ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23e08 |
|---|---|
| Clone Library Name | barley_pub |
>IF3_STAAW (P65141) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 0.92 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -1 Query: 527 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 366 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 365 LISNGNPAGPFKISDVEREQMLELRDTVLRI 273 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAS (Q6G8P5) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 0.92 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -1 Query: 527 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 366 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 365 LISNGNPAGPFKISDVEREQMLELRDTVLRI 273 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAN (P65140) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 0.92 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -1 Query: 527 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 366 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 365 LISNGNPAGPFKISDVEREQMLELRDTVLRI 273 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAM (P65139) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 0.92 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -1 Query: 527 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 366 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 365 LISNGNPAGPFKISDVEREQMLELRDTVLRI 273 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAC (Q5HF92) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 0.92 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -1 Query: 527 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 366 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 365 LISNGNPAGPFKISDVEREQMLELRDTVLRI 273 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAES (Q8CS75) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -1 Query: 527 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 366 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINEKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 365 LISNGNPAGPFKISDVEREQMLELRDTVLRI 273 ++ G +K ++E+ ++ + V+ + Sbjct: 59 PVARIMDYGKYKFEQQKKEKEMKKKQKVINV 89
>IF3_STAEQ (Q5HNM3) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 1.2 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -1 Query: 527 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 366 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINEKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 365 LISNGNPAGPFKISDVEREQMLELRDTVLRI 273 ++ G +K ++E+ ++ + V+ + Sbjct: 59 PVARIMDYGKYKFEQQKKEKEMKKKQKVINV 89
>PYRG_CORGL (Q8NQL7) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 554 Score = 31.6 bits (70), Expect = 1.6 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 257 SSDTFDPSLLQPIVQVLQEREARVFGSRIAGG 162 SS FDP+ QP++ ++E++A V G GG Sbjct: 414 SSTEFDPAATQPVIATMEEQKAAVSGEADLGG 445
>KCND1_HUMAN (Q9NSA2) Potassium voltage-gated channel subfamily D member 1| (Voltage-gated potassium channel subunit Kv4.1) Length = 647 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/34 (52%), Positives = 21/34 (61%) Frame = +1 Query: 103 GAGGILSSCCNKRAARRWETPPAIREPNTRASRS 204 G G +LSSCC +RA RR AIR N+ AS S Sbjct: 524 GPGSLLSSCCPRRAKRR-----AIRLANSTASVS 552
>TRMD_MYCPU (Q98Q98) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 225 Score = 31.2 bits (69), Expect = 2.0 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 1/107 (0%) Frame = -1 Query: 500 LKLLLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISD 321 LK+L+ P G+ + KE V+ ITF + G Y E + I G + ++ Sbjct: 78 LKILVSPQGKLFNQEIAKEIVKNHSEITF--VSGRYEGFDERILNYIDIELSIGDYILTG 135 Query: 320 VEREQMLELRDTVLRIW-GLLRSSDTFDPSLLQPIVQVLQEREARVF 183 E M+ + D+++R+W +++ + S ++ Q RVF Sbjct: 136 GELPSMV-MADSIIRLWEDVIKKESYENESFENNLLDYPQYTRPRVF 181
>IF3_THET2 (Q9ACJ8) Translation initiation factor IF-3| Length = 171 Score = 30.4 bits (67), Expect = 3.5 Identities = 12/52 (23%), Positives = 30/52 (57%) Frame = -1 Query: 536 REFVAKDALQPVLKLLLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAP 381 +E++ + ++ ++GPDG+ L ++ +EA+R+ + + ++ NA P Sbjct: 2 KEYLTNERIRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADP 53
>GLMS_IDILO (Q5QZH5) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 609 Score = 30.0 bits (66), Expect = 4.5 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +2 Query: 161 HLLRYENQTHGLHALVAPVQLAAKDLDQRYQRISKDPIF*EQCLVAPTFVP 313 HL+ +E +THG L+A V+ A + L+ Y + D + E+ +VA + P Sbjct: 130 HLIHHERKTHG--DLLAAVKSAVRQLEGAYGTVVMDTQYPERLVVARSGSP 178
>RNF39_MACMU (Q5TM52) RING finger protein 39| Length = 420 Score = 30.0 bits (66), Expect = 4.5 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +1 Query: 124 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 234 S C ARRW TPPA +T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TDTEASPTACPCCGLPCPR 140
>IF3_ENTFA (Q837C9) Translation initiation factor IF-3| Length = 173 Score = 29.6 bits (65), Expect = 5.9 Identities = 22/99 (22%), Positives = 45/99 (45%) Frame = -1 Query: 536 REFVAKDALQPVLKLLLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLIS 357 ++ + D ++ L+G DGE L V EA+++ E+ ++ + A KP ++ Sbjct: 5 KDMMVNDGIRARELRLIGQDGEQLGVKTKAEALQIAESANLDLVLVAPGA-----KPPVA 59 Query: 356 NGNPAGPFKISDVEREQMLELRDTVLRIWGLLRSSDTFD 240 G F+ ++E+ + V+ + +R S T D Sbjct: 60 RIMDYGKFRFEQQKKEREARKKQKVINV-KEVRLSPTID 97
>RNF39_PANTR (Q7YR31) RING finger protein 39 (Protein HZFw)| Length = 420 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +1 Query: 124 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 234 S C ARRW TPPA T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TGTEASPTACPCCGLPCPR 140
>RNF39_HUMAN (Q9H2S5) RING finger protein 39 (Protein HZFw)| Length = 420 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +1 Query: 124 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 234 S C ARRW TPPA T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TGTEASPTACPCCGLPCPR 140
>AMY4_SCHPO (Q9Y7S9) Probable alpha-amylase C63.02c precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 564 Score = 29.3 bits (64), Expect = 7.8 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +1 Query: 346 GFPLDINGF-KNSGAALYEPISVPKVMASVTRTASFTTSTLKFSPSGPSRSFKTGCSASF 522 G+PL + K SG L P VM S + TA+ T T +SPS +RSF TG + F Sbjct: 478 GYPLIMYPHSKMSGFTL--PTVNRTVMPSTSATATTTVYTSYYSPSYSARSF-TGTGSIF 534 Query: 523 ATNSLS 540 +S S Sbjct: 535 TISSSS 540 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,502,389 Number of Sequences: 219361 Number of extensions: 1791443 Number of successful extensions: 5333 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5150 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5333 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
