ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22o11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RNZ1_HUMAN (Q9H777) Zinc phosphodiesterase ELAC protein 1 (EC 3.... 32 1.1
2RNZ1_MOUSE (Q8VEB6) Zinc phosphodiesterase ELAC protein 1 (EC 3.... 32 1.1
3SPS_SOLTU (Q43845) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 30 5.6

>RNZ1_HUMAN (Q9H777) Zinc phosphodiesterase ELAC protein 1 (EC 3.1.26.11)|
           (Ribonuclease Z 1) (RNase Z 1) (tRNase Z 1) (tRNA 3
           endonuclease 1) (ElaC homolog protein 1) (Deleted in
           Ma29)
          Length = 363

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 343 PTSKATCIILLCQVECHDFDCSNGART 423
           PT  A+ ++L C+ EC  FDC  G +T
Sbjct: 17  PTRGASAVVLRCEGECWLFDCGEGTQT 43



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>RNZ1_MOUSE (Q8VEB6) Zinc phosphodiesterase ELAC protein 1 (EC 3.1.26.11)|
           (Ribonuclease Z 1) (RNase Z 1) (tRNase Z 1) (tRNA 3
           endonuclease 1) (ElaC homolog protein 1)
          Length = 362

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 343 PTSKATCIILLCQVECHDFDCSNGART 423
           PT  A+ ++L C+ EC  FDC  G +T
Sbjct: 17  PTRGASAVVLRCEGECWLFDCGEGTQT 43



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>SPS_SOLTU (Q43845) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1053

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 325  CKPSYDPTSKATCIILLCQ-VECHDFDCSNGARTNNCP 435
            CKP   P SK    ++  Q + CH   C NG+R N  P
Sbjct: 914  CKPGTVPPSKELRKVMRIQALRCHAVYCQNGSRINVIP 951


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,900,893
Number of Sequences: 219361
Number of extensions: 1464314
Number of successful extensions: 2992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2990
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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