ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22o24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome... 252 8e-64
2gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome... 252 8e-64
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 252 8e-64
4dbj|AK100711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 8e-64
5dbj|AK060842.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 8e-64
6gb|AY106059.1| Zea mays PCO095932 mRNA sequence 220 3e-54
7ref|XM_483157.1| Oryza sativa (japonica cultivar-group), mRNA 94 4e-16
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
9dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
10dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
11dbj|AK102663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
12dbj|AP006368.1| Lotus japonicus genomic DNA, chromosome 2, clone... 54 4e-04
13ref|NM_117335.2| Arabidopsis thaliana transporter AT4G12650 mRNA... 46 0.091
14ref|XM_467531.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.091
15emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, ... 46 0.091
16emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BA... 46 0.091
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.091
18dbj|AK176134.1| Arabidopsis thaliana mRNA for putative protein, ... 46 0.091
19dbj|AK175992.1| Arabidopsis thaliana mRNA for putative protein, ... 46 0.091
20dbj|AK175697.1| Arabidopsis thaliana mRNA for putative protein, ... 46 0.091
21dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.091
22dbj|AK064958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.091
23emb|AL353581.14| Human DNA sequence from clone RP11-65L19 on chr... 42 1.4
24ref|XM_635257.1| Dictyostelium discoideum hypothetical protein (... 40 5.6
25ref|XM_510985.1| PREDICTED: Pan troglodytes LOC454110 (LOC454110... 40 5.6
26gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.6
27gb|AC116598.3| Mus musculus BAC clone RP24-419D22 from chromosom... 40 5.6
28gb|AC102613.7| Mus musculus chromosome 1, clone RP23-418C16, com... 40 5.6
29ref|XM_961844.1| PREDICTED: Tribolium castaneum similar to Proba... 40 5.6
30gb|AC105174.7| Mus musculus chromosome 5, clone RP24-230L5, comp... 40 5.6
31emb|CR380951.1| Candida glabrata strain CBS138 chromosome E comp... 40 5.6
32emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BA... 40 5.6
33emb|AL035475.7|PFMAL4P2 Plasmodium falciparum MAL4P2 40 5.6
34emb|BX640842.1|HSM806954 Homo sapiens mRNA; cDNA DKFZp686O13216 ... 40 5.6
35gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete ... 40 5.6
36gb|AC118062.4| Homo sapiens BAC clone RP11-637E17 from 4, comple... 40 5.6
37dbj|AK097030.1| Homo sapiens cDNA FLJ39711 fis, clone SMINT2013032 40 5.6
38gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, comple... 40 5.6
39gb|AC011979.7| Homo sapiens chromosome 11, clone RP11-16F15, com... 40 5.6
40dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
41gb|AF389420.1| Homo sapiens NOD27 (NOD27) mRNA, complete cds 40 5.6
42gb|AC023825.8| Homo sapiens chromosome 16 clone RP11-322D14, com... 40 5.6
43ref|NM_032206.2| Homo sapiens nucleotide-binding oligomerization... 40 5.6
44dbj|AK025362.1| Homo sapiens cDNA: FLJ21709 fis, clone COL10077 40 5.6
45emb|AJ277546.2|HSA277546 Homo sapiens WEE1 gene for protein kina... 40 5.6
46emb|BX897671.5| Zebrafish DNA sequence from clone CH211-214K5 in... 40 5.6
47gb|AY193643.1| Lactuca saligna clone LC13 resistance protein RGC... 40 5.6
48dbj|AK090439.1| Homo sapiens mRNA for FLJ00359 protein 40 5.6
49dbj|AK074182.1| Homo sapiens mRNA for FLJ00255 protein 40 5.6 
>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086E02,
              complete sequence
          Length = 150474

 Score =  252 bits (127), Expect = 8e-64
 Identities = 196/219 (89%)
 Strand = Plus / Plus

                                                                          
Query: 199    tctagtcaatcttaacagacgagaagaggtagtggacgaagtagaacgagagcaagaagc 258
              ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||
Sbjct: 124919 tctagtcaatcttaacagatgagaagaggtaatggacgaagtagaaggacagcaagaagc 124978

                                                                          
Query: 259    cgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtaga 318
              | || |||||||||||||||||||||||||  |||||||||||||| |||||||||||||
Sbjct: 124979 caatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtaga 125038

                                                                          
Query: 319    gcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggagt 378
              |||| || ||||| || || || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 125039 gcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgagt 125098

                                                     
Query: 379    ataggaagacgaagaaagcaacggagccagaagcaaaga 417
              ||||||||||| |||| || || || |||||||||||||
Sbjct: 125099 ataggaagacgtagaaggcgacagaaccagaagcaaaga 125137
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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
             complete sequence
          Length = 136713

 Score =  252 bits (127), Expect = 8e-64
 Identities = 196/219 (89%)
 Strand = Plus / Plus

                                                                         
Query: 199   tctagtcaatcttaacagacgagaagaggtagtggacgaagtagaacgagagcaagaagc 258
             ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||
Sbjct: 23086 tctagtcaatcttaacagatgagaagaggtaatggacgaagtagaaggacagcaagaagc 23145

                                                                         
Query: 259   cgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtaga 318
             | || |||||||||||||||||||||||||  |||||||||||||| |||||||||||||
Sbjct: 23146 caatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtaga 23205

                                                                         
Query: 319   gcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggagt 378
             |||| || ||||| || || || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 23206 gcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgagt 23265

                                                    
Query: 379   ataggaagacgaagaaagcaacggagccagaagcaaaga 417
             ||||||||||| |||| || || || |||||||||||||
Sbjct: 23266 ataggaagacgtagaaggcgacagaaccagaagcaaaga 23304
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  252 bits (127), Expect = 8e-64
 Identities = 196/219 (89%)
 Strand = Plus / Plus

                                                                           
Query: 199     tctagtcaatcttaacagacgagaagaggtagtggacgaagtagaacgagagcaagaagc 258
               ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||
Sbjct: 4047054 tctagtcaatcttaacagatgagaagaggtaatggacgaagtagaaggacagcaagaagc 4047113

                                                                           
Query: 259     cgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtaga 318
               | || |||||||||||||||||||||||||  |||||||||||||| |||||||||||||
Sbjct: 4047114 caatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtaga 4047173

                                                                           
Query: 319     gcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggagt 378
               |||| || ||||| || || || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 4047174 gcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgagt 4047233

                                                      
Query: 379     ataggaagacgaagaaagcaacggagccagaagcaaaga 417
               ||||||||||| |||| || || || |||||||||||||
Sbjct: 4047234 ataggaagacgtagaaggcgacagaaccagaagcaaaga 4047272
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>dbj|AK100711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H14, full
            insert sequence
          Length = 2407

 Score =  252 bits (127), Expect = 8e-64
 Identities = 196/219 (89%)
 Strand = Plus / Minus

                                                                        
Query: 199  tctagtcaatcttaacagacgagaagaggtagtggacgaagtagaacgagagcaagaagc 258
            ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||
Sbjct: 2087 tctagtcaatcttaacagatgagaagaggtaatggacgaagtagaaggacagcaagaagc 2028

                                                                        
Query: 259  cgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtaga 318
            | || |||||||||||||||||||||||||  |||||||||||||| |||||||||||||
Sbjct: 2027 caatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtaga 1968

                                                                        
Query: 319  gcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggagt 378
            |||| || ||||| || || || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 1967 gcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgagt 1908

                                                   
Query: 379  ataggaagacgaagaaagcaacggagccagaagcaaaga 417
            ||||||||||| |||| || || || |||||||||||||
Sbjct: 1907 ataggaagacgtagaaggcgacagaaccagaagcaaaga 1869
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>dbj|AK060842.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D06, full
           insert sequence
          Length = 1089

 Score =  252 bits (127), Expect = 8e-64
 Identities = 196/219 (89%)
 Strand = Plus / Minus

                                                                       
Query: 199 tctagtcaatcttaacagacgagaagaggtagtggacgaagtagaacgagagcaagaagc 258
           ||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||
Sbjct: 760 tctagtcaatcttaacagatgagaagaggtaatggacgaagtagaaggacagcaagaagc 701

                                                                       
Query: 259 cgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtaga 318
           | || |||||||||||||||||||||||||  |||||||||||||| |||||||||||||
Sbjct: 700 caatagcaccagtagacagcatgatggcaagggccatgatcagggaatagccaaggtaga 641

                                                                       
Query: 319 gcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggagt 378
           |||| || ||||| || || || |||||||| ||||||||||| ||||||||||| ||||
Sbjct: 640 gcgttgctgagaccggtccacttaggctcctaaggtcgaacacgaggtagttgattgagt 581

                                                  
Query: 379 ataggaagacgaagaaagcaacggagccagaagcaaaga 417
           ||||||||||| |||| || || || |||||||||||||
Sbjct: 580 ataggaagacgtagaaggcgacagaaccagaagcaaaga 542
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>gb|AY106059.1| Zea mays PCO095932 mRNA sequence
          Length = 1115

 Score =  220 bits (111), Expect = 3e-54
 Identities = 192/219 (87%)
 Strand = Plus / Minus

                                                                        
Query: 199  tctagtcaatcttaacagacgagaagaggtagtggacgaagtagaacgagagcaagaagc 258
            |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct: 1029 tctaatcaatcttaacagacgagaagaggtagtggacgaagtagaaggagagcaggaaac 970

                                                                        
Query: 259  cgatggcaccagtagacagcatgatggcaaatgccatgatcagggagtagccaaggtaga 318
            | ||||| ||||| || |||||||| ||||  |||||||||||||| |||||||||||||
Sbjct: 969  caatggcgccagtggagagcatgattgcaagggccatgatcagggaatagccaaggtaga 910

                                                                        
Query: 319  gcgtcgcggagactggcccgctcaggctcctgaggtcgaacaccaggtagttgatggagt 378
            | || || || ||||| ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct: 909  gtgtggcagaaactggtccgctcaggctcctgagatcgaacaccaggtagttaatagagt 850

                                                   
Query: 379  ataggaagacgaagaaagcaacggagccagaagcaaaga 417
            | ||||| ||  |||| || || ||||||||||||||||
Sbjct: 849  agaggaacacatagaatgcgacagagccagaagcaaaga 811
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>ref|XM_483157.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2616

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 95/111 (85%)
 Strand = Plus / Minus

                                                                        
Query: 275  cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 334
            ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 2064 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 2005

                                                               
Query: 335  cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 385
            |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 2004 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 1954
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                            
Query: 275      cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 334
                ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 24530996 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 24531055

                                                                   
Query: 335      cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 385
                |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 24531056 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 24531106
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>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0026F07
          Length = 137354

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                         
Query: 275   cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 334
             ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 39256 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 39315

                                                                
Query: 335   cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 385
             |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 39316 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 39366
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>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1142B04
          Length = 161964

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                          
Query: 275    cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 334
              ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 146712 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 146771

                                                                 
Query: 335    cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 385
              |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 146772 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 146822
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>dbj|AK102663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K01, full
            insert sequence
          Length = 2616

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 95/111 (85%)
 Strand = Plus / Minus

                                                                        
Query: 275  cagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagactgg 334
            ||||||||| |||||||||||||  |  ||||| |||||||| ||| | || ||||| ||
Sbjct: 2064 cagcatgattgcaaatgccatgaggaatgagtaaccaaggtaaagcatggcagagacagg 2005

                                                               
Query: 335  cccgctcaggctcctgaggtcgaacaccaggtagttgatggagtataggaa 385
            |||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct: 2004 cccgctcaggcttctgaggtcaaataccaagtagttgatggagtagaggaa 1954
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>dbj|AP006368.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT21K08, TM0191,
             complete sequence
          Length = 76693

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                         
Query: 351   aggtcgaacaccaggtagttgatggagtataggaagacgaagaaagcaacggagccagaa 410
             |||||||| |||| |||||| |||||||||| ||||||  | | |||||||||||| || 
Sbjct: 67912 aggtcgaaaaccaagtagttaatggagtataagaagacataaagagcaacggagcctgat 67971

                    
Query: 411   gcaaaga 417
             |||||||
Sbjct: 67972 gcaaaga 67978
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>ref|NM_117335.2| Arabidopsis thaliana transporter AT4G12650 mRNA, complete cds
          Length = 1813

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 104/131 (79%)
 Strand = Plus / Minus

                                                                        
Query: 213  acagacgagaagaggtagtggacgaagtagaacgagagcaagaagccgatggcaccagta 272
            ||||| || ||||| |||||||||||||| || |||   | |||||| ||||  ||||| 
Sbjct: 1571 acagaggaaaagagatagtggacgaagtaaaaggaggtgaggaagccaatggttccagtg 1512

                                                                        
Query: 273  gacagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagact 332
            |  |||||||| |||| |||||| | ||| |||||||||| ||| ||| | || ||||| 
Sbjct: 1511 gcgagcatgattgcaattgccataagcagagagtagccaatgtaaagcatagctgagacg 1452

                       
Query: 333  ggcccgctcag 343
            || ||||||||
Sbjct: 1451 ggtccgctcag 1441
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>ref|XM_467531.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2341

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 204  tcaatcttaacagacgagaagaggtagtggacgaa 238
            ||||||||||| || ||||| ||||||||||||||
Sbjct: 2141 tcaatcttaactgatgagaaaaggtagtggacgaa 2107
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>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
          Length = 196107

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 104/131 (79%)
 Strand = Plus / Plus

                                                                          
Query: 213    acagacgagaagaggtagtggacgaagtagaacgagagcaagaagccgatggcaccagta 272
              ||||| || ||||| |||||||||||||| || |||   | |||||| ||||  ||||| 
Sbjct: 140347 acagaggaaaagagatagtggacgaagtaaaaggaggtgaggaagccaatggttccagtg 140406

                                                                          
Query: 273    gacagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagact 332
              |  |||||||| |||| |||||| | ||| |||||||||| ||| ||| | || ||||| 
Sbjct: 140407 gcgagcatgattgcaattgccataagcagagagtagccaatgtaaagcatagctgagacg 140466

                         
Query: 333    ggcccgctcag 343
              || ||||||||
Sbjct: 140467 ggtccgctcag 140477
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>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project)
          Length = 137519

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 104/131 (79%)
 Strand = Plus / Plus

                                                                          
Query: 213    acagacgagaagaggtagtggacgaagtagaacgagagcaagaagccgatggcaccagta 272
              ||||| || ||||| |||||||||||||| || |||   | |||||| ||||  ||||| 
Sbjct: 135815 acagaggaaaagagatagtggacgaagtaaaaggaggtgaggaagccaatggttccagtg 135874

                                                                          
Query: 273    gacagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagact 332
              |  |||||||| |||| |||||| | ||| |||||||||| ||| ||| | || ||||| 
Sbjct: 135875 gcgagcatgattgcaattgccataagcagagagtagccaatgtaaagcatagctgagacg 135934

                         
Query: 333    ggcccgctcag 343
              || ||||||||
Sbjct: 135935 ggtccgctcag 135945
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 204      tcaatcttaacagacgagaagaggtagtggacgaa 238
                ||||||||||| || ||||| ||||||||||||||
Sbjct: 30005774 tcaatcttaactgatgagaaaaggtagtggacgaa 30005740
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>dbj|AK176134.1| Arabidopsis thaliana mRNA for putative protein, partial cds, clone:
           RAFL22-94-G13
          Length = 922

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 104/131 (79%)
 Strand = Plus / Minus

                                                                       
Query: 213 acagacgagaagaggtagtggacgaagtagaacgagagcaagaagccgatggcaccagta 272
           ||||| || ||||| |||||||||||||| || |||   | |||||| ||||  ||||| 
Sbjct: 671 acagaggaaaagagatagtggacgaagtaaaaggaggtgaggaagccaatggttccagtg 612

                                                                       
Query: 273 gacagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagact 332
           |  |||||||| |||| |||||| | ||| |||||||||| ||| ||| | || ||||| 
Sbjct: 611 gcgagcatgattgcaattgccataagcagagagtagccaatgtaaagcatagctgagacg 552

                      
Query: 333 ggcccgctcag 343
           || ||||||||
Sbjct: 551 ggtccgctcag 541
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>dbj|AK175992.1| Arabidopsis thaliana mRNA for putative protein, partial cds, clone:
           RAFL22-69-A01
          Length = 1126

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 104/131 (79%)
 Strand = Plus / Minus

                                                                       
Query: 213 acagacgagaagaggtagtggacgaagtagaacgagagcaagaagccgatggcaccagta 272
           ||||| || ||||| |||||||||||||| || |||   | |||||| ||||  ||||| 
Sbjct: 975 acagaggaaaagagatagtggacgaagtaaaaggaggtgaggaagccaatggttccagtg 916

                                                                       
Query: 273 gacagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagact 332
           |  |||||||| |||| |||||| | ||| |||||||||| ||| ||| | || ||||| 
Sbjct: 915 gcgagcatgattgcaattgccataagcagagagtagccaatgtaaagcatagctgagacg 856

                      
Query: 333 ggcccgctcag 343
           || ||||||||
Sbjct: 855 ggtccgctcag 845
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>dbj|AK175697.1| Arabidopsis thaliana mRNA for putative protein, partial cds, clone:
           RAFL22-22-N08
          Length = 922

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 104/131 (79%)
 Strand = Plus / Minus

                                                                       
Query: 213 acagacgagaagaggtagtggacgaagtagaacgagagcaagaagccgatggcaccagta 272
           ||||| || ||||| |||||||||||||| || |||   | |||||| ||||  ||||| 
Sbjct: 671 acagaggaaaagagatagtggacgaagtaaaaggaggtgaggaagccaatggttccagtg 612

                                                                       
Query: 273 gacagcatgatggcaaatgccatgatcagggagtagccaaggtagagcgtcgcggagact 332
           |  |||||||| |||| |||||| | ||| |||||||||| ||| ||| | || ||||| 
Sbjct: 611 gcgagcatgattgcaattgccataagcagagagtagccaatgtaaagcatagctgagacg 552

                      
Query: 333 ggcccgctcag 343
           || ||||||||
Sbjct: 551 ggtccgctcag 541
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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0654B04
          Length = 156907

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 204    tcaatcttaacagacgagaagaggtagtggacgaa 238
              ||||||||||| || ||||| ||||||||||||||
Sbjct: 106050 tcaatcttaactgatgagaaaaggtagtggacgaa 106016
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>dbj|AK064958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A11, full
            insert sequence
          Length = 2341

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 204  tcaatcttaacagacgagaagaggtagtggacgaa 238
            ||||||||||| || ||||| ||||||||||||||
Sbjct: 2141 tcaatcttaactgatgagaaaaggtagtggacgaa 2107
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>emb|AL353581.14| Human DNA sequence from clone RP11-65L19 on chromosome 13 Contains a
             heat shock 90kDa protein 1, beta (HSPCB) pseudogene, a
             novel gene and a tubby like protein 3 (TULP3) pseudogene,
             complete sequence
          Length = 148942

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   tttgacaattatttgtgtttg 144
             |||||||||||||||||||||
Sbjct: 74010 tttgacaattatttgtgtttg 73990
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>ref|XM_635257.1| Dictyostelium discoideum hypothetical protein (DDB0218367), partial
            mRNA
          Length = 2947

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  atttgtgtttgtgtttctaa 153
            ||||||||||||||||||||
Sbjct: 2535 atttgtgtttgtgtttctaa 2516
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>ref|XM_510985.1| PREDICTED: Pan troglodytes LOC454110 (LOC454110), mRNA
          Length = 6198

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 327  gagactggcccgctcaggctcctg 350
            |||||||||| |||||||||||||
Sbjct: 2319 gagactggccagctcaggctcctg 2296
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 312     aggtagagcgtcgcggagactggcccgc 339
               ||||||| ||||||| ||||||||||||
Sbjct: 2118371 aggtagatcgtcgcgaagactggcccgc 2118398
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>gb|AC116598.3| Mus musculus BAC clone RP24-419D22 from chromosome 5, complete sequence
          Length = 175438

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aaacatgtctaagaagtaaa 62
             ||||||||||||||||||||
Sbjct: 46198 aaacatgtctaagaagtaaa 46179
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>gb|AC102613.7| Mus musculus chromosome 1, clone RP23-418C16, complete sequence
          Length = 201275

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    ttatttgtgtttgtgtttct 151
              ||||||||||||||||||||
Sbjct: 147191 ttatttgtgtttgtgtttct 147172
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>ref|XM_961844.1| PREDICTED: Tribolium castaneum similar to Probable cytochrome P450
           12c1, mitochondrial precursor (CYPXIIC1) (LOC655316),
           mRNA
          Length = 1693

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  aaatcgccatatgttcccaa 115
           ||||||||||||||||||||
Sbjct: 222 aaatcgccatatgttcccaa 203
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>gb|AC105174.7| Mus musculus chromosome 5, clone RP24-230L5, complete sequence
          Length = 179947

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    aaacatgtctaagaagtaaa 62
             ||||||||||||||||||||
Sbjct: 71712 aaacatgtctaagaagtaaa 71731
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>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence
          Length = 687501

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 103    catatgttcccaatttttcagttt 126
              ||||| ||||||||||||||||||
Sbjct: 339749 catattttcccaatttttcagttt 339726
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>emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24I3
          Length = 91303

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   aattatttgtgtttgtgttt 149
             ||||||||||||||||||||
Sbjct: 35868 aattatttgtgtttgtgttt 35849
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>emb|AL035475.7|PFMAL4P2 Plasmodium falciparum MAL4P2
          Length = 234081

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    aattatttgtgtttgtgttt 149
              ||||||||||||||||||||
Sbjct: 140382 aattatttgtgtttgtgttt 140401
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>emb|BX640842.1|HSM806954 Homo sapiens mRNA; cDNA DKFZp686O13216 (from clone DKFZp686O13216)
          Length = 2811

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 327 gagactggcccgctcaggctcctg 350
           |||||||||| |||||||||||||
Sbjct: 552 gagactggccagctcaggctcctg 529
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>gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete sequence
          Length = 124152

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 135   tttgtgtttgtgtttctaaggata 158
             ||||||||| ||||||||||||||
Sbjct: 64371 tttgtgtttttgtttctaaggata 64348
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>gb|AC118062.4| Homo sapiens BAC clone RP11-637E17 from 4, complete sequence
          Length = 107609

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    taaagctggagtaactgtgc 85
             ||||||||||||||||||||
Sbjct: 96610 taaagctggagtaactgtgc 96591
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>dbj|AK097030.1| Homo sapiens cDNA FLJ39711 fis, clone SMINT2013032
          Length = 2712

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 327  gagactggcccgctcaggctcctg 350
            |||||||||| |||||||||||||
Sbjct: 2067 gagactggccagctcaggctcctg 2044
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>gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, complete sequence
          Length = 121016

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   gttcccaatttttcagtttg 127
             ||||||||||||||||||||
Sbjct: 35001 gttcccaatttttcagtttg 35020
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>gb|AC011979.7| Homo sapiens chromosome 11, clone RP11-16F15, complete sequence
          Length = 154995

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tttcagtttgacaattattt 137
             ||||||||||||||||||||
Sbjct: 92923 tttcagtttgacaattattt 92904
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 223      agaggtagtggacgaagtag 242
                ||||||||||||||||||||
Sbjct: 18844365 agaggtagtggacgaagtag 18844346
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>gb|AF389420.1| Homo sapiens NOD27 (NOD27) mRNA, complete cds
          Length = 5601

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 327  gagactggcccgctcaggctcctg 350
            |||||||||| |||||||||||||
Sbjct: 1890 gagactggccagctcaggctcctg 1867
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>gb|AC023825.8| Homo sapiens chromosome 16 clone RP11-322D14, complete sequence
          Length = 217521

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 327    gagactggcccgctcaggctcctg 350
              |||||||||| |||||||||||||
Sbjct: 152377 gagactggccagctcaggctcctg 152400
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>ref|NM_032206.2| Homo sapiens nucleotide-binding oligomerization domains 27 (NOD27),
            mRNA
          Length = 5601

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 327  gagactggcccgctcaggctcctg 350
            |||||||||| |||||||||||||
Sbjct: 1890 gagactggccagctcaggctcctg 1867
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>dbj|AK025362.1| Homo sapiens cDNA: FLJ21709 fis, clone COL10077
          Length = 3495

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 327  gagactggcccgctcaggctcctg 350
            |||||||||| |||||||||||||
Sbjct: 1149 gagactggccagctcaggctcctg 1126
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>emb|AJ277546.2|HSA277546 Homo sapiens WEE1 gene for protein kinase and partial ZNF143 gene for
              zinc finger transcription factor
          Length = 131998

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    tttcagtttgacaattattt 137
              ||||||||||||||||||||
Sbjct: 119884 tttcagtttgacaattattt 119903
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>emb|BX897671.5| Zebrafish DNA sequence from clone CH211-214K5 in linkage group 4,
             complete sequence
          Length = 201108

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   attatttgtgtttgtgtttc 150
             ||||||||||||||||||||
Sbjct: 95136 attatttgtgtttgtgtttc 95155
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>gb|AY193643.1| Lactuca saligna clone LC13 resistance protein RGC2-like gene,
           partial sequence
          Length = 1447

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 aattatttgtgtttgtgttt 149
           ||||||||||||||||||||
Sbjct: 593 aattatttgtgtttgtgttt 612
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>dbj|AK090439.1| Homo sapiens mRNA for FLJ00359 protein
          Length = 5833

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 327  gagactggcccgctcaggctcctg 350
            |||||||||| |||||||||||||
Sbjct: 1072 gagactggccagctcaggctcctg 1049
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>dbj|AK074182.1| Homo sapiens mRNA for FLJ00255 protein
          Length = 4520

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 327  gagactggcccgctcaggctcctg 350
            |||||||||| |||||||||||||
Sbjct: 2030 gagactggccagctcaggctcctg 2007


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,531,215
Number of Sequences: 3902068
Number of extensions: 3531215
Number of successful extensions: 71266
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 71094
Number of HSP's gapped (non-prelim): 180
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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