ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23e17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016667.1| Zea mays clone Contig500 mRNA sequence 212 1e-51
2gb|AY107261.1| Zea mays PCO091441 mRNA sequence 212 1e-51
3ref|NM_193124.1| Oryza sativa (japonica cultivar-group), mRNA 182 1e-42
4ref|XM_506495.1| PREDICTED Oryza sativa (japonica cultivar-group... 182 1e-42
5dbj|AK065122.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 1e-42
6dbj|AK060807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 5e-23
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 64 7e-07
8dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic D... 64 7e-07
9dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic D... 64 7e-07
10gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete s... 46 0.16
11gb|AC142145.3| Mus musculus BAC clone RP24-69D13 from chromosome... 44 0.64
12emb|CR352233.9| Zebrafish DNA sequence from clone CH211-193J5 in... 44 0.64
13dbj|AK079493.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 44 0.64
14ref|XM_719528.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 2.5
15gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Can... 42 2.5
16gb|AC024757.1| Caenorhabditis elegans cosmid Y37E11AL, complete ... 40 10.0
17ref|NM_197657.1| Oryza sativa (japonica cultivar-group) putative... 40 10.0
18gb|AC154107.3| Mus musculus BAC clone RP23-67L1 from chromosome ... 40 10.0
19gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 10.0
20gb|AC137596.2| Oryza sativa (japonica cultivar-group) chromosome... 40 10.0
21gb|AC147370.4| Mus musculus BAC clone RP24-243N3 from chromosome... 40 10.0
22ref|XM_572519.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 10.0
23gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome... 40 10.0
24gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosom... 40 10.0
25gb|AC122430.4| Mus musculus BAC clone RP24-176F14 from chromosom... 40 10.0
26gb|AC022884.12| Homo sapiens chromosome 18, clone RP11-449D8, co... 40 10.0
27emb|CR536602.5| Zebrafish DNA sequence from clone bGZ-160O4, com... 40 10.0
28gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 10.0
29gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 10.0
30ref|NM_060898.1| Caenorhabditis elegans C17H1.8 (C17H1.8) mRNA, ... 40 10.0
31gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, r... 40 10.0
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 10.0
33dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 10.0
34dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic D... 40 10.0
35dbj|AK064698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 10.0
36gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34... 40 10.0
37gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 10.0
38emb|Z92777.1|CEC17H1 Caenorhabditis elegans Cosmid C17H1, comple... 40 10.0 
>gb|BT016667.1| Zea mays clone Contig500 mRNA sequence
          Length = 1741

 Score =  212 bits (107), Expect = 1e-51
 Identities = 203/235 (86%)
 Strand = Plus / Minus

                                                                        
Query: 336  tgaacacaaggtgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgt 395
            ||||||||||||||||||| ||||| ||||||||||| |  ||||| ||||||||||| |
Sbjct: 1342 tgaacacaaggtgatggcaagtgccatcgcaagggtatgggcagtctgtgtacttggcat 1283

                                                                        
Query: 396  tgcccctctcgaagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgag 455
            | |||||||||||||||||||| ||||| || || |||||| ||||||| |||||||| |
Sbjct: 1282 tccccctctcgaagaaccagtccccgacagcgtcagcgattttcttgttaccaagacgtg 1223

                                                                        
Query: 456  gagagttgctcgagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagt 515
            | |||||| ||| |||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1222 gcgagttgttcgcgtaccaagtatcctgtctctcgctctggcaatgagcaaaacatgagt 1163

                                                                   
Query: 516  tgataaataccccattctgccctgacgcggagaaacccttcacggcgttaagcat 570
            |||| || |  ||||| |||| ||| || ||||||||| ||||||| | ||||||
Sbjct: 1162 tgatgaacagaccattttgccttgatgcagagaaacccctcacggcatcaagcat 1108



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 646  agaccttggggatcagccgttttgggagccaaactctcttgaagctgccacacgtcataa 705
            ||||||||||||||||| ||| | || |||| ||| | ||||||||||||||||||||| 
Sbjct: 1031 agaccttggggatcagctgttctaggggccacactttgttgaagctgccacacgtcatag 972

                                   
Query: 706  gcagtgttcacaataaaagttgg 728
            |||||||||| || |||||||||
Sbjct: 971  gcagtgttcaaaacaaaagttgg 949
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>gb|AY107261.1| Zea mays PCO091441 mRNA sequence
          Length = 1409

 Score =  212 bits (107), Expect = 1e-51
 Identities = 203/235 (86%)
 Strand = Plus / Minus

                                                                        
Query: 336  tgaacacaaggtgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgt 395
            ||||||||||||||||||| ||||| ||||||||||| |  ||||| ||||||||||| |
Sbjct: 1036 tgaacacaaggtgatggcaagtgccatcgcaagggtatgggcagtctgtgtacttggcat 977

                                                                        
Query: 396  tgcccctctcgaagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgag 455
            | |||||||||||||||||||| ||||| || || |||||| ||||||| |||||||| |
Sbjct: 976  tccccctctcgaagaaccagtccccgacagcgtcagcgattttcttgttaccaagacgtg 917

                                                                        
Query: 456  gagagttgctcgagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagt 515
            | |||||| ||| |||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 916  gcgagttgttcgcgtaccaagtatcctgtctctcgctctggcaatgagcaaaacatgagt 857

                                                                   
Query: 516  tgataaataccccattctgccctgacgcggagaaacccttcacggcgttaagcat 570
            |||| || |  ||||| |||| ||| || ||||||||| ||||||| | ||||||
Sbjct: 856  tgatgaacagaccattttgccttgatgcagagaaacccctcacggcatcaagcat 802



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 646 agaccttggggatcagccgttttgggagccaaactctcttgaagctgccacacgtcataa 705
           ||||||||||||||||| ||| | || |||| ||| | ||||||||||||||||||||| 
Sbjct: 725 agaccttggggatcagctgttctaggggccacactttgttgaagctgccacacgtcatag 666

                                  
Query: 706 gcagtgttcacaataaaagttgg 728
           |||||||||| || |||||||||
Sbjct: 665 gcagtgttcaaaacaaaagttgg 643
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>ref|NM_193124.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1221

 Score =  182 bits (92), Expect = 1e-42
 Identities = 312/384 (81%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                        
Query: 347  tgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgttgcccctctcg 406
            |||||||| || || || |||||||| |||||||| |||||||| ||||   |||| |||
Sbjct: 1196 tgatggcaggtaccatcacaagggtatgcacagtctgtgtacttcgcgtctgccctatcg 1137

                                                                        
Query: 407  aagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgaggagagttgctc 466
            || |||||||| || || ||||| || ||||||||||| || ||||||||||| |  |  
Sbjct: 1136 aaaaaccagtcgcctactgcttcagcaattctcttgttaccgagacgaggagaatcccct 1077

                                                                        
Query: 467  gagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacc 526
            | ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  
Sbjct: 1076 gcgtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaaga 1017

                                                                        
Query: 527  ccattctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct-aagcca 585
            || ||||||| ||   ||||||||||| |||| || |  ||||||| |||||| || || 
Sbjct: 1016 ccgttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcctgaaacct 957

                                                                        
Query: 586  tttagaaactgaagttgattgctattacaagacgcgtaattctgcttgcatctttgccat 645
            | || ||| || ||||| ||||||||||| || || | ||||  | | |||| | |||||
Sbjct: 956  tgtaaaaattgcagttggttgctattacaggaggcatgattcatcctacatcctcgccat 897

                                                                        
Query: 646  agaccttggggatcagccgttttgggagccaaactctcttgaagctgccacacgtcataa 705
            |||||||| ||||||||| ||||||| |||| ||| | ||||||||||||||| ||||||
Sbjct: 896  agaccttgcggatcagcccttttgggggccacactttgttgaagctgccacacatcataa 837

                                    
Query: 706  gcagtgttcacaataaaagttgga 729
            |||||||||| |||||||||||||
Sbjct: 836  gcagtgttcaaaataaaagttgga 813
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>ref|XM_506495.1| PREDICTED Oryza sativa (japonica cultivar-group), P0455H11.118-1 mRNA
          Length = 1744

 Score =  182 bits (92), Expect = 1e-42
 Identities = 312/384 (81%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                        
Query: 347  tgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgttgcccctctcg 406
            |||||||| || || || |||||||| |||||||| |||||||| ||||   |||| |||
Sbjct: 1334 tgatggcaggtaccatcacaagggtatgcacagtctgtgtacttcgcgtctgccctatcg 1275

                                                                        
Query: 407  aagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgaggagagttgctc 466
            || |||||||| || || ||||| || ||||||||||| || ||||||||||| |  |  
Sbjct: 1274 aaaaaccagtcgcctactgcttcagcaattctcttgttaccgagacgaggagaatcccct 1215

                                                                        
Query: 467  gagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacc 526
            | ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  
Sbjct: 1214 gcgtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaaga 1155

                                                                        
Query: 527  ccattctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct-aagcca 585
            || ||||||| ||   ||||||||||| |||| || |  ||||||| |||||| || || 
Sbjct: 1154 ccgttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcctgaaacct 1095

                                                                        
Query: 586  tttagaaactgaagttgattgctattacaagacgcgtaattctgcttgcatctttgccat 645
            | || ||| || ||||| ||||||||||| || || | ||||  | | |||| | |||||
Sbjct: 1094 tgtaaaaattgcagttggttgctattacaggaggcatgattcatcctacatcctcgccat 1035

                                                                        
Query: 646  agaccttggggatcagccgttttgggagccaaactctcttgaagctgccacacgtcataa 705
            |||||||| ||||||||| ||||||| |||| ||| | ||||||||||||||| ||||||
Sbjct: 1034 agaccttgcggatcagcccttttgggggccacactttgttgaagctgccacacatcataa 975

                                    
Query: 706  gcagtgttcacaataaaagttgga 729
            |||||||||| |||||||||||||
Sbjct: 974  gcagtgttcaaaataaaagttgga 951
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>dbj|AK065122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O22, full
            insert sequence
          Length = 1744

 Score =  182 bits (92), Expect = 1e-42
 Identities = 312/384 (81%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                        
Query: 347  tgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgttgcccctctcg 406
            |||||||| || || || |||||||| |||||||| |||||||| ||||   |||| |||
Sbjct: 1334 tgatggcaggtaccatcacaagggtatgcacagtctgtgtacttcgcgtctgccctatcg 1275

                                                                        
Query: 407  aagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgaggagagttgctc 466
            || |||||||| || || ||||| || ||||||||||| || ||||||||||| |  |  
Sbjct: 1274 aaaaaccagtcgcctactgcttcagcaattctcttgttaccgagacgaggagaatcccct 1215

                                                                        
Query: 467  gagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacc 526
            | ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  
Sbjct: 1214 gcgtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaaga 1155

                                                                        
Query: 527  ccattctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct-aagcca 585
            || ||||||| ||   ||||||||||| |||| || |  ||||||| |||||| || || 
Sbjct: 1154 ccgttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcctgaaacct 1095

                                                                        
Query: 586  tttagaaactgaagttgattgctattacaagacgcgtaattctgcttgcatctttgccat 645
            | || ||| || ||||| ||||||||||| || || | ||||  | | |||| | |||||
Sbjct: 1094 tgtaaaaattgcagttggttgctattacaggaggcatgattcatcctacatcctcgccat 1035

                                                                        
Query: 646  agaccttggggatcagccgttttgggagccaaactctcttgaagctgccacacgtcataa 705
            |||||||| ||||||||| ||||||| |||| ||| | ||||||||||||||| ||||||
Sbjct: 1034 agaccttgcggatcagcccttttgggggccacactttgttgaagctgccacacatcataa 975

                                    
Query: 706  gcagtgttcacaataaaagttgga 729
            |||||||||| |||||||||||||
Sbjct: 974  gcagtgttcaaaataaaagttgga 951
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>dbj|AK060807.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G03, full
            insert sequence
          Length = 1466

 Score =  117 bits (59), Expect = 5e-23
 Identities = 276/347 (79%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                        
Query: 347  tgatggcatgtgccgtcgcaagggtacgcacagtcggtgtacttggcgttgcccctctcg 406
            |||||||| || || || |||||||| |||||||| |||||||| ||||   |||| |||
Sbjct: 1071 tgatggcaggtaccatcacaagggtatgcacagtctgtgtacttcgcgtctgccctatcg 1012

                                                                        
Query: 407  aagaaccagtcaccgaccgcttctgcgattctcttgttgccaagacgaggagagttgctc 466
            || |||||||| || || ||||| || ||||||||||| || ||||||||||| |  |  
Sbjct: 1011 aaaaaccagtcgcctactgcttcagcaattctcttgttaccgagacgaggagaatcccct 952

                                                                        
Query: 467  gagtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacc 526
            | ||||| ||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  
Sbjct: 951  gcgtaccgtgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaaga 892

                                                                        
Query: 527  ccattctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct-aagcca 585
            || ||||||| ||   ||||||||||| |||| || |  ||||||| |||||| || || 
Sbjct: 891  ccgttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcctgaaacct 832

                                                                        
Query: 586  tttagaaactgaagttgattgctattacaagacgcgtaattctgcttgcatctttgccat 645
            | || ||| || ||||| ||||||||||| || || | ||||  | | |||| | |||||
Sbjct: 831  tgtaaaaattgcagttggttgctattacaggaggcatgattcatcctacatcctcgccat 772

                                                           
Query: 646  agaccttggggatcagccgttttgggagccaaactctcttgaagctg 692
            |||||||| ||||||||| ||||||| |||| ||| | |||||||||
Sbjct: 771  agaccttgcggatcagcccttttgggggccacactttgttgaagctg 725



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 690 ctgccacacgtcataagcagtgttcacaataaaagttgga 729
           ||||||||| |||||||||||||||| |||||||||||||
Sbjct: 626 ctgccacacatcataagcagtgttcaaaataaaagttgga 587
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 690      ctgccacacgtcataagcagtgttcacaataaaagttgga 729
                ||||||||| |||||||||||||||| |||||||||||||
Sbjct: 26289683 ctgccacacatcataagcagtgttcaaaataaaagttgga 26289644



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 641      gccatagaccttggggatcagccgttttgggagccaaactctcttgaagctg 692
                ||||||||||||| ||||||||| ||||||| |||| ||| | |||||||||
Sbjct: 26289833 gccatagaccttgcggatcagcccttttgggggccacactttgttgaagctg 26289782



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                            
Query: 469      gtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacccc 528
                ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  ||
Sbjct: 26290093 gtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaagacc 26290034

                                                                   
Query: 529      attctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 579
                 ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 26290033 gttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 26289983
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>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455H11
          Length = 101607

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 690   ctgccacacgtcataagcagtgttcacaataaaagttgga 729
             ||||||||| |||||||||||||||| |||||||||||||
Sbjct: 64311 ctgccacacatcataagcagtgttcaaaataaaagttgga 64272



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 641   gccatagaccttggggatcagccgttttgggagccaaactctcttgaagctg 692
             ||||||||||||| ||||||||| ||||||| |||| ||| | |||||||||
Sbjct: 64461 gccatagaccttgcggatcagcccttttgggggccacactttgttgaagctg 64410



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                         
Query: 469   gtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacccc 528
             ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  ||
Sbjct: 64721 gtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaagacc 64662

                                                                
Query: 529   attctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 579
              ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 64661 gttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 64611
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>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1332_C12
          Length = 67349

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 690  ctgccacacgtcataagcagtgttcacaataaaagttgga 729
            ||||||||| |||||||||||||||| |||||||||||||
Sbjct: 9261 ctgccacacatcataagcagtgttcaaaataaaagttgga 9222



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 641  gccatagaccttggggatcagccgttttgggagccaaactctcttgaagctg 692
            ||||||||||||| ||||||||| ||||||| |||| ||| | |||||||||
Sbjct: 9411 gccatagaccttgcggatcagcccttttgggggccacactttgttgaagctg 9360



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 469  gtaccatgtatcctgcctctcgctctggcaatgggcaaaacatgagttgataaatacccc 528
            ||||||||| ||||| ||||| || |||||||| || ||||| ||||||||||| |  ||
Sbjct: 9671 gtaccatgtgtcctgtctctcactttggcaatgtgcgaaacaggagttgataaaaagacc 9612

                                                               
Query: 529  attctgccctgacgcggagaaacccttcacggcgttaagcatttcattcct 579
             ||||||| ||   ||||||||||| |||| || |  ||||||| ||||||
Sbjct: 9611 gttctgccttgcgccggagaaacccctcaccgcatcgagcatttgattcct 9561
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>gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete sequence
          Length = 129414

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 494   tggcaatgggcaaaacatgagttgataaatacccc 528
             |||||||||||||||||||| || ||||| |||||
Sbjct: 89597 tggcaatgggcaaaacatgaatttataaacacccc 89563
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>gb|AC142145.3| Mus musculus BAC clone RP24-69D13 from chromosome 8, complete sequence
          Length = 169014

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 170   ctgccctatcatatcatatctc 191
             ||||||||||||||||||||||
Sbjct: 84096 ctgccctatcatatcatatctc 84117
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>emb|CR352233.9| Zebrafish DNA sequence from clone CH211-193J5 in linkage group 13,
             complete sequence
          Length = 149899

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 411   accagtcaccgaccgcttctgcgatt 436
             |||||| |||||||||||||||||||
Sbjct: 74910 accagttaccgaccgcttctgcgatt 74935
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>dbj|AK079493.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130059I02 product:unclassifiable, full
            insert sequence
          Length = 5143

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 170  ctgccctatcatatcatatctc 191
            ||||||||||||||||||||||
Sbjct: 4301 ctgccctatcatatcatatctc 4322
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>ref|XM_719528.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04338)
           partial mRNA
          Length = 2259

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   attattataatttcgtattat 21
           |||||||||||||||||||||
Sbjct: 921 attattataatttcgtattat 901
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>gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179085

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 302   caaaggatatgatggtattaa 322
             |||||||||||||||||||||
Sbjct: 28071 caaaggatatgatggtattaa 28091
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>gb|AC024757.1| Caenorhabditis elegans cosmid Y37E11AL, complete sequence
          Length = 68130

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   acttgcacccatcttcttct 238
             ||||||||||||||||||||
Sbjct: 24890 acttgcacccatcttcttct 24871
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>ref|NM_197657.1| Oryza sativa (japonica cultivar-group) putative pectin acetylesterase
            (OSJNBa0015J15.27), mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 471  accatgtatcctgcctctcgctctggcaatgggcaaaaca 510
            ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 1027 accatgtttcctgcagctcactctggcaatgtgcaaaaca 988
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>gb|AC154107.3| Mus musculus BAC clone RP23-67L1 from chromosome 8, complete sequence
          Length = 246658

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tatcatatcatatctcaggt 195
             ||||||||||||||||||||
Sbjct: 94286 tatcatatcatatctcaggt 94267
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
             sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   aaacttgcacccatcttctt 236
             ||||||||||||||||||||
Sbjct: 85591 aaacttgcacccatcttctt 85572
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>gb|AC137596.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
             OSJNBb0031H05, complete sequence
          Length = 141200

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 574   attcctaagccatttagaaa 593
             ||||||||||||||||||||
Sbjct: 17979 attcctaagccatttagaaa 17998
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>gb|AC147370.4| Mus musculus BAC clone RP24-243N3 from chromosome 12, complete sequence
          Length = 162528

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 665   ttttgggagccaaactctct 684
             ||||||||||||||||||||
Sbjct: 31420 ttttgggagccaaactctct 31439
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>ref|XM_572519.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNH03550) partial mRNA
          Length = 4866

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  aaacttgcacccatcttctt 236
            ||||||||||||||||||||
Sbjct: 3055 aaacttgcacccatcttctt 3074
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>gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome 13, complete sequence
          Length = 157531

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    aattggcaatggaaagaatc 112
             ||||||||||||||||||||
Sbjct: 54849 aattggcaatggaaagaatc 54830
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>gb|AC122323.3| Mus musculus BAC clone RP23-326N21 from chromosome 8, complete sequence
          Length = 212949

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    tatcatatcatatctcaggt 195
              ||||||||||||||||||||
Sbjct: 208268 tatcatatcatatctcaggt 208249
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>gb|AC122430.4| Mus musculus BAC clone RP24-176F14 from chromosome 12, complete
             sequence
          Length = 172764

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 665   ttttgggagccaaactctct 684
             ||||||||||||||||||||
Sbjct: 41809 ttttgggagccaaactctct 41790
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>gb|AC022884.12| Homo sapiens chromosome 18, clone RP11-449D8, complete sequence
          Length = 195139

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   tgtatcctgcctctcgctct 494
             ||||||||||||||||||||
Sbjct: 53508 tgtatcctgcctctcgctct 53489
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>emb|CR536602.5| Zebrafish DNA sequence from clone bGZ-160O4, complete sequence
          Length = 85135

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   atacgtgaaactaaaataac 136
             ||||||||||||||||||||
Sbjct: 47573 atacgtgaaactaaaataac 47592
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
              sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 471    accatgtatcctgcctctcgctctggcaatgggcaaaaca 510
              ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 129486 accatgtttcctgcagctcactctggcaatgtgcaaaaca 129447
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 634     catctttgccatagaccttg 653
               ||||||||||||||||||||
Sbjct: 1616508 catctttgccatagaccttg 1616527
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>ref|NM_060898.1| Caenorhabditis elegans C17H1.8 (C17H1.8) mRNA, complete cds
          Length = 1419

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 301  tcaaaggatatgatggtattaaag 324
            ||||||||||||||||||| ||||
Sbjct: 1112 tcaaaggatatgatggtatgaaag 1135



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 301 tcaaaggatatgatggtattaaag 324
           ||||||||||||||||||| ||||
Sbjct: 608 tcaaaggatatgatggtatgaaag 631
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>gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone
             BACR06M19, complete sequence
          Length = 183161

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   aagccatttagaaactgaag 599
             ||||||||||||||||||||
Sbjct: 31576 aagccatttagaaactgaag 31595
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 471      accatgtatcctgcctctcgctctggcaatgggcaaaaca 510
                ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 21076220 accatgtttcctgcagctcactctggcaatgtgcaaaaca 21076259
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 574      attcctaagccatttagaaa 593
                ||||||||||||||||||||
Sbjct: 21561353 attcctaagccatttagaaa 21561372
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>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0489D11
          Length = 150757

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    attcctaagccatttagaaa 593
              ||||||||||||||||||||
Sbjct: 122963 attcctaagccatttagaaa 122982
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>dbj|AK064698.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G02, full
            insert sequence
          Length = 1807

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 471  accatgtatcctgcctctcgctctggcaatgggcaaaaca 510
            ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 1405 accatgtttcctgcagctcactctggcaatgtgcaaaaca 1366
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>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the complete
              sequence
          Length = 287287

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 580    aagccatttagaaactgaag 599
              ||||||||||||||||||||
Sbjct: 140664 aagccatttagaaactgaag 140645
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 471      accatgtatcctgcctctcgctctggcaatgggcaaaaca 510
                ||||||| ||||||  ||| ||||||||||| ||||||||
Sbjct: 21087484 accatgtttcctgcagctcactctggcaatgtgcaaaaca 21087523
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>emb|Z92777.1|CEC17H1 Caenorhabditis elegans Cosmid C17H1, complete sequence
          Length = 37261

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 301   tcaaaggatatgatggtattaaag 324
             ||||||||||||||||||| ||||
Sbjct: 26517 tcaaaggatatgatggtatgaaag 26494



 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 301   tcaaaggatatgatggtattaaag 324
             ||||||||||||||||||| ||||
Sbjct: 22223 tcaaaggatatgatggtatgaaag 22200


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,882,663
Number of Sequences: 3902068
Number of extensions: 5882663
Number of successful extensions: 99361
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99182
Number of HSP's gapped (non-prelim): 171
length of query: 729
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 706
effective length of database: 17,143,297,704
effective search space: 12103168179024
effective search space used: 12103168179024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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