Clone Name | rbasd22p04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467523.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1763 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Minus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 1582 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 1523 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1522 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 1463 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 1462 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 1403 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 1402 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 1343 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 1342 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 1288
>ref|XM_506946.1| PREDICTED Oryza sativa (japonica cultivar-group), P0654B04.16-1 mRNA Length = 1805 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Minus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 1624 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 1565 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1564 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 1505 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 1504 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 1445 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 1444 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 1385 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 1384 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 1330
>ref|XM_467524.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1983 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Minus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 1626 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 1567 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1566 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 1507 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 1506 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 1447 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 1446 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 1387 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 1386 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 1332
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Plus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 29953338 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 29953397 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 29953398 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 29953457 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 29953458 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 29953517 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 29953518 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 29953577 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 29953578 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 29953632 Score = 85.7 bits (43), Expect = 1e-13 Identities = 59/65 (90%) Strand = Plus / Plus Query: 195 gtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctcttgccttctc 254 ||||| |||||||| ||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 29965636 gtgtctgggctgaaagacattccagatatctgaccgaagaagtccagctcttgccttctg 29965695 Query: 255 ttgta 259 ||||| Sbjct: 29965696 ttgta 29965700 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 139 caaactggaggaggctaccatacgttctatcccacac 175 |||||||||||||||| ||||| |||||||||||||| Sbjct: 29963924 caaactggaggaggctgccatatgttctatcccacac 29963960
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Plus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 53614 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 53673 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 53674 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 53733 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 53734 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 53793 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 53794 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 53853 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 53854 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 53908 Score = 85.7 bits (43), Expect = 1e-13 Identities = 59/65 (90%) Strand = Plus / Plus Query: 195 gtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctcttgccttctc 254 ||||| |||||||| ||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 65912 gtgtctgggctgaaagacattccagatatctgaccgaagaagtccagctcttgccttctg 65971 Query: 255 ttgta 259 ||||| Sbjct: 65972 ttgta 65976 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 139 caaactggaggaggctaccatacgttctatcccacac 175 |||||||||||||||| ||||| |||||||||||||| Sbjct: 64200 caaactggaggaggctgccatatgttctatcccacac 64236
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Plus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 110303 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 110362 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 110363 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 110422 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 110423 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 110482 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 110483 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 110542 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 110543 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 110597
>dbj|AK112042.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D04, full insert sequence Length = 1262 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Minus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 887 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 828 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 827 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 768 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 767 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 708 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 707 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 648 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 647 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 593
>dbj|AK111973.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A04, full insert sequence Length = 943 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Minus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 761 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 702 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 701 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 642 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 641 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 582 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 581 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 522 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 521 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 467
>dbj|AK111506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D05, full insert sequence Length = 1806 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Minus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 1624 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 1565 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1564 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 1505 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 1504 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 1445 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 1444 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 1385 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 1384 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 1330
>dbj|AK098883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H19, full insert sequence Length = 1764 Score = 242 bits (122), Expect = 8e-61 Identities = 251/295 (85%) Strand = Plus / Minus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||||||||||||| || || |||| Sbjct: 1582 tatacagacggccaaactggaggaggctgccgtatgttctatcccacacaccgacaaaaa 1523 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1522 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 1463 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 1462 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 1403 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 1402 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 1343 Query: 367 tcaatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||| ||||||| | ||| || || |||| ||| ||||| || ||||||||||| Sbjct: 1342 tcaaaacatggagggatttagagagattccgcgcatcccaaatccggcatgtctt 1288
>gb|AY596536.1| Saccharum officinarum clone SCJFRZ2007F05, complete sequence Length = 1915 Score = 230 bits (116), Expect = 3e-57 Identities = 248/293 (84%) Strand = Plus / Minus Query: 129 tacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaagg 188 |||||||| || ||||| || ||||| |||||| | ||||||||||| || |||||||| Sbjct: 1500 tacaggcggccgaactgaagcaggctgccatacatcctatcccacacaccgacgaaaagt 1441 Query: 189 gcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctcttgc 248 | ||| ||||| |||||||| ||| | || |||||||| ||||||||||||||||| ||| Sbjct: 1440 gtgtcagtgtctgggctgaacgacgtgccggatatctcgccaaagaagtccagctcctgc 1381 Query: 249 cttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgccatc 308 ||| | |||||||| |||||||| ||| |||||||||||||||| || ||||| ||||| Sbjct: 1380 cttttgttgtagtcactcttcacgtcgtagatgtgcacaaagtcagcaggttcggccatg 1321 Query: 309 gacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctttc 368 |||| |||||| || | ||| |||||||||||||| | ||||||||||||||||| || Sbjct: 1320 gacatgaactggccatccgaggtgaagcggatcgaccggatggctccaaggttacccctc 1261 Query: 369 aatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 || |||||||| | ||| || || |||||| |||||||||||||||||||||| Sbjct: 1260 aacacatggacggattttgagagattcctcacgtcccagattcggcatgtctt 1208
>dbj|AK111669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154D17, full insert sequence Length = 1983 Score = 228 bits (115), Expect = 1e-56 Identities = 217/252 (86%) Strand = Plus / Minus Query: 127 tatacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaa 186 ||||||| || ||||||||||||||||| || || |||| ||||||||| || || |||| Sbjct: 1626 tatacagacggccaaactggaggaggctgccgtatgttcaatcccacacaccgacaaaaa 1567 Query: 187 gggcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctctt 246 | ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1566 gcatgtcggtgtccgggctgaaagacatgccagatatctcaccaaagaagtccagctctt 1507 Query: 247 gccttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgcca 306 ||||||| |||| || ||| |||||||||| ||| ||||||||||||||||| |||| Sbjct: 1506 gccttctggtgtaatcactcccgacatcgaagacgtggacaaagtccgctggttctgcca 1447 Query: 307 tcgacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctt 366 |||||| |||||| || | |||||||||||||| ||||| ||||||||||||||||| Sbjct: 1446 tcgacatgaactgcccatctgacgtgaagcggattgatcttatggctccaaggttacccc 1387 Query: 367 tcaatacatgga 378 |||| ||||||| Sbjct: 1386 tcaaaacatgga 1375
>gb|AY106954.1| Zea mays PCO143990 mRNA sequence Length = 1884 Score = 222 bits (112), Expect = 7e-55 Identities = 247/293 (84%) Strand = Plus / Minus Query: 129 tacaggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaagg 188 |||||||| ||||| || || ||||| |||||| | ||||||||||| || |||||||| Sbjct: 1503 tacaggcggccaaattgtagcaggctgccatacatcctatcccacacaccaacgaaaagc 1444 Query: 189 gcgtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctcttgc 248 | ||| ||||| |||||||| || | || |||||||| ||||||||||||||||| ||| Sbjct: 1443 gtgtcagtgtctgggctgaacgatgtgccggatatctcgccaaagaagtccagctcctgc 1384 Query: 249 cttctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgccatc 308 ||| | |||||||| |||||||| ||| |||||||||||||||| || ||||| ||||| Sbjct: 1383 cttttgttgtagtcactcttcacgtcgtagatgtgcacaaagtcagcaggttcagccatg 1324 Query: 309 gacaggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctttc 368 |||| |||||| || | ||| ||||||||||| || | ||||||||||||||||| || Sbjct: 1323 gacatgaactggccatccgaggtgaagcggatggaccggatggctccaaggttacccctc 1264 Query: 369 aatacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 || |||||||| | ||| || ||||||||| |||||||||||||||||||||| Sbjct: 1263 aacacatggacggattttgaaaggttcctcacgtcccagattcggcatgtctt 1211
>gb|BT016291.1| Zea mays clone Contig124 mRNA sequence Length = 687 Score = 194 bits (98), Expect = 2e-46 Identities = 242/291 (83%) Strand = Plus / Minus Query: 131 caggcgcccaaactggaggaggctaccatacgttctatcccacacgcccacgaaaagggc 190 |||||| ||||| || || ||||| |||||| | |||||||||| || |||||||| | Sbjct: 357 caggcggccaaattgtagcaggctgccatacatcgtatcccacacaccaacgaaaagcgt 298 Query: 191 gtctgtgtccgggctgaangacatnccagatatctcaccaaagaagtccagctcttgcct 250 ||| ||||| |||||||| || | || |||||||| ||||||||||||||||| ||||| Sbjct: 297 gtcagtgtctgggctgaacgatgtgccggatatctcgccaaagaagtccagctcctgcct 238 Query: 251 tctcttgtagtcgctcttcacatcgaagatgtgcacaaagtccgctggttccgccatcga 310 | | |||||||| |||||||| ||| | |||||||||||||| || ||||| ||||| || Sbjct: 237 tttgttgtagtcactcttcacgtcgtaaatgtgcacaaagtcagcaggttcagccatgga 178 Query: 311 caggaactgnccgtacgacgtgaagcggatcgatctaatggctccaaggttacctttcaa 370 || |||||| || | ||| ||||||||||| || | ||||||||||||||||| |||| Sbjct: 177 catgaactggccatccgaggtgaagcggatggaccggatggctccaaggttacccctcaa 118 Query: 371 tacatggactgctttcgataggttcctcgcgtcccagattcggcatgtctt 421 |||||||| | ||| || ||||||||| ||||||| |||||||||||||| Sbjct: 117 cacatggacggattttgagaggttcctcacgtcccaaattcggcatgtctt 67
>gb|BT023993.1| Zea mays clone EL01N0409G03 mRNA sequence Length = 1294 Score = 184 bits (93), Expect = 2e-43 Identities = 222/266 (83%) Strand = Plus / Minus Query: 156 ccatacgttctatcccacacgcccacgaaaagggcgtctgtgtccgggctgaangacatn 215 |||||| | ||||||||||| || |||||||| | ||| ||||| |||||||| || | Sbjct: 1085 ccatacatcctatcccacacaccaacgaaaagcgtgtcagtgtctgggctgaacgatgtg 1026 Query: 216 ccagatatctcaccaaagaagtccagctcttgccttctcttgtagtcgctcttcacatcg 275 || |||||||| ||||||||||||||||| |||||| | |||||| | |||||||| ||| Sbjct: 1025 ccggatatctcgccaaagaagtccagctcctgccttttgttgtaggcactcttcacgtcg 966 Query: 276 aagatgtgcacaaagtccgctggttccgccatcgacaggaactgnccgtacgacgtgaag 335 | |||||||||||||| | ||||| ||||| |||| |||||| || | ||| |||||| Sbjct: 965 taaatgtgcacaaagtcaggaggttcagccatggacatgaactggccatccgaggtgaag 906 Query: 336 cggatcgatctaatggctccaaggttacctttcaatacatggactgctttcgataggttc 395 ||||| || | ||||||||||||||||| |||| |||||||| | ||| || |||||| Sbjct: 905 cggatggaccggatggctccaaggttacccctcaacacatggacggattttgagaggttc 846 Query: 396 ctcgcgtcccagattcggcatgtctt 421 ||| |||||||||||||||||||||| Sbjct: 845 ctcacgtcccagattcggcatgtctt 820
>gb|AY110591.1| Zea mays CL28492_1 mRNA sequence Length = 796 Score = 50.1 bits (25), Expect = 0.006 Identities = 79/97 (81%) Strand = Plus / Plus Query: 222 atctcaccaaagaagtccagctcttgccttctcttgtagtcgctcttcacatcgaagatg 281 ||||||||||||||||||||||| ||| | || |||| | |||| |||||||||||| Sbjct: 457 atctcaccaaagaagtccagctcctgcttcctgctgtacccactctcaacatcgaagatg 516 Query: 282 tgcacaaagtccgctggttccgccatcgacaggaact 318 || | |||||||| ||||| | ||||| || ||||| Sbjct: 517 tggatgaagtccgcgggttcagtcatcgccatgaact 553
>dbj|AP004898.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT01P23, TM0047b, complete sequence Length = 69411 Score = 50.1 bits (25), Expect = 0.006 Identities = 44/51 (86%) Strand = Plus / Plus Query: 182 gaaaagggcgtctgtgtccgggctgaangacatnccagatatctcaccaaa 232 |||||||| || |||||||| ||||| || || ||||||||||||||||| Sbjct: 42747 gaaaagggattcagtgtccggactgaaagagatgccagatatctcaccaaa 42797
>ref|NM_112179.1| Arabidopsis thaliana unknown protein AT3G13340 mRNA, complete cds Length = 2052 Score = 42.1 bits (21), Expect = 1.4 Identities = 40/47 (85%) Strand = Plus / Minus Query: 192 tctgtgtccgggctgaangacatnccagatatctcaccaaagaagtc 238 |||||||| |||||||| || || ||||| || || ||||||||||| Sbjct: 1488 tctgtgtcagggctgaaagatattccagagatttccccaaagaagtc 1442
>gb|AY344981.1| Sporisorium lepturi internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 673 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 gtccagctcttgccttctctt 256 ||||||||||||||||||||| Sbjct: 555 gtccagctcttgccttctctt 535
>gb|AC110245.10| Mus musculus chromosome 3, clone RP23-251B16, complete sequence Length = 241132 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 237 tccagctcttgccttctcttgtagt 261 ||||||| ||||||||||||||||| Sbjct: 78679 tccagctgttgccttctcttgtagt 78655
>gb|AY139803.1| Arabidopsis thaliana At3g13340/MDC11_13 mRNA, complete cds Length = 1344 Score = 42.1 bits (21), Expect = 1.4 Identities = 40/47 (85%) Strand = Plus / Minus Query: 192 tctgtgtccgggctgaangacatnccagatatctcaccaaagaagtc 238 |||||||| |||||||| || || ||||| || || ||||||||||| Sbjct: 1250 tctgtgtcagggctgaaagatattccagagatttccccaaagaagtc 1204
>gb|AY048298.1| Arabidopsis thaliana AT3g13340/MDC11_13 mRNA, complete cds Length = 2054 Score = 42.1 bits (21), Expect = 1.4 Identities = 40/47 (85%) Strand = Plus / Minus Query: 192 tctgtgtccgggctgaangacatnccagatatctcaccaaagaagtc 238 |||||||| |||||||| || || ||||| || || ||||||||||| Sbjct: 1490 tctgtgtcagggctgaaagatattccagagatttccccaaagaagtc 1444
>gb|AY740160.1| Sporisorium lepturi internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 1351 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 gtccagctcttgccttctctt 256 ||||||||||||||||||||| Sbjct: 603 gtccagctcttgccttctctt 583
>dbj|AB024034.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDC11 Length = 86233 Score = 42.1 bits (21), Expect = 1.4 Identities = 40/47 (85%) Strand = Plus / Minus Query: 192 tctgtgtccgggctgaangacatnccagatatctcaccaaagaagtc 238 |||||||| |||||||| || || ||||| || || ||||||||||| Sbjct: 74672 tctgtgtcagggctgaaagatattccagagatttccccaaagaagtc 74626
>gb|AC006263.1|AC006263 Homo sapiens chromosome 17, clone hCIT.187_K_10, complete sequence Length = 94742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ccagatatctcaccaaagaag 236 ||||||||||||||||||||| Sbjct: 48132 ccagatatctcaccaaagaag 48112
>ref|XM_483165.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1716 Score = 40.1 bits (20), Expect = 5.6 Identities = 39/46 (84%) Strand = Plus / Minus Query: 195 gtgtccgggctgaangacatnccagatatctcaccaaagaagtcca 240 ||||| || ||||| || || ||||| |||||||||||||| |||| Sbjct: 1391 gtgtcgggactgaacgaaatgccagaaatctcaccaaagaaatcca 1346
>ref|XM_507280.1| PREDICTED Oryza sativa (japonica cultivar-group), P0026F07.19 mRNA Length = 1924 Score = 40.1 bits (20), Expect = 5.6 Identities = 39/46 (84%) Strand = Plus / Minus Query: 195 gtgtccgggctgaangacatnccagatatctcaccaaagaagtcca 240 ||||| || ||||| || || ||||| |||||||||||||| |||| Sbjct: 1402 gtgtcgggactgaacgaaatgccagaaatctcaccaaagaaatcca 1357
>gb|BT013486.1| Lycopersicon esculentum clone 132170R, mRNA sequence Length = 1978 Score = 40.1 bits (20), Expect = 5.6 Identities = 69/86 (80%) Strand = Plus / Minus Query: 150 aggctaccatacgttctatcccacacgcccacgaaaagggcgtctgtgtccgggctgaan 209 ||||||||||| || | |||||| || || || ||||||| ||||| || || || || Sbjct: 1512 aggctaccatatgtgcgatcccagactccgacaaaaagggactctgtatcaggactaaaa 1453 Query: 210 gacatnccagatatctcaccaaagaa 235 |||| || ||||||||||||||||| Sbjct: 1452 gacagacctgatatctcaccaaagaa 1427
>gb|AC012085.4| Homo sapiens 12 BAC RP11-887P2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170269 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 157429 cagatatctcaccaaagaag 157410
>emb|BX088563.4| Human DNA sequence from clone RP11-1066D24 on chromosome X, complete sequence Length = 97771 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 21811 cagatatctcaccaaagaag 21792
>emb|AL589993.5| Human DNA sequence from clone RP11-57K17 on chromosome 6 Contains the 3' end of the gene for serologically defined breast cancer antigen NY-BR-15 (LOC221312) and a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 24 (DDX24) pseudogene, complete sequence Length = 96246 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 72235 cagatatctcaccaaagaag 72254
>emb|AL354775.12| Human DNA sequence from clone RP11-223F20 on chromosome 13 Contains a novel heterogeneous nuclear ribonucleoprotein family A protein and a novel gene, complete sequence Length = 168897 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 161542 cagatatctcaccaaagaag 161561
>emb|AL162725.10| Human DNA sequence from clone RP11-132E11 on chromosome 9 Contains a novel gene, the 5' end of a novel gene (FLJ25636), a ribosomal protein S29 (RPS29) pseudogene, a ribosomal protein L31 (RPL31) pseudogene and a CpG island, complete sequence Length = 143223 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagtcatgataccaattggt 127 |||||||||||||||||||| Sbjct: 28810 gagtcatgataccaattggt 28791
>emb|AL135932.7| Human DNA sequence from clone RP4-535H23 on chromosome 11p12-14.1 Contains STSs, complete sequence Length = 143321 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 140989 cagatatctcaccaaagaag 140970
>emb|AL133406.14| Human DNA sequence from clone RP3-355L5 on chromosome 6q16.3-21 Contains the 3' end of the PREP gene for prolyl endopeptidase, a ribosomal protein L7 (RPL7) pseudogene, a ribosomal protein L35 (RPL35) pseudogene and a putative novel gene (FLJ32396), complete sequence Length = 103421 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 55928 cagatatctcaccaaagaag 55909
>emb|AL049762.20|HSDJ81F6 Human DNA sequence from clone RP1-81F6 on chromosome 1q24.1-25.2 Contains the 5' end of the gene for HBxAg transactivated protein 2 (XTP2), complete sequence Length = 100575 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 58859 cagatatctcaccaaagaag 58878
>emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segment 4/7 Length = 345997 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 caccaaccattcggtgcagc 53 |||||||||||||||||||| Sbjct: 96472 caccaaccattcggtgcagc 96491
>emb|BX647084.1|HSM807228 Homo sapiens mRNA; cDNA DKFZp686O14166 (from clone DKFZp686O14166) Length = 4918 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 4800 cagatatctcaccaaagaag 4781
>gb|AC100767.2| Homo sapiens chromosome 11, clone RP11-787P24, complete sequence Length = 170435 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 146474 cagatatctcaccaaagaag 146455
>gb|AC073492.18| Homo sapiens Xp BAC RP11-460J19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155567 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gagtcatgataccaattggt 127 |||||||||||||||||||| Sbjct: 87380 gagtcatgataccaattggt 87361
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.6 Identities = 39/46 (84%) Strand = Plus / Minus Query: 195 gtgtccgggctgaangacatnccagatatctcaccaaagaagtcca 240 ||||| || ||||| || || ||||| |||||||||||||| |||| Sbjct: 24571592 gtgtcgggactgaacgaaatgccagaaatctcaccaaagaaatcca 24571547 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 caccaaagaagtccagctct 245 |||||||||||||||||||| Sbjct: 23204186 caccaaagaagtccagctct 23204205 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 caccaaagaagtccagctct 245 |||||||||||||||||||| Sbjct: 19180264 caccaaagaagtccagctct 19180245
>gb|AC018717.11| Homo sapiens BAC clone RP11-505H14 from 2, complete sequence Length = 172639 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 32311 cagatatctcaccaaagaag 32330
>gb|AC108739.8| Homo sapiens 3 BAC RP11-481M14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96205 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 cagatatctcaccaaagaag 236 |||||||||||||||||||| Sbjct: 67536 cagatatctcaccaaagaag 67517
>dbj|AP004693.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461F06 Length = 147891 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 caccaaagaagtccagctct 245 |||||||||||||||||||| Sbjct: 127285 caccaaagaagtccagctct 127304
>dbj|AP004457.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0013B04 Length = 141319 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 caccaaagaagtccagctct 245 |||||||||||||||||||| Sbjct: 3537 caccaaagaagtccagctct 3556
>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026F07 Length = 137354 Score = 40.1 bits (20), Expect = 5.6 Identities = 39/46 (84%) Strand = Plus / Minus Query: 195 gtgtccgggctgaangacatnccagatatctcaccaaagaagtcca 240 ||||| || ||||| || || ||||| |||||||||||||| |||| Sbjct: 79852 gtgtcgggactgaacgaaatgccagaaatctcaccaaagaaatcca 79807
>dbj|AK121435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140A17, full insert sequence Length = 1924 Score = 40.1 bits (20), Expect = 5.6 Identities = 39/46 (84%) Strand = Plus / Minus Query: 195 gtgtccgggctgaangacatnccagatatctcaccaaagaagtcca 240 ||||| || ||||| || || ||||| |||||||||||||| |||| Sbjct: 1402 gtgtcgggactgaacgaaatgccagaaatctcaccaaagaaatcca 1357
>dbj|AK112033.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C09, full insert sequence Length = 1716 Score = 40.1 bits (20), Expect = 5.6 Identities = 39/46 (84%) Strand = Plus / Minus Query: 195 gtgtccgggctgaangacatnccagatatctcaccaaagaagtcca 240 ||||| || ||||| || || ||||| |||||||||||||| |||| Sbjct: 1391 gtgtcgggactgaacgaaatgccagaaatctcaccaaagaaatcca 1346
>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04 Length = 163579 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 caccaaagaagtccagctct 245 |||||||||||||||||||| Sbjct: 102629 caccaaagaagtccagctct 102610 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,166,042 Number of Sequences: 3902068 Number of extensions: 2166042 Number of successful extensions: 33758 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33628 Number of HSP's gapped (non-prelim): 118 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)