ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23d23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY112315.1| Zea mays CL1308_2 mRNA sequence 167 6e-38
2emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2 155 2e-34
3emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5 151 4e-33
4gb|AY104474.1| Zea mays PCO112790 mRNA sequence 151 4e-33
5gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence 143 9e-31
6dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
7ref|XM_450544.1| Oryza sativa (japonica cultivar-group), mRNA 94 7e-16
8ref|XM_506649.1| PREDICTED Oryza sativa (japonica cultivar-group... 94 7e-16
9ref|XM_450545.1| Oryza sativa (japonica cultivar-group), mRNA 94 7e-16
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
11dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
12dbj|AB117994.1| Oryza sativa (japonica cultivar-group) bip107 mR... 94 7e-16
13dbj|AK098857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 7e-16
14dbj|AK067685.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 7e-16
15dbj|AK058307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 7e-16
16gb|AY747501.1| Arachis hypogaea isolate PRGAFG08 resistance prot... 48 0.039
17ref|NM_106433.3| Arabidopsis thaliana translation initiation fac... 42 2.4
18ref|XM_517102.1| PREDICTED: Pan troglodytes similar to actin bin... 42 2.4
19gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, comple... 42 2.4
20gb|AY114664.1| Arabidopsis thaliana putative eukaryotic translat... 42 2.4
21gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, com... 42 2.4
22gb|AY065097.1| Arabidopsis thaliana putative eukaryotic translat... 42 2.4
23gb|AY062694.1| Arabidopsis thaliana putative eukaryotic translat... 42 2.4
24gb|BC102699.1| Bos taurus similar to Actin, aortic smooth muscle... 42 2.4
25gb|AC012193.6|AC012193 Arabidopsis thaliana chromosome 1 BAC T32... 42 2.4
26gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana... 42 2.4
27gb|BT021508.1| Bos taurus actin, alpha 2, smooth muscle, aorta (... 42 2.4
28gb|BT002163.1| Arabidopsis thaliana putative eukaryotic translat... 42 2.4
29emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on ch... 42 2.4
30gb|AY785504.1| Arabidopsis thaliana At1g77850 gene, promoter region 42 2.4
31ref|NM_001034502.1| Bos taurus similar to Actin, aortic smooth m... 42 2.4
32ref|XM_529781.1| PREDICTED: Pan troglodytes LOC454103 (LOC454103... 40 9.6
33gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 9.6
34gb|AC107702.12| Mus musculus chromosome 3, clone RP23-391G19, co... 40 9.6
35gb|AC164440.4| Mus musculus BAC clone RP23-27B3 from chromosome ... 40 9.6
36gb|AE006305.1| Lactococcus lactis subsp. lactis IL1403 section 6... 40 9.6
37gb|AE014304.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 9.6
38gb|BC091058.1| Xenopus tropicalis hypothetical protein LOC594878... 40 9.6
39emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chro... 40 9.6
40emb|AL445188.5| Human DNA sequence from clone RP11-260E14 on chr... 40 9.6
41gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 9.6
42emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 o... 40 9.6
43gb|AY099291.1| Rhodobacter capsulatus ribosomal protein S12 (rps... 40 9.6
44dbj|AB226103.1| Aspergillus oryzae cDNA, contig sequence: AoEST2960 40 9.6
45gb|AC093560.2| Homo sapiens chromosome 1 clone RP11-398H19, comp... 40 9.6
46dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 9.6
47dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 40 9.6
48gb|AE002160.2| Chlamydia muridarum Nigg, complete genome 40 9.6
49dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 9.6
50dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.6
51gb|AC127305.5| Mus musculus BAC clone RP23-289H23 from 3, comple... 40 9.6
52gb|AY103775.1| Zea mays PCO076979 mRNA sequence 40 9.6
53dbj|AP005265.2| Homo sapiens genomic DNA, chromosome 18, clone:R... 40 9.6 
>gb|AY112315.1| Zea mays CL1308_2 mRNA sequence
          Length = 840

 Score =  167 bits (84), Expect = 6e-38
 Identities = 267/328 (81%)
 Strand = Plus / Minus

                                                                       
Query: 189 tcgtcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgg 248
           ||||||||||||||||||||||||||||| || |  |||||||| ||||| || ||||||
Sbjct: 488 tcgtcagactcggcgctctggagccactcgacaaacggcttggcattcttgacgacctgg 429

                                                                       
Query: 249 gagtccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaagg 308
           |||||||| || || || |||||  |  ||||||| | |||||  ||||| ||||| |||
Sbjct: 428 gagtcctttccagctgcgacagcagcgttgtaccagtccacaacggtttcctcctccagg 369

                                                                       
Query: 309 acatctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctg 368
           | ||||||||| || ||||| |||||||| || || |  |||||||| ||||||| | ||
Sbjct: 368 atatctccgtcgtacagggctttcaggacaactgggacctccttcagcgcctcggggttg 309

                                                                       
Query: 369 cacttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggc 428
           ||||||| ||  || ||||| ||||  || | ||| ||  |||||||| | ||||| |||
Sbjct: 308 cacttgctgccaaaagcctcgatggcttgaatcagcagggtctgggcaccctcatctggc 249

                                                                       
Query: 429 acagcagcagcaaggtacttcttgttcttcatcacatcctttgcaaaccccttgccagca 488
           |||||| | ||||||||||||||||||||||  || ||||||||||| ||||||||  ||
Sbjct: 248 acagcaactgcaaggtacttcttgttcttcacgacctcctttgcaaatcccttgcccaca 189

                                       
Query: 489 ccatggaagagcgcctcgaagagagcat 516
           || |  ||||| ||||||| ||||||||
Sbjct: 188 ccgtcaaagagagcctcgaggagagcat 161
to top
>emb|AJ132240.1|ZMA132240 Zea mays eIF-5 gene, exons 1-2
          Length = 6831

 Score =  155 bits (78), Expect = 2e-34
 Identities = 348/438 (79%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||||||||| |||||||||||||| ||||  |||||||| ||||| ||||||||||||
Sbjct: 4878 tcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgggag 4819

                                                                        
Query: 252  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 311
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 4818 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 4759

                                                                        
Query: 312  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 371
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 4758 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 4699

                                                                        
Query: 372  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 431
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 4698 ttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 4639

                                                                        
Query: 432  gcagcagcaaggtacttcttgttcttcatcacatcctttgcaaaccccttgccagcacca 491
            ||| | ||||||||||||||||||||||  || || || |  || ||||| ||  |||||
Sbjct: 4638 gcaactgcaaggtacttcttgttcttcacaacctctttggtgaatcccttacccacacca 4579

                                                                        
Query: 492  tggaagagcgcctcgaagagagcatctatcacatccttcgggggcagggtcgaggaggac 551
               ||||| ||||| | ||||||||  ||||| ||||  ||||| ||||| || |||| |
Sbjct: 4578 ccaaagagagcctccaggagagcattcatcacgtcctgggggggaagggttgatgaggcc 4519

                                                                        
Query: 552  agcaccgccttgacctgagctgccgtggcagcattgcctaggctcgccttgatctcttca 611
            ||||| ||||||| ||| |  |  || | |||| | |||||||| |||||||| ||| ||
Sbjct: 4518 agcacagccttgagctgggaaggggtcggagcacttcctaggctagccttgatgtctcca 4459

                              
Query: 612  accagttcatcataggga 629
            | |||||| |||||||||
Sbjct: 4458 atcagttcttcataggga 4441
to top
>emb|X99517.1|ZMEIF5 Z.mays mRNA for eukaryotic initiation factor-5
          Length = 1975

 Score =  151 bits (76), Expect = 4e-33
 Identities = 220/268 (82%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||||||||| |||||||||||||| ||||  |||||||| ||||| ||||||||||||
Sbjct: 1679 tcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgggag 1620

                                                                        
Query: 252  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 311
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 1619 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 1560

                                                                        
Query: 312  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 371
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 1559 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 1500

                                                                        
Query: 372  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 431
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 1499 ttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 1440

                                        
Query: 432  gcagcagcaaggtacttcttgttcttca 459
            ||| | ||||||||||||||||||||||
Sbjct: 1439 gcaactgcaaggtacttcttgttcttca 1412
to top
>gb|AY104474.1| Zea mays PCO112790 mRNA sequence
          Length = 2008

 Score =  151 bits (76), Expect = 4e-33
 Identities = 220/268 (82%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||||||||| |||||||||||||| ||||  |||||||| ||||| ||||||||||||
Sbjct: 1740 tcagactcggcactctggagccactcgacgaacggcttggcattcttgacaacctgggag 1681

                                                                        
Query: 252  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 311
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 1680 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 1621

                                                                        
Query: 312  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 371
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 1620 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 1561

                                                                        
Query: 372  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 431
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 1560 ttcccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 1501

                                        
Query: 432  gcagcagcaaggtacttcttgttcttca 459
            ||| | ||||||||||||||||||||||
Sbjct: 1500 gcaactgcaaggtacttcttgttcttca 1473
to top
>gb|BT018691.1| Zea mays clone EL01N0512C10.d mRNA sequence
          Length = 1992

 Score =  143 bits (72), Expect = 9e-31
 Identities = 219/268 (81%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||||||||| |||||||||||||| ||||  || ||||| ||||| ||||||||||||
Sbjct: 1725 tcagactcggcactctggagccactcgacgaacgggttggcattcttgacaacctgggag 1666

                                                                        
Query: 252  tccttgccggcagcaacagcttcactgtaccactgcacaatagtttcttcctcaaggaca 311
            ||||| || || || ||||| ||| ||||||| | |||||| ||||| || || |||| |
Sbjct: 1665 tccttcccagctgcgacagcatcattgtaccagtccacaatggtttcctcgtccaggata 1606

                                                                        
Query: 312  tctccgtcatagagggccttcaggacgacaggcaattccttcagggcctcggcgctgcac 371
            ||||| || |||||||| || ||||| || || |  |||||||| ||||| | | |||||
Sbjct: 1605 tctccatcgtagagggctttgaggacaacgggaacctccttcagcgcctcagggttgcac 1546

                                                                        
Query: 372  ttgccgcagaacgcctcaatggactggagcaggagcatctgggcagcttcatcaggcaca 431
            || || |  || |||||||||| ||| | ||| ||  |||||||| | ||||| ||||||
Sbjct: 1545 ttaccaccaaaagcctcaatggcctgaaccagaagggtctgggcaccctcatctggcaca 1486

                                        
Query: 432  gcagcagcaaggtacttcttgttcttca 459
            ||| | ||||||||||||||||||||||
Sbjct: 1485 gcaactgcaaggtacttcttgttcttca 1458
to top
>dbj|AP005931.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0545E05
          Length = 163229

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Plus

                                                                         
Query: 192   tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
             ||||| || ||||||||||||||||||||||  || ||||| |||||||| |||||||| 
Sbjct: 26661 tcagaatccgcgctctggagccactccacgaatggtttggcattcttcaccacctgggac 26720

                                                
Query: 252   tccttgccggcagcaacagcttcactgtaccactg 286
             |||||||| |||||||||| |||| ||||||||||
Sbjct: 26721 tccttgccagcagcaacagattcattgtaccactg 26755



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                         
Query: 399   agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
             ||||||| ||||||||  ||||||||||| |||||||| || ||| | ||||| ||||||
Sbjct: 26868 agcaggaccatctgggaggcttcatcaggtacagcagccgcgaggaatttcttcttcttc 26927

                                       
Query: 459   atcacatcctttgcaaaccccttgcc 484
             |  || ||||| ||||| || |||||
Sbjct: 26928 acaacctccttggcaaatcctttgcc 26953
to top
>ref|XM_450544.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2008

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1748 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1689

                                               
Query: 252  tccttgccggcagcaacagcttcactgtaccactg 286
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1688 tccttgccaccagcaacagattcattataccactg 1654



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 399  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1541 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1482

             
Query: 459  a 459
            |
Sbjct: 1481 a 1481
to top
>ref|XM_506649.1| PREDICTED Oryza sativa (japonica cultivar-group), P0706E03.4-1 mRNA
          Length = 2011

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1751 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1692

                                               
Query: 252  tccttgccggcagcaacagcttcactgtaccactg 286
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1691 tccttgccaccagcaacagattcattataccactg 1657



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 399  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1544 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1485

             
Query: 459  a 459
            |
Sbjct: 1484 a 1484
to top
>ref|XM_450545.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1407

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1154 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1095

                                               
Query: 252  tccttgccggcagcaacagcttcactgtaccactg 286
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1094 tccttgccaccagcaacagattcattataccactg 1060



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 399 agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
           ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 947 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 888

            
Query: 459 a 459
           |
Sbjct: 887 a 887
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                           
Query: 192     tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
               ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 9584894 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 9584835

                                                  
Query: 252     tccttgccggcagcaacagcttcactgtaccactg 286
               ||||||||  ||||||||| |||| | ||||||||
Sbjct: 9584834 tccttgccaccagcaacagattcattataccactg 9584800



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                           
Query: 399     agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
               ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 9584687 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 9584628

                
Query: 459     a 459
               |
Sbjct: 9584627 a 9584627
to top
>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0706E03
          Length = 188028

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                         
Query: 192   tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
             ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 24991 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 24932

                                                
Query: 252   tccttgccggcagcaacagcttcactgtaccactg 286
             ||||||||  ||||||||| |||| | ||||||||
Sbjct: 24931 tccttgccaccagcaacagattcattataccactg 24897



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 399   agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
             ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 24784 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 24725

              
Query: 459   a 459
             |
Sbjct: 24724 a 24724
to top
>dbj|AB117994.1| Oryza sativa (japonica cultivar-group) bip107 mRNA for BRI1-KD
            interacting protein 107, partial cds
          Length = 1430

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1152 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1093

                                               
Query: 252  tccttgccggcagcaacagcttcactgtaccactg 286
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1092 tccttgccaccagcaacagattcattataccactg 1058



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 399 agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
           ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 945 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 886

            
Query: 459 a 459
           |
Sbjct: 885 a 885
to top
>dbj|AK098857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L01, full
            insert sequence
          Length = 2008

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1748 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1689

                                               
Query: 252  tccttgccggcagcaacagcttcactgtaccactg 286
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1688 tccttgccaccagcaacagattcattataccactg 1654



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 399  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1541 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1482

             
Query: 459  a 459
            |
Sbjct: 1481 a 1481
to top
>dbj|AK067685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G06, full
            insert sequence
          Length = 2010

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1750 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1691

                                               
Query: 252  tccttgccggcagcaacagcttcactgtaccactg 286
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1690 tccttgccaccagcaacagattcattataccactg 1656



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 399  agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
            ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 1543 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 1484

             
Query: 459  a 459
            |
Sbjct: 1483 a 1483
to top
>dbj|AK058307.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H04, full
            insert sequence
          Length = 1407

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagactcggcgctctggagccactccacgacgggcttggcgttcttcacaacctgggag 251
            ||||| || ||||||||||||||||||||||  |||||||| |||||||| |||||||| 
Sbjct: 1154 tcagaatccgcgctctggagccactccacgaacggcttggcattcttcaccacctgggac 1095

                                               
Query: 252  tccttgccggcagcaacagcttcactgtaccactg 286
            ||||||||  ||||||||| |||| | ||||||||
Sbjct: 1094 tccttgccaccagcaacagattcattataccactg 1060



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                       
Query: 399 agcaggagcatctgggcagcttcatcaggcacagcagcagcaaggtacttcttgttcttc 458
           ||||||| ||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct: 947 agcaggaccatctgggaggcttcatcaggcacagcagcagcgaggaatttcttcttcttc 888

            
Query: 459 a 459
           |
Sbjct: 887 a 887
to top
>gb|AY747501.1| Arachis hypogaea isolate PRGAFG08 resistance protein PRG gene,
           partial cds
          Length = 366

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 440 aaggtacttcttgttcttcatcac 463
           ||||||||||||||||||||||||
Sbjct: 289 aaggtacttcttgttcttcatcac 266
to top
>ref|NM_106433.3| Arabidopsis thaliana translation initiation factor AT1G77840 mRNA,
            complete cds
          Length = 1788

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 192  tcagactcggcgctctggagccactccac 220
            |||||||| |||||||| |||||||||||
Sbjct: 1583 tcagactcagcgctctgaagccactccac 1555
to top
>ref|XM_517102.1| PREDICTED: Pan troglodytes similar to actin binding LIM protein
            family, member 2; actin binding LIM protein 2
            (LOC461112), mRNA
          Length = 5823

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  cggcagcaacagcttcactgt 279
            |||||||||||||||||||||
Sbjct: 3494 cggcagcaacagcttcactgt 3514
to top
>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence
          Length = 214098

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 259    cggcagcaacagcttcactgt 279
              |||||||||||||||||||||
Sbjct: 166280 cggcagcaacagcttcactgt 166260
to top
>gb|AY114664.1| Arabidopsis thaliana putative eukaryotic translation initiation
            factor 5 (At1g77840) mRNA, complete cds
          Length = 1348

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 192  tcagactcggcgctctggagccactccac 220
            |||||||| |||||||| |||||||||||
Sbjct: 1295 tcagactcagcgctctgaagccactccac 1267
to top
>gb|AC026975.5| Homo sapiens chromosome 11, clone RP11-709C9, complete sequence
          Length = 200105

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    caactgactcaaactccaaat 68
             |||||||||||||||||||||
Sbjct: 26049 caactgactcaaactccaaat 26029
to top
>gb|AY065097.1| Arabidopsis thaliana putative eukaryotic translation initiation
            factor 5 (At1g77840; T32E8.15) mRNA, complete cds
          Length = 1770

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 192  tcagactcggcgctctggagccactccac 220
            |||||||| |||||||| |||||||||||
Sbjct: 1583 tcagactcagcgctctgaagccactccac 1555
to top
>gb|AY062694.1| Arabidopsis thaliana putative eukaryotic translation initiation
            factor 5 (At1g77840; T32E8.15) mRNA, complete cds
          Length = 1784

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 192  tcagactcggcgctctggagccactccac 220
            |||||||| |||||||| |||||||||||
Sbjct: 1580 tcagactcagcgctctgaagccactccac 1552
to top
>gb|BC102699.1| Bos taurus similar to Actin, aortic smooth muscle (Alpha-actin-2),
           mRNA (cDNA clone MGC:127800 IMAGE:7954549), complete cds
          Length = 1364

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 543 gaggaggacagcaccgccttg 563
           |||||||||||||||||||||
Sbjct: 77  gaggaggacagcaccgccttg 97
to top
>gb|AC012193.6|AC012193 Arabidopsis thaliana chromosome 1 BAC T32E8 genomic sequence, complete
             sequence
          Length = 82454

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 192   tcagactcggcgctctggagccactccac 220
             |||||||| |||||||| |||||||||||
Sbjct: 77738 tcagactcagcgctctgaagccactccac 77710
to top
>gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I,
             complete sequence
          Length = 110565

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 192   tcagactcggcgctctggagccactccac 220
             |||||||| |||||||| |||||||||||
Sbjct: 13646 tcagactcagcgctctgaagccactccac 13618
to top
>gb|BT021508.1| Bos taurus actin, alpha 2, smooth muscle, aorta (ACTA2), mRNA,
           complete cds
          Length = 1330

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 543 gaggaggacagcaccgccttg 563
           |||||||||||||||||||||
Sbjct: 53  gaggaggacagcaccgccttg 73
to top
>gb|BT002163.1| Arabidopsis thaliana putative eukaryotic translation initiation
            factor 5 (At1g77840) mRNA, complete cds
          Length = 1348

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 192  tcagactcggcgctctggagccactccac 220
            |||||||| |||||||| |||||||||||
Sbjct: 1295 tcagactcagcgctctgaagccactccac 1267
to top
>emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on chromosome 4, complete
             sequence
          Length = 157168

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 420   tcatcaggcacagcagcagca 440
             |||||||||||||||||||||
Sbjct: 30014 tcatcaggcacagcagcagca 29994
to top
>gb|AY785504.1| Arabidopsis thaliana At1g77850 gene, promoter region
          Length = 2500

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 192 tcagactcggcgctctggagccactccac 220
           |||||||| |||||||| |||||||||||
Sbjct: 477 tcagactcagcgctctgaagccactccac 449
to top
>ref|NM_001034502.1| Bos taurus similar to Actin, aortic smooth muscle (Alpha-actin-2)
           (MGC127800), mRNA
          Length = 1364

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 543 gaggaggacagcaccgccttg 563
           |||||||||||||||||||||
Sbjct: 77  gaggaggacagcaccgccttg 97
to top
>ref|XM_529781.1| PREDICTED: Pan troglodytes LOC454103 (LOC454103), mRNA
          Length = 552

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 421 catcaggcacagcagcagca 440
           ||||||||||||||||||||
Sbjct: 436 catcaggcacagcagcagca 417
to top
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    tccgtcatagagggccttca 333
              ||||||||||||||||||||
Sbjct: 138053 tccgtcatagagggccttca 138072
to top
>gb|AC107702.12| Mus musculus chromosome 3, clone RP23-391G19, complete sequence
          Length = 219296

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 629    agtggctttggctccattctggtcaccattgg 660
              |||||||| |||||| ||||||||||||||||
Sbjct: 206249 agtggcttgggctcc-ttctggtcaccattgg 206219
to top
>gb|AC164440.4| Mus musculus BAC clone RP23-27B3 from chromosome 3, complete sequence
          Length = 218926

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 629   agtggctttggctccattctggtcaccattgg 660
             |||||||| |||||| ||||||||||||||||
Sbjct: 39474 agtggcttgggctcc-ttctggtcaccattgg 39444
to top
>gb|AE006305.1| Lactococcus lactis subsp. lactis IL1403 section 67 of 218 of the
            complete genome
          Length = 11435

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  gtacttcttgttcttcatca 462
            ||||||||||||||||||||
Sbjct: 1069 gtacttcttgttcttcatca 1050
to top
>gb|AE014304.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 1 of
              11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 661    aggtttcttcaacctttgct 680
              ||||||||||||||||||||
Sbjct: 222957 aggtttcttcaacctttgct 222976
to top
>gb|BC091058.1| Xenopus tropicalis hypothetical protein LOC594878, mRNA (cDNA clone
           IMAGE:7022094), partial cds
          Length = 1691

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 427 gcacagcagcagcaaggtac 446
           ||||||||||||||||||||
Sbjct: 127 gcacagcagcagcaaggtac 108
to top
>emb|AL391811.7| Human DNA sequence from clone RP11-449J1 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 150424

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   cagcaaggtacttcttgttc 455
             ||||||||||||||||||||
Sbjct: 62297 cagcaaggtacttcttgttc 62278
to top
>emb|AL445188.5| Human DNA sequence from clone RP11-260E14 on chromosome 13, complete
             sequence
          Length = 164061

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 661   aggtttcttcaacctttgct 680
             ||||||||||||||||||||
Sbjct: 33099 aggtttcttcaacctttgct 33118
to top
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    agcaggagcatctgggcagc 418
              ||||||||||||||||||||
Sbjct: 772056 agcaggagcatctgggcagc 772037
to top
>emb|AL009050.9|HS191L6 Human DNA sequence from clone RP1-191L6 on chromosome 20q12 Contains a
              novel gene, complete sequence
          Length = 125517

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 266    aacagcttcactgtaccactgcac 289
              |||||| |||||||||||||||||
Sbjct: 124452 aacagcatcactgtaccactgcac 124429
to top
>gb|AY099291.1| Rhodobacter capsulatus ribosomal protein S12 (rpsL) gene, partial
           cds; ribosomal protein S7 (rpsG), elongation factor G
           (fusA), and elongation factor TU (tufA) genes, complete
           cds; and ribosomal protein S10 (rpsJ) gene, partial cds
          Length = 4464

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 487 caccatggaagagcgcctcg 506
           ||||||||||||||||||||
Sbjct: 498 caccatggaagagcgcctcg 517
to top
>dbj|AB226103.1| Aspergillus oryzae cDNA, contig sequence: AoEST2960
          Length = 720

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 acaacctgggagtccttgcc 259
           ||||||||||||||||||||
Sbjct: 346 acaacctgggagtccttgcc 327
to top
>gb|AC093560.2| Homo sapiens chromosome 1 clone RP11-398H19, complete sequence
          Length = 199594

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 436  cagcaaggtacttcttgttc 455
            ||||||||||||||||||||
Sbjct: 2920 cagcaaggtacttcttgttc 2901
to top
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    ccttcaggacgacaggcaat 347
              ||||||||||||||||||||
Sbjct: 208928 ccttcaggacgacaggcaat 208909
to top
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    acaacctgggagtccttgcc 259
              ||||||||||||||||||||
Sbjct: 854208 acaacctgggagtccttgcc 854189
to top
>gb|AE002160.2| Chlamydia muridarum Nigg, complete genome
          Length = 1072950

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 605    ctcttcaaccagttcatcat 624
              ||||||||||||||||||||
Sbjct: 706164 ctcttcaaccagttcatcat 706183
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 350     cttcagggcctcggcgctgc 369
               ||||||||||||||||||||
Sbjct: 1571400 cttcagggcctcggcgctgc 1571419
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 357     gcctcggcgctgcacttgcc 376
               ||||||||||||||||||||
Sbjct: 8835634 gcctcggcgctgcacttgcc 8835653
to top
>gb|AC127305.5| Mus musculus BAC clone RP23-289H23 from 3, complete sequence
          Length = 211760

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                              
Query: 629    agtggctttggctccattctggtcaccattgg 660
              |||||||| |||||| ||||||||||||||||
Sbjct: 156046 agtggcttgggctcc-ttctggtcaccattgg 156016
to top
>gb|AY103775.1| Zea mays PCO076979 mRNA sequence
          Length = 1495

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 424 caggcacagcagcagcaagg 443
           ||||||||||||||||||||
Sbjct: 182 caggcacagcagcagcaagg 163
to top
>dbj|AP005265.2| Homo sapiens genomic DNA, chromosome 18, clone:RP11-78F17, complete
             sequence
          Length = 51000

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    aactcaactgactcaaactccaaa 67
             ||||||| ||||||||||||||||
Sbjct: 20234 aactcaaatgactcaaactccaaa 20211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,158,413
Number of Sequences: 3902068
Number of extensions: 6158413
Number of successful extensions: 133343
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 133020
Number of HSP's gapped (non-prelim): 328
length of query: 699
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 676
effective length of database: 17,143,297,704
effective search space: 11588869247904
effective search space used: 11588869247904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top