ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23d12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_510687.1| PREDICTED: Pan troglodytes similar to high-mobility group 20A (LOC453766), mRNA Length = 1237 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 835 ccacctccagcttctccactgctg 812
>ref|NM_197489.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.5), mRNA Length = 841 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 186 ctgagcacgtttcatcttggcaaactcaacca 217 |||| |||| ||||||||||||||||| |||| Sbjct: 681 ctgaacacgcttcatcttggcaaactcgacca 650
>gb|AC102523.9| Mus musculus chromosome 15, clone RP24-184F9, complete sequence Length = 171422 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 aggagctccaggccacagag 329 |||||||||||||||||||| Sbjct: 12902 aggagctccaggccacagag 12921
>gb|BC021959.1| Homo sapiens high-mobility group 20A, mRNA (cDNA clone MGC:8813 IMAGE:3908842), complete cds Length = 3898 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 1009 ccacctccagcttctccactgctg 986
>gb|AF309380.1| Oryza sativa (japonica cultivar-group) clone C2421_1A putative glutathione S-transferase OsGSTU2 mRNA, partial cds Length = 867 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 186 ctgagcacgtttcatcttggcaaactcaacca 217 |||| |||| ||||||||||||||||| |||| Sbjct: 686 ctgaacacgcttcatcttggcaaactcgacca 655
>ref|XM_803419.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510235.10) partial mRNA Length = 10404 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 acgtcaatgtagccgacgtt 392 |||||||||||||||||||| Sbjct: 3113 acgtcaatgtagccgacgtt 3094
>emb|CR714599.2|CNS0GEC3 Tetraodon nigroviridis full-length cDNA Length = 883 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 caccaaagcgctccatccat 279 |||||||||||||||||||| Sbjct: 172 caccaaagcgctccatccat 153
>ref|NM_018200.2| Homo sapiens high-mobility group 20A (HMG20A), mRNA Length = 3898 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 1009 ccacctccagcttctccactgctg 986
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 186 ctgagcacgtttcatcttggcaaactcaacca 217 |||| |||| ||||||||||||||||| |||| Sbjct: 25635 ctgaacacgcttcatcttggcaaactcgacca 25666
>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence Length = 132900 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 186 ctgagcacgtttcatcttggcaaactcaacca 217 |||| |||| ||||||||||||||||| |||| Sbjct: 83936 ctgaacacgcttcatcttggcaaactcgacca 83967
>emb|AL355737.1|IRO548013 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 548013 Length = 3669 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 821 ccacctccagcttctccactgctg 798
>gb|BT007980.1| Synthetic construct Homo sapiens high-mobility group 20A mRNA, partial cds Length = 1044 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 808 ccacctccagcttctccactgctg 785
>gb|BT006716.1| Homo sapiens high-mobility group 20A mRNA, complete cds Length = 1044 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 808 ccacctccagcttctccactgctg 785
>emb|CR769774.8| Zebrafish DNA sequence from clone DKEY-149I17 in linkage group 2, complete sequence Length = 211636 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tgttttgacatctttcatgg 84 |||||||||||||||||||| Sbjct: 50693 tgttttgacatctttcatgg 50712
>gb|AF146222.1| Homo sapiens HMG domain protein HMGX1 (HMGX1) mRNA, complete cds Length = 3773 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 899 ccacctccagcttctccactgctg 876
>dbj|AK001601.1| Homo sapiens cDNA FLJ10739 fis, clone NT2RP3001472, weakly similar to NONHISTONE CHROMOSOMAL PROTEIN 6A Length = 3803 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 929 ccacctccagcttctccactgctg 906
>gb|DQ393784.1| Pseudomonas aeruginosa strain N2-1 class I integron, partial sequence Length = 5144 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccgatggcactccttccatg 106 |||||||||||||||||||| Sbjct: 2195 ccgatggcactccttccatg 2176
>gb|AC090984.5| Homo sapiens chromosome 15, clone RP11-500C12, complete sequence Length = 190664 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 153382 ccacctccagcttctccactgctg 153359
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 186 ctgagcacgtttcatcttggcaaactcaacca 217 |||| |||| ||||||||||||||||| |||| Sbjct: 20082555 ctgaacacgcttcatcttggcaaactcgacca 20082524
>dbj|AK223100.1| Homo sapiens mRNA for high-mobility group 20A variant, clone: KAT05402 Length = 1900 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 925 ccacctccagcttctccactgctg 902
>gb|AC093378.5| Homo sapiens BAC clone RP11-296O15 from 2, complete sequence Length = 63849 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 gactagattctgatcaatgt 550 |||||||||||||||||||| Sbjct: 53055 gactagattctgatcaatgt 53074
>gb|AY891624.1| Synthetic construct Homo sapiens clone FLH110896.01L high-mobility group 20A (HMG20A) mRNA, partial cds Length = 1044 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 808 ccacctccagcttctccactgctg 785
>gb|AY891623.1| Synthetic construct Homo sapiens clone FLH110895.01L high-mobility group 20A (HMG20A) mRNA, partial cds Length = 1044 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 808 ccacctccagcttctccactgctg 785
>gb|AY889043.1| Synthetic construct Homo sapiens clone FLH110899.01X high-mobility group 20A (HMG20A) mRNA, complete cds Length = 1044 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 808 ccacctccagcttctccactgctg 785
>gb|AY889042.1| Synthetic construct Homo sapiens clone FLH110898.01X high-mobility group 20A (HMG20A) mRNA, complete cds Length = 1044 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ccacctctagcttctccactgctg 460 ||||||| |||||||||||||||| Sbjct: 808 ccacctccagcttctccactgctg 785
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gcgccgatggcactccttcc 103 |||||||||||||||||||| Sbjct: 183481 gcgccgatggcactccttcc 183500
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 186 ctgagcacgtttcatcttggcaaactcaacca 217 |||| |||| ||||||||||||||||| |||| Sbjct: 20093831 ctgaacacgcttcatcttggcaaactcgacca 20093800
>emb|AL831714.14| Mouse DNA sequence from clone RP23-311D24 on chromosome 4, complete sequence Length = 120815 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tttgacatctttcatggcgc 87 |||||||||||||||||||| Sbjct: 30894 tttgacatctttcatggcgc 30913 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,168,524 Number of Sequences: 3902068 Number of extensions: 4168524 Number of successful extensions: 81679 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81615 Number of HSP's gapped (non-prelim): 64 length of query: 583 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 560 effective length of database: 17,143,297,704 effective search space: 9600246714240 effective search space used: 9600246714240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
