ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23d24 |
|---|---|
| Clone Library Name | barley_pub |
>OXAA_CAUCR (Q9AA40) Inner membrane protein oxaA| Length = 615 Score = 32.0 bits (71), Expect = 1.8 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 501 PSSRSLWTVAPGTILRANS 557 P SR++WT APG +LR NS Sbjct: 143 PDSRTVWTAAPGQVLRPNS 161
>MTFR1_HUMAN (Q15390) Mitochondrial fission regulator 1 (Chondrocyte protein| with a poly-proline region) Length = 333 Score = 30.4 bits (67), Expect = 5.1 Identities = 15/35 (42%), Positives = 16/35 (45%) Frame = +3 Query: 78 TIGAAAPHPDPRDPELPFILDALLSPPTIGQHLST 182 T G PHP P P LP PP +G H ST Sbjct: 179 TFGTIPPHPPPPPPPLP--------PPALGLHQST 205
>HCN1_HUMAN (O60741) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 1 (Brain cyclic nucleotide gated channel 1) (BCNG-1) Length = 890 Score = 30.0 bits (66), Expect = 6.7 Identities = 42/194 (21%), Positives = 62/194 (31%), Gaps = 9/194 (4%) Frame = +1 Query: 43 LSXTSVHYTEPAQSV-----QQPPIQTPETQSFLLYSTLCSVHQLSVSICPPAARKEKPI 207 L+ + HY P S QQP Q ++Q PP + ++P Sbjct: 712 LAARTFHYASPTASQLSLMQQQPQQQVQQSQ-------------------PPQTQPQQPS 752 Query: 208 FSVRSVCVEVPSNVVLYSCIYTHDPDAEHDIRPGLMF----PAPVXXXXXXXXXMQGLFL 375 ++ P N V S H+ + ++RP + P V G L Sbjct: 753 PQPQTPGSSTPKNEVHKSTQALHNTNLTREVRPFSAWQPSLPHEVSTLISRPHPTVGESL 812 Query: 376 PSVPGPLHWVPVQGLEGPAGCQTGWRISAGGTHXXXXXXXXXXXXEACGRWLLEPSSGQI 555 S+P P+ VP GL+ R++ + SSG I Sbjct: 813 ASIPQPVTAVPGTGLQAGGRSTVPQRVTL----------------------FRQMSSGAI 850 Query: 556 RSPTGAPPDRPFPA 597 G PP P PA Sbjct: 851 PPNRGVPPAPPPPA 864
>SYT_STAAW (Q8NW68) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 645 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +1 Query: 25 VISCADLSXTSVHYTEPAQSVQQPPIQTPETQSFLLYSTLCSVHQLSVSICPPAARKEKP 204 V++ DL TS H+ + Q PP+Q ET+S +L C H + + P + +E P Sbjct: 297 VLANVDLYKTSGHW-DHYQEDMFPPMQLDETESMVLRPMNCP-HHMMIYANKPHSYRELP 354 Query: 205 I 207 I Sbjct: 355 I 355
>SYT_STAAS (Q6G8P3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 645 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +1 Query: 25 VISCADLSXTSVHYTEPAQSVQQPPIQTPETQSFLLYSTLCSVHQLSVSICPPAARKEKP 204 V++ DL TS H+ + Q PP+Q ET+S +L C H + + P + +E P Sbjct: 297 VLANVDLYKTSGHW-DHYQEDMFPPMQLDETESMVLRPMNCP-HHMMIYANKPHSYRELP 354 Query: 205 I 207 I Sbjct: 355 I 355
>SYT_STAAR (Q6GG23) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 645 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +1 Query: 25 VISCADLSXTSVHYTEPAQSVQQPPIQTPETQSFLLYSTLCSVHQLSVSICPPAARKEKP 204 V++ DL TS H+ + Q PP+Q ET+S +L C H + + P + +E P Sbjct: 297 VLANVDLYKTSGHW-DHYQEDMFPPMQLDETESMVLRPMNCP-HHMMIYANKPHSYRELP 354 Query: 205 I 207 I Sbjct: 355 I 355
>SYT_STAAN (P67585) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 645 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +1 Query: 25 VISCADLSXTSVHYTEPAQSVQQPPIQTPETQSFLLYSTLCSVHQLSVSICPPAARKEKP 204 V++ DL TS H+ + Q PP+Q ET+S +L C H + + P + +E P Sbjct: 297 VLANVDLYKTSGHW-DHYQEDMFPPMQLDETESMVLRPMNCP-HHMMIYANKPHSYRELP 354 Query: 205 I 207 I Sbjct: 355 I 355
>SYT_STAAM (P67584) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 645 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +1 Query: 25 VISCADLSXTSVHYTEPAQSVQQPPIQTPETQSFLLYSTLCSVHQLSVSICPPAARKEKP 204 V++ DL TS H+ + Q PP+Q ET+S +L C H + + P + +E P Sbjct: 297 VLANVDLYKTSGHW-DHYQEDMFPPMQLDETESMVLRPMNCP-HHMMIYANKPHSYRELP 354 Query: 205 I 207 I Sbjct: 355 I 355
>SYT_STAAC (Q5HF90) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 645 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +1 Query: 25 VISCADLSXTSVHYTEPAQSVQQPPIQTPETQSFLLYSTLCSVHQLSVSICPPAARKEKP 204 V++ DL TS H+ + Q PP+Q ET+S +L C H + + P + +E P Sbjct: 297 VLANVDLYKTSGHW-DHYQEDMFPPMQLDETESMVLRPMNCP-HHMMIYANKPHSYRELP 354 Query: 205 I 207 I Sbjct: 355 I 355
>6PGL_HAEIN (Q57039) 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL)| Length = 232 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Frame = -3 Query: 607 IHIWQGMDDRVVPPSATE----------FARRMVPGATVHKLL--DEGHFSYFCFCDECH 464 +H W G DDR+VPPS E F +P +H++ +E HF F +E Sbjct: 61 LHFWWG-DDRMVPPSDPESNYGEVQKLLFDHIQIPAENIHRIRGENEPHFELKRFEEELS 119 Query: 463 RQIFSTLF 440 I + +F Sbjct: 120 AVIPNGVF 127
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 29.6 bits (65), Expect = 8.7 Identities = 16/44 (36%), Positives = 17/44 (38%) Frame = -1 Query: 576 WCPRRRPNLPGGWFQEPPSTSFSTKATSRTSVSAMSATGRYSPP 445 W R PN GW +PP T V A A G Y PP Sbjct: 206 WGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPP 249 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,318,346 Number of Sequences: 219361 Number of extensions: 2268104 Number of successful extensions: 7213 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6704 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7210 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
