ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23e08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033049N14, full insert sequence Length = 1780 Score = 230 bits (116), Expect = 4e-57 Identities = 347/424 (81%) Strand = Plus / Minus Query: 121 agcagctgttgcaacaagcgagctgcaaggcgctgggagacacctcctgcgatacgagaa 180 |||||||| ||||||| ||| || || |||||||| | ||||||||||| | || || Sbjct: 1556 agcagctgctgcaacaggcgggccgcgaggcgctgcgtaacacctcctgcaacccgggag 1497 Query: 181 ccaaacacacgggcttcacgctcttgtagcacctgtacaattggctgcaaaagacttgga 240 |||| || ||||| || |||||||||||||||| |||||||| ||||| | |||| Sbjct: 1496 ccaagaacgcgggcctctggctcttgtagcacctgcacaattggttgcaagatggttggg 1437 Query: 241 tcaaaggtatcagaggatctcaaaagaccccatattctgagaacagtgtctcgtagctcc 300 |||||| ||| |||||||||| ||| ||||||||||||| ||| |||| || ||||| Sbjct: 1436 tcaaagccatccgaggatctcagaaggccccatattctgaaaaccctgtcccgcagctca 1377 Query: 301 aacatttgttcccgctcaacatcacttatcttaaagggtccagctgggtttccattggat 360 | ||||||||||| ||| || |||||||| || ||||| ||||| || ||| ||||| Sbjct: 1376 atcatttgttccctttcagtgtcgcttatcttgaacggtccggctggattaccactggat 1317 Query: 361 attaatggcttcaaaaattctggagctgcattgtatgaaccaatcagtgttccaaaggtg 420 |||||||| || | |||||||||||||||||| || ||| ||||||| |||||||| ||| Sbjct: 1316 attaatggtttaagaaattctggagctgcattatacgaatcaatcagcgttccaaaagtg 1257 Query: 421 atggcttctgtgacacgaaccgcttctttcacaacaagcacccttaaattctccccatct 480 ||||||||||||||||||||||||||||||||||| || || | || | ||||||||| Sbjct: 1256 atggcttctgtgacacgaaccgcttctttcacaactaggactcgcaattcctccccatca 1197 Query: 481 ggaccaagtagaagtttcaaaaccggttgtagcgcatccttcgctacaaactctctatcc 540 |||||||||||||| || | ||| ||||| | ||||| || ||| ||||||||||||| Sbjct: 1196 ggaccaagtagaagctttagaactggttgcaaagcatcttttgctgcaaactctctatct 1137 Query: 541 tggc 544 |||| Sbjct: 1136 tggc 1133 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 gaaagtatcgtgtgaatttacatg 55 ||||||| |||||||||||||||| Sbjct: 1620 gaaagtaccgtgtgaatttacatg 1597
>dbj|AK059093.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C02, full insert sequence Length = 1302 Score = 230 bits (116), Expect = 4e-57 Identities = 347/424 (81%) Strand = Plus / Minus Query: 121 agcagctgttgcaacaagcgagctgcaaggcgctgggagacacctcctgcgatacgagaa 180 |||||||| ||||||| ||| || || |||||||| | ||||||||||| | || || Sbjct: 1173 agcagctgctgcaacaggcgggccgcgaggcgctgcgtaacacctcctgcaacccgggag 1114 Query: 181 ccaaacacacgggcttcacgctcttgtagcacctgtacaattggctgcaaaagacttgga 240 |||| || ||||| || |||||||||||||||| |||||||| ||||| | |||| Sbjct: 1113 ccaagaacgcgggcctctggctcttgtagcacctgcacaattggttgcaagatggttggg 1054 Query: 241 tcaaaggtatcagaggatctcaaaagaccccatattctgagaacagtgtctcgtagctcc 300 |||||| ||| |||||||||| ||| ||||||||||||| ||| |||| || ||||| Sbjct: 1053 tcaaagccatccgaggatctcagaaggccccatattctgaaaaccctgtcccgcagctca 994 Query: 301 aacatttgttcccgctcaacatcacttatcttaaagggtccagctgggtttccattggat 360 | ||||||||||| ||| || |||||||| || ||||| ||||| || ||| ||||| Sbjct: 993 atcatttgttccctttcagtgtcgcttatcttgaacggtccggctggattaccactggat 934 Query: 361 attaatggcttcaaaaattctggagctgcattgtatgaaccaatcagtgttccaaaggtg 420 |||||||| || | |||||||||||||||||| || ||| ||||||| |||||||| ||| Sbjct: 933 attaatggtttaagaaattctggagctgcattatacgaatcaatcagcgttccaaaagtg 874 Query: 421 atggcttctgtgacacgaaccgcttctttcacaacaagcacccttaaattctccccatct 480 ||||||||||||||||||||||||||||||||||| || || | || | ||||||||| Sbjct: 873 atggcttctgtgacacgaaccgcttctttcacaactaggactcgcaattcctccccatca 814 Query: 481 ggaccaagtagaagtttcaaaaccggttgtagcgcatccttcgctacaaactctctatcc 540 |||||||||||||| || | ||| ||||| | ||||| || ||| ||||||||||||| Sbjct: 813 ggaccaagtagaagctttagaactggttgcaaagcatcttttgctgcaaactctctatct 754 Query: 541 tggc 544 |||| Sbjct: 753 tggc 750 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 gaaagtatcgtgtgaatttacatg 55 ||||||| |||||||||||||||| Sbjct: 1237 gaaagtaccgtgtgaatttacatg 1214
>gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03, complete sequence Length = 146278 Score = 202 bits (102), Expect = 9e-49 Identities = 276/334 (82%) Strand = Plus / Minus Query: 211 acctgtacaattggctgcaaaagacttggatcaaaggtatcagaggatctcaaaagaccc 270 ||||| |||||||| ||||| | |||| |||||| ||| |||||||||| ||| ||| Sbjct: 61803 acctgcacaattggttgcaagatggttgggtcaaagccatccgaggatctcagaaggccc 61744 Query: 271 catattctgagaacagtgtctcgtagctccaacatttgttcccgctcaacatcacttatc 330 |||||||||| ||| |||| || ||||| | ||||||||||| ||| || |||||| Sbjct: 61743 catattctgaaaaccctgtcccgcagctcaatcatttgttccctttcagtgtcgcttatc 61684 Query: 331 ttaaagggtccagctgggtttccattggatattaatggcttcaaaaattctggagctgca 390 || || ||||| ||||| || ||| ||||||||||||| || | |||||||||||||||| Sbjct: 61683 ttgaacggtccggctggattaccactggatattaatggtttaagaaattctggagctgca 61624 Query: 391 ttgtatgaaccaatcagtgttccaaaggtgatggcttctgtgacacgaaccgcttctttc 450 || || ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 61623 ttatacgaatcaatcagcgttccaaaagtgatggcttctgtgacacgaaccgcttctttc 61564 Query: 451 acaacaagcacccttaaattctccccatctggaccaagtagaagtttcaaaaccggttgt 510 ||||| || || | || | ||||||||| |||||||||||||| || | ||| ||||| Sbjct: 61563 acaactaggactcgcaattcctccccatcaggaccaagtagaagctttagaactggttgc 61504 Query: 511 agcgcatccttcgctacaaactctctatcctggc 544 | ||||| || ||| ||||||||||||| |||| Sbjct: 61503 aaagcatcttttgctgcaaactctctatcttggc 61470 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 gaaagtatcgtgtgaatttacatg 55 ||||||| |||||||||||||||| Sbjct: 62059 gaaagtaccgtgtgaatttacatg 62036
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 202 bits (102), Expect = 9e-49 Identities = 276/334 (82%) Strand = Plus / Minus Query: 211 acctgtacaattggctgcaaaagacttggatcaaaggtatcagaggatctcaaaagaccc 270 ||||| |||||||| ||||| | |||| |||||| ||| |||||||||| ||| ||| Sbjct: 14910887 acctgcacaattggttgcaagatggttgggtcaaagccatccgaggatctcagaaggccc 14910828 Query: 271 catattctgagaacagtgtctcgtagctccaacatttgttcccgctcaacatcacttatc 330 |||||||||| ||| |||| || ||||| | ||||||||||| ||| || |||||| Sbjct: 14910827 catattctgaaaaccctgtcccgcagctcaatcatttgttccctttcagtgtcgcttatc 14910768 Query: 331 ttaaagggtccagctgggtttccattggatattaatggcttcaaaaattctggagctgca 390 || || ||||| ||||| || ||| ||||||||||||| || | |||||||||||||||| Sbjct: 14910767 ttgaacggtccggctggattaccactggatattaatggtttaagaaattctggagctgca 14910708 Query: 391 ttgtatgaaccaatcagtgttccaaaggtgatggcttctgtgacacgaaccgcttctttc 450 || || ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 14910707 ttatacgaatcaatcagcgttccaaaagtgatggcttctgtgacacgaaccgcttctttc 14910648 Query: 451 acaacaagcacccttaaattctccccatctggaccaagtagaagtttcaaaaccggttgt 510 ||||| || || | || | ||||||||| |||||||||||||| || | ||| ||||| Sbjct: 14910647 acaactaggactcgcaattcctccccatcaggaccaagtagaagctttagaactggttgc 14910588 Query: 511 agcgcatccttcgctacaaactctctatcctggc 544 | ||||| || ||| ||||||||||||| |||| Sbjct: 14910587 aaagcatcttttgctgcaaactctctatcttggc 14910554 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 gaaagtatcgtgtgaatttacatg 55 ||||||| |||||||||||||||| Sbjct: 14911143 gaaagtaccgtgtgaatttacatg 14911120
>gb|AC153022.1| Mus musculus 6 BAC RP23-115M13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201949 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 402 aatcagtgttccaaaggtgatg 423 |||||||||||||||||||||| Sbjct: 102478 aatcagtgttccaaaggtgatg 102499
>gb|AC007916.10| Homo sapiens 12 BAC RP11-103D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121500 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 442 gcttctttcacaacaagcacc 462 ||||||||||||||||||||| Sbjct: 28669 gcttctttcacaacaagcacc 28649
>gb|AC155913.5| Mus musculus 6 BAC RP24-402E22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162332 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ttgcttttactttttcctttt 25 ||||||||||||||||||||| Sbjct: 59399 ttgcttttactttttcctttt 59419
>gb|AC100406.7| Mus musculus chromosome 9, clone RP23-134M7, complete sequence Length = 183837 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 gatctcaaaagaccccatatt 276 ||||||||||||||||||||| Sbjct: 151059 gatctcaaaagaccccatatt 151039
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 atagttgcttttactttttcctttt 25 |||||||||||||||||||| |||| Sbjct: 2173154 atagttgcttttactttttcatttt 2173178
>gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, complete sequence Length = 193376 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 gcacctgtacaattggctgcaaaa 232 |||||||||| ||||||||||||| Sbjct: 55705 gcacctgtacgattggctgcaaaa 55682
>ref|XM_476448.1| Oryza sativa (japonica cultivar-group), mRNA Length = 987 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 atcctgagcagctgttgcaa 134 |||||||||||||||||||| Sbjct: 884 atcctgagcagctgttgcaa 865
>gb|AC124323.10| Mus musculus chromosome 19, clone RP24-444B6, complete sequence Length = 150803 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 atagttgcttttactttttccttt 24 ||||||||||||||| |||||||| Sbjct: 35765 atagttgcttttactctttccttt 35742
>gb|AC162887.5| Mus musculus chromosome 19, clone RP23-414O6, complete sequence Length = 190704 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tgcttttactttttcctttt 25 |||||||||||||||||||| Sbjct: 125794 tgcttttactttttcctttt 125775
>gb|AC122317.4| Mus musculus BAC clone RP23-304C21 from 12, complete sequence Length = 173567 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 caggaacaggtgcaggtggg 114 |||||||||||||||||||| Sbjct: 100887 caggaacaggtgcaggtggg 100868
>gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 153084 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 taagaagatccaggaacagg 104 |||||||||||||||||||| Sbjct: 113835 taagaagatccaggaacagg 113816
>emb|AL592466.9| Human DNA sequence from clone RP11-428G2 on chromosome 10 Contains a novel gene, complete sequence Length = 113271 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 atttacatggtttagtgtga 66 |||||||||||||||||||| Sbjct: 21207 atttacatggtttagtgtga 21226
>emb|AL390838.26| Human DNA sequence from clone RP11-158D2 on chromosome 9 Contains a novel pseudogene and a novel gene, complete sequence Length = 193709 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 ttaatggcttcaaaaattct 381 |||||||||||||||||||| Sbjct: 118899 ttaatggcttcaaaaattct 118918
>emb|CR405705.11| Zebrafish DNA sequence from clone DKEY-64E13 in linkage group 17, complete sequence Length = 155058 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tactttttccttttggtgca 31 |||||||||||||||||||| Sbjct: 81035 tactttttccttttggtgca 81054
>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the 5' end of the gene for a novel protein (330000P08Rik) (Luc7a), the gene for a novel protein (5530600A18Rik), the Abcc3 gene for ATP-binding cassette sub-family C (CFTR/MRP) member 3, the Cacna1g gene for calcium channel voltage-dependent T type alpha 1G subunit, the 3' end of the Tisp78 gene for transcript increased in spermiogenesis 78 and one CpG island, complete sequence Length = 161978 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 ttactttttccttttggtgc 30 |||||||||||||||||||| Sbjct: 30049 ttactttttccttttggtgc 30030
>emb|AL672072.18| Zebrafish DNA sequence from clone BUSM1-55H21 Contains a CpG island, complete sequence Length = 100697 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tactttttccttttggtgca 31 |||||||||||||||||||| Sbjct: 49374 tactttttccttttggtgca 49393
>emb|BX005003.10| Zebrafish DNA sequence from clone DKEY-241F8 in linkage group 13, complete sequence Length = 172889 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 taatggcttcaaaaattctg 382 |||||||||||||||||||| Sbjct: 165852 taatggcttcaaaaattctg 165833
>emb|BX005068.13| Zebrafish DNA sequence from clone DKEY-40H17 in linkage group 1, complete sequence Length = 215007 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cttcaaaaattctggagctg 388 |||||||||||||||||||| Sbjct: 11459 cttcaaaaattctggagctg 11440
>gb|AC099783.2| Homo sapiens chromosome 3 clone RP11-115I24, complete sequence Length = 159870 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tctaagaagatccaggaaca 102 |||||||||||||||||||| Sbjct: 101021 tctaagaagatccaggaaca 101002
>gb|AC099058.2| Homo sapiens chromosome 3 clone RP11-714G12, complete sequence Length = 196623 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 aatttacatggtttagtgtg 65 |||||||||||||||||||| Sbjct: 42827 aatttacatggtttagtgtg 42808
>gb|AC025155.20| Homo sapiens 3 BAC RP11-487M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 40307 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aaaaattctggagctgcattgtat 396 |||||||||| ||||||||||||| Sbjct: 377 aaaaattctgcagctgcattgtat 354
>gb|AC158130.7| Mus musculus chromosome 19, clone RP24-360F11, complete sequence Length = 206879 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 atagttgcttttactttttccttt 24 ||||||||||||||| |||||||| Sbjct: 174205 atagttgcttttactctttccttt 174182
>gb|AC023906.7|AC023906 Homo sapiens chromosome 15 clone CTD-2184D3 map 15q21.2, complete sequence Length = 93287 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 ggaacaggtgcaggtgggat 116 |||||||||||||||||||| Sbjct: 65115 ggaacaggtgcaggtgggat 65096
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gatacgagaaccaaacacac 190 |||||||||||||||||||| Sbjct: 18397082 gatacgagaaccaaacacac 18397101
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 cttttactttttccttttgg 27 |||||||||||||||||||| Sbjct: 16950313 cttttactttttccttttgg 16950294
>gb|AC159114.7| Mus musculus BAC RP23-370L19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 169393 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 taagaagatccaggaacagg 104 |||||||||||||||||||| Sbjct: 101227 taagaagatccaggaacagg 101246
>gb|AC069410.10| Homo sapiens 3 BAC RP11-32M21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176924 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 aaaaattctggagctgcattgtat 396 |||||||||| ||||||||||||| Sbjct: 148675 aaaaattctgcagctgcattgtat 148652
>emb|BX284612.22| Mouse DNA sequence from clone RP23-332H17 on chromosome 2, complete sequence Length = 132718 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 aatggcttcaaaaattctgg 383 |||||||||||||||||||| Sbjct: 83243 aatggcttcaaaaattctgg 83262
>emb|BX005473.5| Zebrafish DNA sequence from clone DKEY-148P7 in linkage group 1, complete sequence Length = 94966 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 cttcaaaaattctggagctg 388 |||||||||||||||||||| Sbjct: 57883 cttcaaaaattctggagctg 57902
>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1484_G09 Length = 124695 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 cttttactttttccttttgg 27 |||||||||||||||||||| Sbjct: 97324 cttttactttttccttttgg 97305
>emb|AL672171.8| Zebrafish DNA sequence from clone BUSM1-270G24 in linkage group 3 Contains a CpG island, complete sequence Length = 114103 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tactttttccttttggtgca 31 |||||||||||||||||||| Sbjct: 50840 tactttttccttttggtgca 50859
>dbj|AP004106.1| Nansenia ardesiaca mitochondrial DNA, complete genome Length = 16620 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ctcaacatcacttatcttaa 334 |||||||||||||||||||| Sbjct: 11958 ctcaacatcacttatcttaa 11977
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gatacgagaaccaaacacac 190 |||||||||||||||||||| Sbjct: 18323308 gatacgagaaccaaacacac 18323327
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138585 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gatacgagaaccaaacacac 190 |||||||||||||||||||| Sbjct: 48981 gatacgagaaccaaacacac 49000
>gb|AY066707.1| Schmidtea mediterranea clone HB.21.1a unknown mRNA sequence Length = 683 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 agaagatccaggaacaggtg 106 |||||||||||||||||||| Sbjct: 128 agaagatccaggaacaggtg 147
>gb|AC107050.3| Homo sapiens BAC clone RP11-182A9 from 4, complete sequence Length = 167699 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 acaagcacccttaaattctc 473 |||||||||||||||||||| Sbjct: 122382 acaagcacccttaaattctc 122401
>gb|AC135321.2| Homo sapiens chromosome 3 clone RP11-733F11, complete sequence Length = 177164 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tctaagaagatccaggaaca 102 |||||||||||||||||||| Sbjct: 7493 tctaagaagatccaggaaca 7512 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,014,543 Number of Sequences: 3902068 Number of extensions: 5014543 Number of successful extensions: 97599 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97316 Number of HSP's gapped (non-prelim): 271 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
