ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22o11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 9e-49
2dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 9e-49
3dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 9e-49
4dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 9e-49
5dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 9e-49
6gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence 161 3e-36
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
8dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
9ref|XM_467454.1| Oryza sativa (japonica cultivar-group), mRNA 74 5e-10
10dbj|AK107036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
12dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
13gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, comple... 44 0.47
14emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.8
15gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence 40 7.3
16gb|AC118010.11| Mus musculus chromosome 5, clone RP23-451E8, com... 40 7.3
17gb|BC076559.1| Danio rerio zgc:92474, mRNA (cDNA clone MGC:92474... 40 7.3
18gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, co... 40 7.3
19emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, com... 40 7.3
20gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 7.3
21gb|AC144826.2| Danio rerio clone CH211-20C7, complete sequence 40 7.3
22emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 i... 40 7.3
23gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Canc... 40 7.3
24gb|AC090916.3| Homo sapiens chromosome 18, clone RP11-862C6, com... 40 7.3
25emb|AJ586081.1| Selago atherstonei chloroplast trnT-trnL interge... 40 7.3
26emb|AJ586077.1| Selago villosa chloroplast trnT-trnL intergenic ... 40 7.3
27emb|AJ586073.1| Selago foliosa chloroplast trnT-trnL intergenic ... 40 7.3
28gb|AC046202.5| Homo sapiens chromosome 18, clone RP11-318I15, co... 40 7.3
29gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome... 40 7.3
30gb|AC073050.5| Homo sapiens BAC clone RP11-70E4 from 2, complete... 40 7.3
31ref|NM_001002644.1| Danio rerio zgc:92474 (zgc:92474), mRNA 40 7.3
32emb|CR925760.12| Zebrafish DNA sequence from clone DKEYP-89A8 in... 40 7.3
33gb|AC153617.3| Mus musculus 6 BAC RP23-177G20 (Roswell Park Canc... 40 7.3
34emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chr... 40 7.3 
>dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048O14, full
            insert sequence
          Length = 2267

 Score =  202 bits (102), Expect = 9e-49
 Identities = 131/141 (92%)
 Strand = Plus / Minus

                                                                        
Query: 397  tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 456
            ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 1880 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 1821

                                                                        
Query: 457  gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 516
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1820 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 1761

                                 
Query: 517  caaggattatctagttgntca 537
            |||||||| |||||||| |||
Sbjct: 1760 caaggattgtctagttgctca 1740



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 117  aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 155
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 2174 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 2135
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>dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P10, full
            insert sequence
          Length = 2308

 Score =  202 bits (102), Expect = 9e-49
 Identities = 131/141 (92%)
 Strand = Plus / Minus

                                                                        
Query: 397  tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 456
            ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 1823 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 1764

                                                                        
Query: 457  gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 516
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1763 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 1704

                                 
Query: 517  caaggattatctagttgntca 537
            |||||||| |||||||| |||
Sbjct: 1703 caaggattgtctagttgctca 1683



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 117  aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 155
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 2117 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 2078
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>dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020C22, full
            insert sequence
          Length = 2286

 Score =  202 bits (102), Expect = 9e-49
 Identities = 131/141 (92%)
 Strand = Plus / Minus

                                                                        
Query: 397  tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 456
            ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 1839 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 1780

                                                                        
Query: 457  gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 516
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1779 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 1720

                                 
Query: 517  caaggattatctagttgntca 537
            |||||||| |||||||| |||
Sbjct: 1719 caaggattgtctagttgctca 1699



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 117  aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 155
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 2133 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 2094
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>dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P16, full
           insert sequence
          Length = 1255

 Score =  202 bits (102), Expect = 9e-49
 Identities = 131/141 (92%)
 Strand = Plus / Minus

                                                                       
Query: 397 tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 456
           ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 802 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 743

                                                                       
Query: 457 gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 516
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 742 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 683

                                
Query: 517 caaggattatctagttgntca 537
           |||||||| |||||||| |||
Sbjct: 682 caaggattgtctagttgctca 662



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 117  aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 155
            ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 1096 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 1057
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>dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B09, full
           insert sequence
          Length = 1331

 Score =  202 bits (102), Expect = 9e-49
 Identities = 131/141 (92%)
 Strand = Plus / Minus

                                                                       
Query: 397 tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 456
           ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 999 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 940

                                                                       
Query: 457 gtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccc 516
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 939 gtttgatgaggatcaatgcgggagggcaaactaataaccttcttgaatggagtaacaccc 880

                                
Query: 517 caaggattatctagttgntca 537
           |||||||| |||||||| |||
Sbjct: 879 caaggattgtctagttgctca 859
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>gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence
          Length = 1263

 Score =  161 bits (81), Expect = 3e-36
 Identities = 120/133 (90%)
 Strand = Plus / Minus

                                                                       
Query: 395 attttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctg 454
           ||||||| || |||||||||||||| |||||||  ||||||||||| ||||||||||| |
Sbjct: 805 attttgattgttcaaatggtgcacgcacaaatagctgcccatggagggtgacaactgcgg 746

                                                                       
Query: 455 aggtttgatgaggatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacac 514
           ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 745 aggtttggtgagggtcaatgcgggaaggcaaactaatgaccttcttgaatggagtgacac 686

                        
Query: 515 cccaaggattatc 527
           |||| || |||||
Sbjct: 685 cccatgggttatc 673
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  135 bits (68), Expect = 2e-28
 Identities = 92/100 (92%)
 Strand = Plus / Minus

                                                                            
Query: 397      tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 456
                ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 24635304 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 24635245

                                                        
Query: 457      gtttgatgaggatcaatgcgggagggcaaactaatgacct 496
                ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24635244 gtttgatgaggatcaatgcgggagggcaaactaataacct 24635205



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                              
Query: 492      gaccttcttgaatggagtaacaccccaaggattatctagttgntca 537
                ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 24635121 gaccttcttgaatggagtaacaccccaaggattgtctagttgctca 24635076



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                        
Query: 117      aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 155
                ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 24635965 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 24635926
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>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0040H10
          Length = 173301

 Score =  135 bits (68), Expect = 2e-28
 Identities = 92/100 (92%)
 Strand = Plus / Minus

                                                                          
Query: 397    tttgactgctcaaatggtgcacgaacaaataattgcccatggagagtgacaactgctgag 456
              ||||||||||| ||||||||||| |||||||  || |||||||||||||||||||| || 
Sbjct: 118497 tttgactgctcgaatggtgcacggacaaatagctgtccatggagagtgacaactgccgaa 118438

                                                      
Query: 457    gtttgatgaggatcaatgcgggagggcaaactaatgacct 496
              ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 118437 gtttgatgaggatcaatgcgggagggcaaactaataacct 118398



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                            
Query: 492    gaccttcttgaatggagtaacaccccaaggattatctagttgntca 537
              ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 118314 gaccttcttgaatggagtaacaccccaaggattgtctagttgctca 118269



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 36/40 (90%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                      
Query: 117    aaaaaggaacaaataaaccatgaacat-ttgagcatcagg 155
              ||||||||| ||| ||||||||||||| || |||||||||
Sbjct: 119158 aaaaaggaagaaagaaaccatgaacatgtttagcatcagg 119119
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>ref|XM_467454.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2072

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 100/121 (82%)
 Strand = Plus / Minus

                                                                        
Query: 407  caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 466
            ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 1565 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 1506

                                                                        
Query: 467  gatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccccaaggattat 526
            |||| || |   | |||| | | |  ||||||||||||||||| |  |||||||||||||
Sbjct: 1505 gatcgatcctcaatggcagattgaccaccttcttgaatggagtgatcccccaaggattat 1446

             
Query: 527  c 527
            |
Sbjct: 1445 c 1445
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>dbj|AK107036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B09, full
            insert sequence
          Length = 2072

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 100/121 (82%)
 Strand = Plus / Minus

                                                                        
Query: 407  caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 466
            ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 1565 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 1506

                                                                        
Query: 467  gatcaatgcgggagggcaaactaatgaccttcttgaatggagtaacaccccaaggattat 526
            |||| || |   | |||| | | |  ||||||||||||||||| |  |||||||||||||
Sbjct: 1505 gatcgatcctcaatggcagattgaccaccttcttgaatggagtgatcccccaaggattat 1446

             
Query: 527  c 527
            |
Sbjct: 1445 c 1445
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                            
Query: 407      caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 466
                ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 29630241 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 29630300

                    
Query: 467      gatc 470
                ||||
Sbjct: 29630301 gatc 29630304



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 493      accttcttgaatggagtaacaccccaaggattatc 527
                ||||||||||||||||| |  ||||||||||||||
Sbjct: 29630406 accttcttgaatggagtgatcccccaaggattatc 29630440
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>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1479_B12
          Length = 127089

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 407   caaatggtgcacgaacaaataattgcccatggagagtgacaactgctgaggtttgatgag 466
             ||||||||||||||||||||| ||| ||||| || |||||||| || || ||||||||||
Sbjct: 87962 caaatggtgcacgaacaaatagttggccatgaagcgtgacaacggcggatgtttgatgag 88021

                 
Query: 467   gatc 470
             ||||
Sbjct: 88022 gatc 88025



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 493   accttcttgaatggagtaacaccccaaggattatc 527
             ||||||||||||||||| |  ||||||||||||||
Sbjct: 88127 accttcttgaatggagtgatcccccaaggattatc 88161
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>gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, complete sequence
          Length = 177716

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 374    tttgtcaagtagagtgtcatgatttt 399
              ||||||||||||| ||||||||||||
Sbjct: 111711 tttgtcaagtagactgtcatgatttt 111736
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>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 449    ctgctgaggtttgatgaggatcaat 473
              |||||||||||||||| ||||||||
Sbjct: 112206 ctgctgaggtttgatgcggatcaat 112182
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>gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence
          Length = 1830

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 493  accttcttgaatggagt-aacaccccaaggattatc 527
            ||||||||||||||||| | | ||||||||||||||
Sbjct: 1637 accttcttgaatggagtgatccccccaaggattatc 1602
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>gb|AC118010.11| Mus musculus chromosome 5, clone RP23-451E8, complete sequence
          Length = 184672

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    tattaggaataaagctacaa 82
             ||||||||||||||||||||
Sbjct: 57450 tattaggaataaagctacaa 57431
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>gb|BC076559.1| Danio rerio zgc:92474, mRNA (cDNA clone MGC:92474 IMAGE:7044589),
            complete cds
          Length = 2575

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 228  aattagttagaattaatcaataca 251
            |||||||||||||| |||||||||
Sbjct: 2447 aattagttagaattgatcaataca 2470
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>gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, complete sequence
          Length = 184265

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 122   ggaacaaataaaccatgaacatttgagcatca 153
             ||||||||||||||| | ||| ||||||||||
Sbjct: 45048 ggaacaaataaaccaaggacaattgagcatca 45079
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>emb|CR974413.1| M.murinus DNA sequence from clone CH257-4B4, complete sequence
          Length = 270722

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    atgaacatttgagcatcagg 155
              ||||||||||||||||||||
Sbjct: 142128 atgaacatttgagcatcagg 142109
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 129     ataaaccatgaacatttgagcatc 152
               |||||||| |||||||||||||||
Sbjct: 2150103 ataaaccaagaacatttgagcatc 2150080
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>gb|AC144826.2| Danio rerio clone CH211-20C7, complete sequence
          Length = 163056

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    ttagaattaatcaatacaca 253
              ||||||||||||||||||||
Sbjct: 141207 ttagaattaatcaatacaca 141188
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>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
             complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    acactacaaatcatcatcct 101
             ||||||||||||||||||||
Sbjct: 33694 acactacaaatcatcatcct 33713
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>gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 219861

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    aaaggaacaaataaaccatg 138
              ||||||||||||||||||||
Sbjct: 146130 aaaggaacaaataaaccatg 146111
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>gb|AC090916.3| Homo sapiens chromosome 18, clone RP11-862C6, complete sequence
          Length = 197963

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     atgacaaactcaaagtatta 67
              ||||||||||||||||||||
Sbjct: 113417 atgacaaactcaaagtatta 113398
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>emb|AJ586081.1| Selago atherstonei chloroplast trnT-trnL intergenic spacer, trnL
           gene, and trnL-trnF intergenic spacer, specimen voucher
           Bremer  4319 (UPS)
          Length = 1758

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 tctaattagttagaattaat 244
           ||||||||||||||||||||
Sbjct: 486 tctaattagttagaattaat 467
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>emb|AJ586077.1| Selago villosa chloroplast trnT-trnL intergenic spacer, trnL gene,
           and trnL-trnF intergenic spacer, specimen voucher
           Hilliard & Burtt 18503 (S)
          Length = 1736

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 tctaattagttagaattaat 244
           ||||||||||||||||||||
Sbjct: 465 tctaattagttagaattaat 446
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>emb|AJ586073.1| Selago foliosa chloroplast trnT-trnL intergenic spacer, trnL gene,
           and trnL-trnF intergenic spacer, specimen voucher Bremer
           3816 (UPS)
          Length = 1700

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 tctaattagttagaattaat 244
           ||||||||||||||||||||
Sbjct: 428 tctaattagttagaattaat 409
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>gb|AC046202.5| Homo sapiens chromosome 18, clone RP11-318I15, complete sequence
          Length = 179210

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   atgacaaactcaaagtatta 67
            ||||||||||||||||||||
Sbjct: 9045 atgacaaactcaaagtatta 9064
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>gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome 9, complete sequence
          Length = 216124

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     aatcatcatcctttgatggt 109
              ||||||||||||||||||||
Sbjct: 158746 aatcatcatcctttgatggt 158765
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>gb|AC073050.5| Homo sapiens BAC clone RP11-70E4 from 2, complete sequence
          Length = 135586

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   tcccaccagcaaggcaacat 361
             ||||||||||||||||||||
Sbjct: 22798 tcccaccagcaaggcaacat 22779
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>ref|NM_001002644.1| Danio rerio zgc:92474 (zgc:92474), mRNA
          Length = 2575

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 228  aattagttagaattaatcaataca 251
            |||||||||||||| |||||||||
Sbjct: 2447 aattagttagaattgatcaataca 2470
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>emb|CR925760.12| Zebrafish DNA sequence from clone DKEYP-89A8 in linkage group 10,
            complete sequence
          Length = 122664

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  ttagaattaatcaatacaca 253
            ||||||||||||||||||||
Sbjct: 8591 ttagaattaatcaatacaca 8610
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>gb|AC153617.3| Mus musculus 6 BAC RP23-177G20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199525

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   gttaaaccgaaaaaggaacaaata 131
             |||||||| |||||||||||||||
Sbjct: 77016 gttaaacctaaaaaggaacaaata 76993
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>emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chromosome 4, complete
             sequence
          Length = 201246

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   catctaattagttagaattaatca 246
             |||||||||| |||||||||||||
Sbjct: 27751 catctaattaattagaattaatca 27728


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,408,873
Number of Sequences: 3902068
Number of extensions: 4408873
Number of successful extensions: 81034
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80883
Number of HSP's gapped (non-prelim): 151
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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