ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22o19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187864.1| Oryza sativa (japonica cultivar-group), Ozsa830... 182 9e-43
2dbj|AK104687.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 9e-43
3dbj|AK068737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 9e-43
4dbj|AB059621.1| Oryza sativa OSKgamma mRNA for shaggy-related pr... 182 9e-43
5dbj|AK099742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
6gb|AY103545.1| Zea mays PCO153236 mRNA sequence 135 2e-28
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
8dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
9emb|X99100.1|TRTRK T.repens mRNA for protein kinase 74 6e-10
10gb|DQ241848.1| Solanum tuberosum clone 187B01 NtK-1-like mRNA, c... 48 0.034
11gb|DQ252508.1| Solanum tuberosum clone 086D08 Ser/Thr protein ki... 48 0.034
12gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, comp... 46 0.13
13gb|AY888005.1| Astragalus membranaceus clone AM77 putative prote... 46 0.13
14emb|X68411.1|AMMSK1A A.medicago MSK-1 mRNA for protein kinase 44 0.53
15ref|XM_387505.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 2.1
16emb|Z72504.1|CEC29E6 Caenorhabditis elegans Cosmid C29E6, comple... 42 2.1
17gb|DQ074903.1| Lactobacillus reuteri lr1464 (lr1464) gene, compl... 42 2.1
18gb|AF273784.1| Caenorhabditis elegans clone yk514c7 nuclear rece... 42 2.1
19ref|NM_069853.3| Caenorhabditis elegans Nuclear Hormone Receptor... 42 2.1
20ref|NM_122557.2| Arabidopsis thaliana ATSK11; protein kinase AT5... 40 8.3
21gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, compl... 40 8.3
22gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete... 40 8.3
23emb|AL590028.7| Human DNA sequence from clone RP11-384M8 on chro... 40 8.3
24gb|AY142595.1| Arabidopsis thaliana putative shaggy kinase alpha... 40 8.3
25emb|X68410.1|AMMSK2A A.medicago MSK-2 mRNA for protein kinase 40 8.3
26gb|AY046024.1| Arabidopsis thaliana putative shaggy kinase alpha... 40 8.3
27emb|AL591070.19| Mouse DNA sequence from clone RP23-185A18 on ch... 40 8.3
28emb|BX571835.9| Zebrafish DNA sequence from clone XX-114C19 in l... 40 8.3
29gb|AC113150.4| Homo sapiens BAC clone RP13-339P19 from 4, comple... 40 8.3
30gb|AC092812.2| Homo sapiens chromosome 1 clone RP11-536F12, comp... 40 8.3
31gb|AF428327.1|AF428327 Arabidopsis thaliana AT5g26750/F2P16_10 m... 40 8.3
32gb|AC141000.7| Homo sapiens 3 BAC RP11-480C15 (Roswell Park Canc... 40 8.3
33emb|BX831446.1|CNS09YSF Arabidopsis thaliana Full-length cDNA Co... 40 8.3
34gb|AC011737.10| Homo sapiens BAC clone RP11-33N4 from 2, complet... 40 8.3
35gb|AC105287.5| Homo sapiens BAC clone RP11-313M11 from 4, comple... 40 8.3
36gb|AC158187.2| Selaginella moellendorffii clone JGIASXY-5I19, co... 40 8.3
37emb|AL954314.8| Zebrafish DNA sequence from clone XX-162M2 in li... 40 8.3
38emb|Y18451.1|HSAP18451 Homo sapiens Bassoon (BSN) gene, exons 6 ... 40 8.3
39gb|AC004807.1|AC004807 Mus musculus chromosome 11, clone mCIT.26... 40 8.3 
>ref|NM_187864.1| Oryza sativa (japonica cultivar-group), Ozsa8308 predicted mRNA
          Length = 1227

 Score =  182 bits (92), Expect = 9e-43
 Identities = 145/163 (88%)
 Strand = Plus / Minus

                                                                        
Query: 447  tgggattcctttcagttcgttaggcttgaagttaaaaagaggaggcagaaagcgaccatt 506
            |||||||||||||||||| | |||||||||||| || |||||||||| |||||| |||||
Sbjct: 1161 tgggattcctttcagttcatgaggcttgaagttgaagagaggaggcaaaaagcggccatt 1102

                                                                        
Query: 507  cggaaggcgggtacccgggtcccgaagctcatcaaagaaggggtgaacaagtgcctccac 566
            ||||||||| | |   ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 1101 cggaaggcgagcattagggtctcgaagctcatcaaagaatgggtgaacaagtgcttccac 1042

                                                       
Query: 567  agcagtgcatcttangttgggcgagtactggaggagccgagag 609
            |||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct: 1041 agcagtgcatcttaggttgggtgagtactggagcagcctagag 999
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>dbj|AK104687.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-E09, full
            insert sequence
          Length = 1600

 Score =  182 bits (92), Expect = 9e-43
 Identities = 145/163 (88%)
 Strand = Plus / Minus

                                                                        
Query: 447  tgggattcctttcagttcgttaggcttgaagttaaaaagaggaggcagaaagcgaccatt 506
            |||||||||||||||||| | |||||||||||| || |||||||||| |||||| |||||
Sbjct: 1208 tgggattcctttcagttcatgaggcttgaagttgaagagaggaggcaaaaagcggccatt 1149

                                                                        
Query: 507  cggaaggcgggtacccgggtcccgaagctcatcaaagaaggggtgaacaagtgcctccac 566
            ||||||||| | |   ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 1148 cggaaggcgagcattagggtctcgaagctcatcaaagaatgggtgaacaagtgcttccac 1089

                                                       
Query: 567  agcagtgcatcttangttgggcgagtactggaggagccgagag 609
            |||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct: 1088 agcagtgcatcttaggttgggtgagtactggagcagcctagag 1046



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                        
Query: 98   aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 151
            ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 1584 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 1525

                       
Query: 152  caattctcagg 162
            |||||||||||
Sbjct: 1524 caattctcagg 1514
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>dbj|AK068737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158B10, full
            insert sequence
          Length = 1829

 Score =  182 bits (92), Expect = 9e-43
 Identities = 145/163 (88%)
 Strand = Plus / Minus

                                                                        
Query: 447  tgggattcctttcagttcgttaggcttgaagttaaaaagaggaggcagaaagcgaccatt 506
            |||||||||||||||||| | |||||||||||| || |||||||||| |||||| |||||
Sbjct: 1361 tgggattcctttcagttcatgaggcttgaagttgaagagaggaggcaaaaagcggccatt 1302

                                                                        
Query: 507  cggaaggcgggtacccgggtcccgaagctcatcaaagaaggggtgaacaagtgcctccac 566
            ||||||||| | |   ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 1301 cggaaggcgagcattagggtctcgaagctcatcaaagaatgggtgaacaagtgcttccac 1242

                                                       
Query: 567  agcagtgcatcttangttgggcgagtactggaggagccgagag 609
            |||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct: 1241 agcagtgcatcttaggttgggtgagtactggagcagcctagag 1199



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                        
Query: 98   aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 151
            ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 1737 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 1678

                       
Query: 152  caattctcagg 162
            |||||||||||
Sbjct: 1677 caattctcagg 1667
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>dbj|AB059621.1| Oryza sativa OSKgamma mRNA for shaggy-related protein kinase gamma,
            complete cds
          Length = 1592

 Score =  182 bits (92), Expect = 9e-43
 Identities = 145/163 (88%)
 Strand = Plus / Minus

                                                                        
Query: 447  tgggattcctttcagttcgttaggcttgaagttaaaaagaggaggcagaaagcgaccatt 506
            |||||||||||||||||| | |||||||||||| || |||||||||| |||||| |||||
Sbjct: 1365 tgggattcctttcagttcatgaggcttgaagttgaagagaggaggcaaaaagcggccatt 1306

                                                                        
Query: 507  cggaaggcgggtacccgggtcccgaagctcatcaaagaaggggtgaacaagtgcctccac 566
            ||||||||| | |   ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 1305 cggaaggcgagcattagggtctcgaagctcatcaaagaatgggtgaacaagtgcttccac 1246

                                                       
Query: 567  agcagtgcatcttangttgggcgagtactggaggagccgagag 609
            |||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct: 1245 agcagtgcatcttaggttgggtgagtactggagcagcctagag 1203
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>dbj|AK099742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C23, full
            insert sequence
          Length = 2624

 Score =  174 bits (88), Expect = 2e-40
 Identities = 144/163 (88%)
 Strand = Plus / Minus

                                                                        
Query: 447  tgggattcctttcagttcgttaggcttgaagttaaaaagaggaggcagaaagcgaccatt 506
            |||||||||||||||||| | |||||||||||| || |||||||||| |||||| |||||
Sbjct: 2232 tgggattcctttcagttcatgaggcttgaagttgaagagaggaggcaaaaagcggccatt 2173

                                                                        
Query: 507  cggaaggcgggtacccgggtcccgaagctcatcaaagaaggggtgaacaagtgcctccac 566
            ||||||||| | |   ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 2172 cggaaggcgagcattagggtctcgaagctcatcaaagaatgggtgaacaagtgcttccac 2113

                                                       
Query: 567  agcagtgcatcttangttgggcgagtactggaggagccgagag 609
            ||| |||||||||| |||||| ||||||||||| |||| ||||
Sbjct: 2112 agcggtgcatcttaggttgggtgagtactggagcagcctagag 2070



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                        
Query: 98   aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 151
            ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 2608 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 2549

                       
Query: 152  caattctcagg 162
            |||||||||||
Sbjct: 2548 caattctcagg 2538
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>gb|AY103545.1| Zea mays PCO153236 mRNA sequence
          Length = 1967

 Score =  135 bits (68), Expect = 2e-28
 Identities = 139/163 (85%)
 Strand = Plus / Minus

                                                                        
Query: 447  tgggattcctttcagttcgttaggcttgaagttaaaaagaggaggcagaaagcgaccatt 506
            ||||| |||||| ||||||| ||||||||| || || || || |||| ||||||||||||
Sbjct: 1514 tgggactcctttaagttcgtgaggcttgaaattgaatagtggtggcaaaaagcgaccatt 1455

                                                                        
Query: 507  cggaaggcgggtacccgggtcccgaagctcatcaaagaaggggtgaacaagtgcctccac 566
             |||||||| |||   || || ||||||||||||||||| ||||||||||||||||||| 
Sbjct: 1454 tggaaggcgagtattaggatctcgaagctcatcaaagaatgggtgaacaagtgcctccat 1395

                                                       
Query: 567  agcagtgcatcttangttgggcgagtactggaggagccgagag 609
            |||||||||||| |  || || ||||||||||| |||||||||
Sbjct: 1394 agcagtgcatctcagatttggggagtactggagtagccgagag 1352



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 54/60 (90%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                        
Query: 94   ctacaataaatacattcatacttctctagaacatattac-agatcagctatggcaatctc 152
            |||| ||||||||||||||||| ||||| |||| ||||| |||||| |||||||||||||
Sbjct: 1840 ctaccataaatacattcatactgctctataacaaattacaagatcaactatggcaatctc 1781



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 225  actactcagctacacaggtca 245
            |||||||||||||||||||||
Sbjct: 1725 actactcagctacacaggtca 1705
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  101 bits (51), Expect = 3e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                           
Query: 468     aggcttgaagttaaaaagaggaggcagaaagcgaccattcggaaggcgggtacccgggtc 527
               |||||||||||| || |||||||||| |||||| |||||||||||||| | |   |||||
Sbjct: 8332269 aggcttgaagttgaagagaggaggcaaaaagcggccattcggaaggcgagcattagggtc 8332210

                                                      
Query: 528     ccgaagctcatcaaagaaggggtgaacaagtgcctccac 566
                ||||||||||||||||| |||||||||||||| |||||
Sbjct: 8332209 tcgaagctcatcaaagaatgggtgaacaagtgcttccac 8332171



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 565     acagcagtgcatcttangttgggcgagtactggaggagccgagag 609
               |||||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct: 8332059 acagcagtgcatcttaggttgggtgagtactggagcagcctagag 8332015



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                           
Query: 98      aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 151
               ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 8332843 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 8332784

                          
Query: 152     caattctcagg 162
               |||||||||||
Sbjct: 8332783 caattctcagg 8332773
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>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0434D08
          Length = 161266

 Score =  101 bits (51), Expect = 3e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                          
Query: 468    aggcttgaagttaaaaagaggaggcagaaagcgaccattcggaaggcgggtacccgggtc 527
              |||||||||||| || |||||||||| |||||| |||||||||||||| | |   |||||
Sbjct: 126200 aggcttgaagttgaagagaggaggcaaaaagcggccattcggaaggcgagcattagggtc 126141

                                                     
Query: 528    ccgaagctcatcaaagaaggggtgaacaagtgcctccac 566
               ||||||||||||||||| |||||||||||||| |||||
Sbjct: 126140 tcgaagctcatcaaagaatgggtgaacaagtgcttccac 126102



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                           
Query: 565    acagcagtgcatcttangttgggcgagtactggaggagccgagag 609
              |||||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct: 125990 acagcagtgcatcttaggttgggtgagtactggagcagcctagag 125946



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                          
Query: 98     aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 151
              ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 126774 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 126715

                         
Query: 152    caattctcagg 162
              |||||||||||
Sbjct: 126714 caattctcagg 126704
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>emb|X99100.1|TRTRK T.repens mRNA for protein kinase
          Length = 1300

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 445 actgggattcctttcagttcgttaggcttgaagttaaaaagaggaggcagaaagcgacca 504
           |||||||||||||| ||||||| ||| ||||||||||| || || || || || ||||||
Sbjct: 962 actgggattccttttagttcgtgaggtttgaagttaaatagtggtggaaggaaacgacca 903

                                                    
Query: 505 ttcggaaggcgggtacccgggtcccgaagctcatcaaagaa 545
            |||| | ||||| |  |||||| |||||||||||||||||
Sbjct: 902 gtcggcaagcgggcattcgggtcacgaagctcatcaaagaa 862
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>gb|DQ241848.1| Solanum tuberosum clone 187B01 NtK-1-like mRNA, complete cds
          Length = 1711

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                        
Query: 471  cttgaagttaaaaagaggaggcagaaagcgaccattcggaaggcgggtacccgggtcccg 530
            |||||||||||| |  ||||| |||||||| ||||| || ||||| |||   || || ||
Sbjct: 1282 cttgaagttaaacaagggaggaagaaagcgtccattaggcaggcgtgtattgggatcacg 1223

                                    
Query: 531  aagctcatcaaagaaggggtgaac 554
            |||||| ||||| |||||||||||
Sbjct: 1222 aagctcgtcaaaaaaggggtgaac 1199
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>gb|DQ252508.1| Solanum tuberosum clone 086D08 Ser/Thr protein kinase-like mRNA,
            complete cds
          Length = 1593

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                        
Query: 471  cttgaagttaaaaagaggaggcagaaagcgaccattcggaaggcgggtacccgggtcccg 530
            |||||||||||| |  ||||| |||||||| ||||| || ||||| |||   || || ||
Sbjct: 1267 cttgaagttaaacaagggaggaagaaagcgtccattaggcaggcgtgtattgggatcacg 1208

                                    
Query: 531  aagctcatcaaagaaggggtgaac 554
            |||||| ||||| |||||||||||
Sbjct: 1207 aagctcgtcaaaaaaggggtgaac 1184
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>gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, complete sequence
          Length = 192937

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 475   aagttaaaaagaggaggcagaaa 497
             |||||||||||||||||||||||
Sbjct: 78161 aagttaaaaagaggaggcagaaa 78183
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>gb|AY888005.1| Astragalus membranaceus clone AM77 putative protein kinase mRNA,
           partial cds
          Length = 805

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 523 gggtcccgaagctcatcaaagaa 545
           |||||||||||||||||||||||
Sbjct: 317 gggtcccgaagctcatcaaagaa 295
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>emb|X68411.1|AMMSK1A A.medicago MSK-1 mRNA for protein kinase
          Length = 1613

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 453  tcctttcagttcgttaggcttgaagttaaa 482
            |||||||||||||| ||| |||||||||||
Sbjct: 1230 tcctttcagttcgtgaggtttgaagttaaa 1201
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>ref|XM_387505.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07329.1)
           partial mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 523 gggtcccgaagctcatcaaagaaggggtg 551
           ||||| ||||||||||| |||||||||||
Sbjct: 971 gggtcgcgaagctcatcgaagaaggggtg 943
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>emb|Z72504.1|CEC29E6 Caenorhabditis elegans Cosmid C29E6, complete sequence
          Length = 44614

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 126   atattacagatcagctatggcaatc 150
             |||||| ||||||||||||||||||
Sbjct: 39441 atattaaagatcagctatggcaatc 39417
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>gb|DQ074903.1| Lactobacillus reuteri lr1464 (lr1464) gene, complete cds
          Length = 1257

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 tggcaatctcaattctcaggc 163
           |||||||||||||||||||||
Sbjct: 709 tggcaatctcaattctcaggc 729
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>gb|AF273784.1| Caenorhabditis elegans clone yk514c7 nuclear receptor NHR-43 mRNA,
            partial cds
          Length = 1658

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 126  atattacagatcagctatggcaatc 150
            |||||| ||||||||||||||||||
Sbjct: 1579 atattaaagatcagctatggcaatc 1555
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>ref|NM_069853.3| Caenorhabditis elegans Nuclear Hormone Receptor family member
            (nhr-43) (nhr-43) mRNA, complete cds
          Length = 1647

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 126  atattacagatcagctatggcaatc 150
            |||||| ||||||||||||||||||
Sbjct: 1594 atattaaagatcagctatggcaatc 1570
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>ref|NM_122557.2| Arabidopsis thaliana ATSK11; protein kinase AT5G26751 (ATSK11) mRNA,
            complete cds
          Length = 1662

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 454  cctttcagttcgttaggcttgaagttaaaaag 485
            |||||||| |||| |||||||||||| |||||
Sbjct: 1388 cctttcagctcgtgaggcttgaagttgaaaag 1357
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>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence
          Length = 242222

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   catgcatgggagctctgctt 407
             ||||||||||||||||||||
Sbjct: 72585 catgcatgggagctctgctt 72604
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>gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete sequence
          Length = 171537

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     caattaagaaactaggaaaa 68
              ||||||||||||||||||||
Sbjct: 156440 caattaagaaactaggaaaa 156459
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>emb|AL590028.7| Human DNA sequence from clone RP11-384M8 on chromosome 13, complete
             sequence
          Length = 129332

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    aataaatacattcatacttc 117
             ||||||||||||||||||||
Sbjct: 10689 aataaatacattcatacttc 10708
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>gb|AY142595.1| Arabidopsis thaliana putative shaggy kinase alpha (At5g26751) mRNA,
            complete cds
          Length = 1249

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 454  cctttcagttcgttaggcttgaagttaaaaag 485
            |||||||| |||| |||||||||||| |||||
Sbjct: 1145 cctttcagctcgtgaggcttgaagttgaaaag 1114
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>emb|X68410.1|AMMSK2A A.medicago MSK-2 mRNA for protein kinase
          Length = 1543

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 535  tcatcaaagaaggggtgaacaagtgcctccacagcagtgc 574
            |||||||||||||| ||||| || ||||||| ||| ||||
Sbjct: 1133 tcatcaaagaagggatgaaccagagcctccaaagctgtgc 1094
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>gb|AY046024.1| Arabidopsis thaliana putative shaggy kinase alpha (At5g26751) mRNA,
            complete cds
          Length = 1667

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 454  cctttcagttcgttaggcttgaagttaaaaag 485
            |||||||| |||| |||||||||||| |||||
Sbjct: 1388 cctttcagctcgtgaggcttgaagttgaaaag 1357
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>emb|AL591070.19| Mouse DNA sequence from clone RP23-185A18 on chromosome 11 Contains the
              3' end of a novel gene, Traf4 gene for Tnf receptor
              associated factor 4, the Nek8 gene for NIMA (never in
              mitosis gene a)-related expressed kinase 8, six novel
              genes, the Rpl23a gene for ribosomal protein L23a, the
              Rab34 gene for RAB34 member of RAS oncogene family, the
              Supt6h gene for suppressor of Ty 6 homolog (S. cerevisiae),
              the Sdf2 gene for stromal cell derived factor 2, the Spag5
              gene for sperm associated antigen 5, the Aldo3 gene for
              aldolase 3 C isoform, the Pigs gene for
              phosphatidylinositol glycan class S and the Unc119 gene for
              unc-119 homolog (C. elegans), complete sequence
          Length = 233242

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     aaggatcaactacaataaat 104
              ||||||||||||||||||||
Sbjct: 152030 aaggatcaactacaataaat 152011
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>emb|BX571835.9| Zebrafish DNA sequence from clone XX-114C19 in linkage group 25,
             complete sequence
          Length = 32786

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ataaatacattcatacttct 118
             ||||||||||||||||||||
Sbjct: 31330 ataaatacattcatacttct 31349
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>gb|AC113150.4| Homo sapiens BAC clone RP13-339P19 from 4, complete sequence
          Length = 98856

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 474 gaagttaaaaagaggaggcagaaa 497
           |||||||||||||||||| |||||
Sbjct: 922 gaagttaaaaagaggaggaagaaa 899
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>gb|AC092812.2| Homo sapiens chromosome 1 clone RP11-536F12, complete sequence
          Length = 160903

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    ttctctagaacatattacag 134
              ||||||||||||||||||||
Sbjct: 107488 ttctctagaacatattacag 107469
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>gb|AF428327.1|AF428327 Arabidopsis thaliana AT5g26750/F2P16_10 mRNA, complete cds
          Length = 1634

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 454  cctttcagttcgttaggcttgaagttaaaaag 485
            |||||||| |||| |||||||||||| |||||
Sbjct: 1388 cctttcagctcgtgaggcttgaagttgaaaag 1357
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>gb|AC141000.7| Homo sapiens 3 BAC RP11-480C15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 175946

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   catgcatgggagctctgctt 407
             ||||||||||||||||||||
Sbjct: 80470 catgcatgggagctctgctt 80451
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>emb|BX831446.1|CNS09YSF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS91ZE05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1638

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 454  cctttcagttcgttaggcttgaagttaaaaag 485
            |||||||| |||| |||||||||||| |||||
Sbjct: 1372 cctttcagctcgtgaggcttgaagttgaaaag 1341
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>gb|AC011737.10| Homo sapiens BAC clone RP11-33N4 from 2, complete sequence
          Length = 176709

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    cagatcagctatggcaatct 151
              ||||||||||||||||||||
Sbjct: 128508 cagatcagctatggcaatct 128489
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>gb|AC105287.5| Homo sapiens BAC clone RP11-313M11 from 4, complete sequence
          Length = 105001

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 474    gaagttaaaaagaggaggcagaaa 497
              |||||||||||||||||| |||||
Sbjct: 103923 gaagttaaaaagaggaggaagaaa 103900
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>gb|AC158187.2| Selaginella moellendorffii clone JGIASXY-5I19, complete sequence
          Length = 40590

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 522   cgggtcccgaagctcatcaaagaaggggtgaacaagtgcctcca 565
             |||||| || ||||||||||| || || || |||||||||||||
Sbjct: 24381 cgggtctcggagctcatcaaaaaacggatggacaagtgcctcca 24424
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>emb|AL954314.8| Zebrafish DNA sequence from clone XX-162M2 in linkage group 25,
             complete sequence
          Length = 81294

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    ataaatacattcatacttct 118
             ||||||||||||||||||||
Sbjct: 80751 ataaatacattcatacttct 80732
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>emb|Y18451.1|HSAP18451 Homo sapiens Bassoon (BSN) gene, exons 6 to 11
          Length = 6560

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 388  catgcatgggagctctgctt 407
            ||||||||||||||||||||
Sbjct: 3836 catgcatgggagctctgctt 3817
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>gb|AC004807.1|AC004807 Mus musculus chromosome 11, clone mCIT.268_P_23, complete sequence
          Length = 110970

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aaggatcaactacaataaat 104
             ||||||||||||||||||||
Sbjct: 16576 aaggatcaactacaataaat 16595


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,469,458
Number of Sequences: 3902068
Number of extensions: 4469458
Number of successful extensions: 81575
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81469
Number of HSP's gapped (non-prelim): 93
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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