ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157 32 1.4
2ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi... 32 1.8
3AMOT_HUMAN (Q4VCS5) Angiomotin 32 2.4
4KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-a... 31 4.1
5ZN533_BRARE (Q6PBT9) Zinc finger protein 533 30 5.4
6T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspa... 30 5.4
7ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 ant... 30 5.4
8MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP) 30 7.0
9SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in... 30 7.0
10PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (... 30 7.0
11AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Iso... 30 9.1
12SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in... 30 9.1
13SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in... 30 9.1
14NEO1_HUMAN (Q92859) Neogenin precursor 30 9.1

>GP157_HUMAN (Q5UAW9) Probable G-protein coupled receptor 157|
          Length = 335

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 681 CNCCCTSSPRTHNPREVPPSTAPTCKDGSHRNARDGSKRPS 559
           C CCC+S P T +P   P + AP+    S  +     + PS
Sbjct: 294 CCCCCSSQPPTKSPAGTPKAPAPSKPGESQESQGTPGELPS 334



to top

>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
           (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1)
           (ArgBP1)
          Length = 513

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 25/87 (28%), Positives = 32/87 (36%)
 Frame = -3

Query: 687 PACNCCCTSSPRTHNPREVPPSTAPTCKDGSHRNARDGSKRPSRGVA*AHQEILPPVVRS 508
           P       S+P    P  VP STAP    G   N  DG   P+           PPVV S
Sbjct: 292 PPLPATSASAPAPLVPATVPSSTAPNAAAGGAPNLADGFTSPT-----------PPVVSS 340

Query: 507 SPCRRSVHRDAEEVRQHAQNRDGVHHS 427
           +P           V+ ++ NR    H+
Sbjct: 341 TP------PTGHPVQFYSMNRPASRHT 361



to top

>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 39/143 (27%), Positives = 51/143 (35%), Gaps = 5/143 (3%)
 Frame = -1

Query: 623  PQPLPAKMVAIAMLGMAANVPLGVWREHTKKFSPQWFAAVHAAVPFIAMLRKSVNMPRTA 444
            P P+ A   A A+   AA +        T   +    A   AA P  A          TA
Sbjct: 884  PAPVAAAATAAAITATAATIT-------TTMVAAAPVAVAAAAAPAAAAAPSPATAAATA 936

Query: 443  MVFTIAASILGQ-----TIGSRAERIRLKTLAAKGTAGPAATVTVMYPDKSGSCSDAEGK 279
               + AA+  GQ     ++ S A        AA     PAA   V  P      + A  +
Sbjct: 937  AAVSPAAA--GQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQ 994

Query: 278  AWDPLALKIPGSANAGAPAPTPS 210
            A  P   + P SA A AP P P+
Sbjct: 995  ASAPAQTQAPTSAPAVAPTPAPT 1017



to top

>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated|
           protein 10.11) (High sulfur keratin-associated protein
           10.11) (Keratin-associated protein 18-11)
           (Keratin-associated protein 18.11)
          Length = 298

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
 Frame = -1

Query: 299 CSDAEGKAWD----PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLP 132
           CS A   +W     P +   P  +     AP PS+      +  P +     C   AC P
Sbjct: 9   CSSAYSDSWQVDDCPESCCEPPCSAPSCCAPAPSLSL----VCTPVSCVSSPCCQAACEP 64

Query: 131 LGETSGIRCYSTTSCCE--TCRG--CVVSPC 51
               SG     T SCC+  +C+   C  SPC
Sbjct: 65  SACQSGCTSSCTPSCCQQSSCQPACCTSSPC 95



to top

>ZN533_BRARE (Q6PBT9) Zinc finger protein 533|
          Length = 492

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 374 KTLAAKGTAGPAATVTVMYPDK-SGSCSDAEGKAWDPLAL-KIPGSANAGAPAP 219
           KT+ +  T     T T       + SCSD   K+ +PLA  K+P S  A  PAP
Sbjct: 192 KTITSTSTNTTTTTTTTSSCTAVTASCSDQTEKSTEPLAAHKVPASPQAFVPAP 245



to top

>T4S5_HUMAN (O14894) Transmembrane 4 L6 family member 5 (Tetraspan|
           transmembrane protein L6H)
          Length = 197

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +1

Query: 409 CPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTAANHWGENFLVCSRHTPRGTFAAIPSI 588
           C R     + T+ ++ ++ + L +  NG  +WT  NH      +       G     P I
Sbjct: 6   CARCVGLSLITLCLVCIVANALLLVPNGETSWTNTNHLSLQVWLMGGFIGGGLMVLCPGI 65

Query: 589 AMATIFAGRGC 621
           A A    G+GC
Sbjct: 66  A-AVRAGGKGC 75



to top

>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)|
          Length = 1822

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 233 GAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRGCVVSP 54
           GAP P  ++         PG+ ++L  + L  LPL     + C+   +CC+ C    + P
Sbjct: 690 GAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKAC--LALLP 747

Query: 53  CICN 42
           C CN
Sbjct: 748 C-CN 750



to top

>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)|
          Length = 642

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 311 KSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPS 210
           +SG   DA G  + PL    P  A A APAP P+
Sbjct: 277 RSGEAIDALGAHFAPLPAPTPAPAPAPAPAPAPA 310



to top

>SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia|
           protein)
          Length = 331

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 30/129 (23%), Positives = 46/129 (35%)
 Frame = -1

Query: 455 PRTAMVFTIAASILGQTIGSRAERIRLKTLAAKGTAGPAATVTVMYPDKSGSCSDAEGKA 276
           P  A    +AA + G  +G  A  +        G++    +        +G+ S A   +
Sbjct: 12  PTAAAAAAVAAGV-GGGVGGGASGVATANTNTTGSSSTGGS------SSAGTTSSANTSS 64

Query: 275 WDPLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYST 96
               +L   G  +AG  A   S+         P    Y+    L C   G    + C S 
Sbjct: 65  SSSSSLSSAGGGDAGMSADLTSL------FECPVCFDYVLPPILQCSS-GHLVCVSCRSK 117

Query: 95  TSCCETCRG 69
            +CC TCRG
Sbjct: 118 LTCCPTCRG 126



to top

>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1338

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 382 MRSALDPMVCPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTA 510
           ++S LDP V  R+  A   T  V  ++TD   +  +G   W A
Sbjct: 730 VKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAA 772



to top

>AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Isolectin D)|
          Length = 213

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
 Frame = -1

Query: 248 GSANAGAPAPTPSMCF*PWNLAAPGTDFYLS-CM*LACL---PLGETSGIRCYSTTSCCE 81
           GS + G   P  ++C   W     G++F    C   AC    P G+ +G R  +   CC 
Sbjct: 117 GSQSGGKLCPN-NLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCS 175

Query: 80  TCRGCVVSPCIC 45
               C + P  C
Sbjct: 176 KWGSCGIGPGYC 187



to top

>SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia|
           protein)
          Length = 314

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
 Frame = -1

Query: 365 AAKGTAGPAA-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 189
           A  G  G A  T T      +G+ S A   +    +L   G  +AG  A   S+      
Sbjct: 17  AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70

Query: 188 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 69
              P    Y+    L C   G    + C S  +CC TCRG
Sbjct: 71  FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109



to top

>SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia|
           protein)
          Length = 314

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
 Frame = -1

Query: 365 AAKGTAGPAA-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 189
           A  G  G A  T T      +G+ S A   +    +L   G  +AG  A   S+      
Sbjct: 17  AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70

Query: 188 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 69
              P    Y+    L C   G    + C S  +CC TCRG
Sbjct: 71  FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109



to top

>NEO1_HUMAN (Q92859) Neogenin precursor|
          Length = 1461

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 29   ISASDYRCMD*QHNHDKFHSRTWYYSTLFHLSHPGAGKPITYTINRNQYPGRLNST--VR 202
            ISA     +D  H+H  FHS +       HL HPG+  PI  +++ +    R NST  VR
Sbjct: 1250 ISAHPIHSLDNPHHH--FHSSSLASPARSHLYHPGSPWPIGTSMSLSD---RANSTESVR 1304

Query: 203  ST 208
            +T
Sbjct: 1305 NT 1306


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,071,935
Number of Sequences: 219361
Number of extensions: 2132218
Number of successful extensions: 6713
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6685
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top