cattgttggatttattgtaa 2624

to top

>dbj|AP005305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0024C06
          Length = 177529

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   atttattgtaattatttcta 540
             ||||||||||||||||||||
Sbjct: 13474 atttattgtaattatttcta 13455

to top

>dbj|AP005487.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1212_C09
          Length = 120818

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 521    atttattgtaattatttcta 540
              ||||||||||||||||||||
Sbjct: 111124 atttattgtaattatttcta 111105

to top

>gb|AC154594.2| Mus musculus BAC clone RP23-350L7 from chromosome 14, complete sequence
          Length = 195046

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    cctttctctttcaaactctc 145
              ||||||||||||||||||||
Sbjct: 160997 cctttctctttcaaactctc 161016

to top

>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 512     cattgttggatttattgtaa 531
               ||||||||||||||||||||
Sbjct: 2032805 cattgttggatttattgtaa 2032786

to top

>emb|Z81052.1|CED2023 Caenorhabditis elegans Cosmid D2023, complete sequence
          Length = 40344

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 442   atccatttataaacttcaat 461
             ||||||||||||||||||||
Sbjct: 10855 atccatttataaacttcaat 10874


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,731,113
Number of Sequences: 3902068
Number of extensions: 5731113
Number of successful extensions: 108337
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108166
Number of HSP's gapped (non-prelim): 171
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result