>ref|XM_469921.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1369

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 112/132 (84%), Gaps = 3/132 (2%)
 Strand = Plus / Minus

                                                                        
Query: 229  gacgccgccatggactcaacatggtggatctgccgaggagcaggacgaagccaaggaacg 288
            |||| ||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||
Sbjct: 1051 gacgacgccagggactcaacatggtggatctgtcgagcagcagtaggaagccaaggaacg 992

                                                                        
Query: 289  tggttgacaagccgaacgtatacctggtagtagagcttc---ttctccaaaagattacgg 345
            | |||||||  ||||| ||||||||||  || || ||||   |||||||||||||||  |
Sbjct: 991  tagttgacagaccgaaggtatacctggctgtggaacttctgtttctccaaaagattatcg 932

                        
Query: 346  agagcaaccact 357
            |||||| |||||
Sbjct: 931  agagcacccact 920

>gb|AY224542.1| Oryza sativa (japonica cultivar-group) isolate 23484 heavy
            meromyosin-like protein mRNA, complete cds
          Length = 1071

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 112/132 (84%), Gaps = 3/132 (2%)
 Strand = Plus / Minus

                                                                        
Query: 229  gacgccgccatggactcaacatggtggatctgccgaggagcaggacgaagccaaggaacg 288
            |||| ||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||
Sbjct: 1051 gacgacgccagggactcaacatggtggatctgtcgagcagcagtaggaagccaaggaacg 992

                                                                        
Query: 289  tggttgacaagccgaacgtatacctggtagtagagcttc---ttctccaaaagattacgg 345
            | |||||||  ||||| ||||||||||  || || ||||   |||||||||||||||  |
Sbjct: 991  tagttgacagaccgaaggtatacctggctgtggaacttctgtttctccaaaagattatcg 932

                        
Query: 346  agagcaaccact 357
            |||||| |||||
Sbjct: 931  agagcacccact 920

>dbj|AK071787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110P10, full
            insert sequence
          Length = 1524

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 112/132 (84%), Gaps = 3/132 (2%)
 Strand = Plus / Minus

                                                                        
Query: 229  gacgccgccatggactcaacatggtggatctgccgaggagcaggacgaagccaaggaacg 288
            |||| ||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||
Sbjct: 1206 gacgacgccagggactcaacatggtggatctgtcgagcagcagtaggaagccaaggaacg 1147

                                                                        
Query: 289  tggttgacaagccgaacgtatacctggtagtagagcttc---ttctccaaaagattacgg 345
            | |||||||  ||||| ||||||||||  || || ||||   |||||||||||||||  |
Sbjct: 1146 tagttgacagaccgaaggtatacctggctgtggaacttctgtttctccaaaagattatcg 1087

                        
Query: 346  agagcaaccact 357
            |||||| |||||
Sbjct: 1086 agagcacccact 1075

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                            
Query: 229      gacgccgccatggactcaacatggtggatctgccgaggagcaggacgaagccaaggaacg 288
                |||| ||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||
Sbjct: 32496989 gacgacgccagggactcaacatggtggatctgtcgagcagcagtaggaagccaaggaacg 32497048

                                          
Query: 289      tggttgacaagccgaacgtatacctg 314
                | |||||||  ||||| |||||||||
Sbjct: 32497049 tagttgacagaccgaaggtatacctg 32497074



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 637      agccgcgggacgccgaggccggcggcg 663
                |||||||||||| ||||||||||||||
Sbjct: 13754630 agccgcgggacggcgaggccggcggcg 13754604

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                            
Query: 229      gacgccgccatggactcaacatggtggatctgccgaggagcaggacgaagccaaggaacg 288
                |||| ||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||
Sbjct: 32587499 gacgacgccagggactcaacatggtggatctgtcgagcagcagtaggaagccaaggaacg 32587558

                                          
Query: 289      tggttgacaagccgaacgtatacctg 314
                | |||||||  ||||| |||||||||
Sbjct: 32587559 tagttgacagaccgaaggtatacctg 32587584



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 637      agccgcgggacgccgaggccggcggcg 663
                |||||||||||| ||||||||||||||
Sbjct: 13749605 agccgcgggacggcgaggccggcggcg 13749579

>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                         
Query: 229   gacgccgccatggactcaacatggtggatctgccgaggagcaggacgaagccaaggaacg 288
             |||| ||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||
Sbjct: 30438 gacgacgccagggactcaacatggtggatctgtcgagcagcagtaggaagccaaggaacg 30497

                                       
Query: 289   tggttgacaagccgaacgtatacctg 314
             | |||||||  ||||| |||||||||
Sbjct: 30498 tagttgacagaccgaaggtatacctg 30523

>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete
             sequence
          Length = 50000

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                         
Query: 229   gacgccgccatggactcaacatggtggatctgccgaggagcaggacgaagccaaggaacg 288
             |||||||||| ||||||||||  ||||||||| |||| ||||| | || |||||||||||
Sbjct: 13036 gacgccgccagggactcaacaacgtggatctgtcgagaagcagcaggaggccaaggaacg 13095

              
Query: 289   t 289
             |
Sbjct: 13096 t 13096



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 1     aagcctagcagtctcaataacacactatacagca 34
             |||||||| ||||| |||||||||||||||||||
Sbjct: 12817 aagcctagtagtctgaataacacactatacagca 12850

>gb|L48284.1|BLYSRP541R Hordeum vulgare signal recognition particle 54 kDa subunit
           (Srp54-1) mRNA, complete cds
          Length = 1732

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 567 gcgcgggtgatctcgttgaggcagtcgccgaggaccctctcgtcgacgaccgtggc 622
           ||||||| ||||||||||||||| || ||||| ||| |||||||||  ||||||||
Sbjct: 189 gcgcgggagatctcgttgaggcactccccgagcaccttctcgtcgatcaccgtggc 134

>gb|L48285.1|BLYSRP542R Hordeum vulgare signal recognition particle 54 kDa subunit
           (Srp54-2) mRNA, complete cds
          Length = 1856

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 567 gcgcgggtgatctcgttgaggcagtcgccgaggaccctctcgtcgacgaccgtggc 622
           ||||||| ||||||||||||||| || ||||| ||| |||||||||  ||||||||
Sbjct: 255 gcgcgggagatctcgttgaggcactccccgagcaccttctcgtcgatcaccgtggc 200

>ref|NM_191436.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1491

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 575 gatctcgttgaggcagtcgccgaggaccctctcgtcga 612
           |||||||||||||||||||| ||| ||| |||||||||
Sbjct: 105 gatctcgttgaggcagtcgctgagcaccttctcgtcga 68

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 575      gatctcgttgaggcagtcgccgaggaccctctcgtcga 612
                |||||||||||||||||||| ||| ||| |||||||||
Sbjct: 32646143 gatctcgttgaggcagtcgctgagcaccttctcgtcga 32646106

>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0695H10
          Length = 136883

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 575    gatctcgttgaggcagtcgccgaggaccctctcgtcga 612
              |||||||||||||||||||| ||| ||| |||||||||
Sbjct: 108938 gatctcgttgaggcagtcgctgagcaccttctcgtcga 108901

>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0490D09
          Length = 154430

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 575  gatctcgttgaggcagtcgccgaggaccctctcgtcga 612
            |||||||||||||||||||| ||| ||| |||||||||
Sbjct: 8938 gatctcgttgaggcagtcgctgagcaccttctcgtcga 8901

>dbj|AK120871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026D19, full
           insert sequence
          Length = 2038

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 575 gatctcgttgaggcagtcgccgaggaccctctcgtcga 612
           |||||||||||||||||||| ||| ||| |||||||||
Sbjct: 404 gatctcgttgaggcagtcgctgagcaccttctcgtcga 367

>dbj|AB114831.1| Oryza sativa (japonica cultivar-group) srp54-1 mRNA for signal
           recognition particle 54kDa subunit, complete cds
          Length = 1843

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 575 gatctcgttgaggcagtcgccgaggaccctctcgtcga 612
           |||||||||||||||||||| ||| ||| |||||||||
Sbjct: 262 gatctcgttgaggcagtcgctgagcaccttctcgtcga 225

>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0082F22, complete sequence
          Length = 176038

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 637    agccgcgggacgccgaggccggcggcg 663
              |||||||||||| ||||||||||||||
Sbjct: 116879 agccgcgggacggcgaggccggcggcg 116905

>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0048D11, from chromosome 3, complete sequence
          Length = 158911

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 637   agccgcgggacgccgaggccggcggcg 663
             |||||||||||| ||||||||||||||
Sbjct: 31158 agccgcgggacggcgaggccggcggcg 31132

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 637      agccgcgggacgccgaggccggcggcg 663
                |||||||||||| ||||||||||||||
Sbjct: 13154102 agccgcgggacggcgaggccggcggcg 13154128

>dbj|AK109711.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H01, full
           insert sequence
          Length = 1491

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 637 agccgcgggacgccgaggccggcggcg 663
           |||||||||||| ||||||||||||||
Sbjct: 942 agccgcgggacggcgaggccggcggcg 968

>emb|CR753837.14| Zebrafish DNA sequence from clone DKEY-234K7 in linkage group 5,
             complete sequence
          Length = 135495

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 16    aataacacactatacagcaagctca 40
             |||||||||||||||| ||||||||
Sbjct: 10474 aataacacactatacatcaagctca 10498



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 16   aataacacactatacagcaagctca 40
            |||||||||||||||| ||||||||
Sbjct: 1382 aataacacactatacatcaagctca 1406

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 218     tggccgatgcggacgccgccatgga 242
               |||||| ||||||||||||||||||
Sbjct: 3244489 tggccggtgcggacgccgccatgga 3244513

>emb|BX649559.12| Zebrafish DNA sequence from clone DKEY-33C3 in linkage group 3,
             complete sequence
          Length = 143056

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 16    aataacacactatacagcaagctca 40
             |||||||||||||||| ||||||||
Sbjct: 25552 aataacacactatacatcaagctca 25576

>gb|AC090872.1|AC090872 Drosophila melanogaster, chromosome 2L, region 36B-36C, BAC clone
            BACR06G19, complete sequence
          Length = 178481

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 264  aggagcaggacgaagccaagg 284
            |||||||||||||||||||||
Sbjct: 9394 aggagcaggacgaagccaagg 9374

>gb|AC009250.3|AC009250 Drosophila melanogaster, chromosome 2L, region 36B-36B, BAC clone
             BACR27M18, complete sequence
          Length = 170362

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   aggagcaggacgaagccaagg 284
             |||||||||||||||||||||
Sbjct: 19836 aggagcaggacgaagccaagg 19856

>gb|AE003653.3| Drosophila melanogaster chromosome 2L, section 62 of 83 of the complete
             sequence
          Length = 247634

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 264   aggagcaggacgaagccaagg 284
             |||||||||||||||||||||
Sbjct: 69524 aggagcaggacgaagccaagg 69504

>emb|BX255908.4| Zebrafish DNA sequence from clone CH211-250O16 in linkage group 5,
              complete sequence
          Length = 121726

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 16     aataacacactatacagcaagctca 40
              |||||||||||||||| ||||||||
Sbjct: 121108 aataacacactatacatcaagctca 121132

>gb|BT025489.1| Bos taurus zinc finger protein 36, C3H type-like 2 (ZFP36L2), mRNA,
            incomplete 3' cds
          Length = 1239

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 260  gccgaggagcaggacgaagc 279
            ||||||||||||||||||||
Sbjct: 1199 gccgaggagcaggacgaagc 1180

>emb|AL592164.6| Human DNA sequence from clone RP13-126P21 on chromosome X Contains a
             ribosomal protein S11 (RPS11) pseudogene and a CpG island,
             complete sequence
          Length = 124687

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    caataacacactatacagca 34
             ||||||||||||||||||||
Sbjct: 59453 caataacacactatacagca 59472

>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 260     gccgaggagcaggacgaagc 279
               ||||||||||||||||||||
Sbjct: 1087684 gccgaggagcaggacgaagc 1087703

>gb|L48286.1|BLYSRP543R Hordeum vulgare Srp54-2 mRNA, complete sequence; and signal
           recognition particle 54 kDa subunit (Srp 54-3) mRNA,
           complete cds
          Length = 1707

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 575 gatctcgttgaggcagtcgccgaggaccctctcgtcgacgaccg 618
           ||||||||||||||| || | ||| || ||||||||||| ||||
Sbjct: 122 gatctcgttgaggcactcccggagcacgctctcgtcgaccaccg 79

>emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in linkage group 23,
              complete sequence
          Length = 171486

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    actactgttacttctgtttt 386
              ||||||||||||||||||||
Sbjct: 138437 actactgttacttctgtttt 138456

>gb|AC010163.8| Homo sapiens chromosome 10 clone RP11-90J7, complete sequence
          Length = 157069

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 528   agatgatgcaggagtaaggg 547
             ||||||||||||||||||||
Sbjct: 46692 agatgatgcaggagtaaggg 46673

>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    ctgtggccgatgcggacgcc 234
              ||||||||||||||||||||
Sbjct: 353309 ctgtggccgatgcggacgcc 353290

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 644     ggacgccgaggccggcggcg 663
               ||||||||||||||||||||
Sbjct: 2638643 ggacgccgaggccggcggcg 2638662


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,477,949
Number of Sequences: 3902068
Number of extensions: 5477949
Number of successful extensions: 102668
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102102
Number of HSP's gapped (non-prelim): 563
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)