>gb|BT009278.1| Triticum aestivum clone wlk8.pk0020.a11:fis, full insert mRNA
           sequence
          Length = 1098

 Score =  242 bits (122), Expect = 6e-61
 Identities = 200/225 (88%), Gaps = 1/225 (0%)
 Strand = Plus / Minus

                                                                       
Query: 84  ttcatttcctacctgggggaaacagagctacttctcgccatccttgncatcgtccccggt 143
           ||||||||||||||| ||||| |||||||||||||||||||||||| | |||   | |||
Sbjct: 870 ttcatttcctacctgcgggaa-cagagctacttctcgccatccttgtcgtcgctgctggt 812

                                                                       
Query: 144 tgtcgccggtccatcaccgtcatctttgacatgtgagaagtgggatttgagcccgatcca 203
           |||||| ||||| |||| | |||||||| | || ||||||||||||||||||||||||||
Sbjct: 811 tgtcgcaggtccgtcactgccatctttgccgtgggagaagtgggatttgagcccgatcca 752

                                                                       
Query: 204 gcactggtagtagtccagatcccgggacggcgactccagagcccagcggcacacgcgcgg 263
            |||||||||||||| || ||||||||||| ||||| || ||||||||||||||||| ||
Sbjct: 751 acactggtagtagtcgaggtcccgggacggtgactcgagcgcccagcggcacacgcgtgg 692

                                                        
Query: 264 gatcagcgccgactcaaacatgaaggccagagtgccgctcagcct 308
           ||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 691 gatcagcgcagactcgaacatgaaggccagcgtgccgctcagcct 647



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 16  attactgtttgttttctccctttacacaagtaacaactagtatacatacat 66
           |||| |||||| |||||||||||||||| ||||| | ||||||||||||||
Sbjct: 938 attaatgtttgctttctccctttacacaggtaactagtagtatacatacat 888

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 111/136 (81%)
 Strand = Plus / Plus

                                                                          
Query: 173    catgtgagaagtgggatttgagcccgatccagcactggtagtagtccagatcccgggacg 232
              ||||||||||||||||||| |  || ||||||||||||||||| || ||||||||||| |
Sbjct: 214442 catgtgagaagtgggatttcaatccaatccagcactggtagtaatcgagatcccgggatg 214501

                                                                          
Query: 233    gcgactccagagcccagcggcacacgcgcgggatcagcgccgactcaaacatgaaggcca 292
              | || || || |||||  |||| || |  ||||| || || ||||| |||||||| || |
Sbjct: 214502 gggaatcgagggcccattggcaaaccctggggatgagtgcagactcgaacatgaatgcaa 214561

                              
Query: 293    gagtgccgctcagcct 308
              | |||||||| |||||
Sbjct: 214562 gcgtgccgcttagcct 214577

>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0075G19
          Length = 163558

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 111/136 (81%)
 Strand = Plus / Plus

                                                                         
Query: 173   catgtgagaagtgggatttgagcccgatccagcactggtagtagtccagatcccgggacg 232
             ||||||||||||||||||| |  || ||||||||||||||||| || ||||||||||| |
Sbjct: 79338 catgtgagaagtgggatttcaatccaatccagcactggtagtaatcgagatcccgggatg 79397

                                                                         
Query: 233   gcgactccagagcccagcggcacacgcgcgggatcagcgccgactcaaacatgaaggcca 292
             | || || || |||||  |||| || |  ||||| || || ||||| |||||||| || |
Sbjct: 79398 gggaatcgagggcccattggcaaaccctggggatgagtgcagactcgaacatgaatgcaa 79457

                             
Query: 293   gagtgccgctcagcct 308
             | |||||||| |||||
Sbjct: 79458 gcgtgccgcttagcct 79473

>dbj|AK062144.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-G08, full
           insert sequence
          Length = 1244

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                       
Query: 173 catgtgagaagtgggatttgagcccgatccagcactggtagtagtccagatcccgggacg 232
           ||||||||||||||||||| |  || ||||||||||||||||| || ||||||||||| |
Sbjct: 946 catgtgagaagtgggatttcaatccaatccagcactggtagtaatcgagatcccgggatg 887

                                                                       
Query: 233 gcgactccagagcccagcggcacacgcgcgggatcagcgccgactcaaacatgaaggcca 292
           | || || || |||||  |||| || |  ||||| || || ||||| |||||||| || |
Sbjct: 886 gggaatcgagggcccattggcaaaccctggggatgagtgcagactcgaacatgaatgcaa 827

                           
Query: 293 gagtgccgctcagcct 308
           | |||||||| |||||
Sbjct: 826 gcgtgccgcttagcct 811

>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0681G01, complete sequence
          Length = 184118

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 111/136 (81%)
 Strand = Plus / Minus

                                                                        
Query: 173  catgtgagaagtgggatttgagcccgatccagcactggtagtagtccagatcccgggacg 232
            ||||||||||||||||||| |  || ||||||||||||||||| || ||||||||||| |
Sbjct: 6100 catgtgagaagtgggatttcaatccaatccagcactggtagtaatcgagatcccgggatg 6041

                                                                        
Query: 233  gcgactccagagcccagcggcacacgcgcgggatcagcgccgactcaaacatgaaggcca 292
            | || || || |||||  |||| || |  ||||| || || ||||| |||||||| || |
Sbjct: 6040 gggaatcgagggcccattggcaaaccctggggatgagtgcagactcgaacatgaatgcaa 5981

                            
Query: 293  gagtgccgctcagcct 308
            | |||||||| |||||
Sbjct: 5980 gcgtgccgcttagcct 5965

>dbj|AK065189.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E07, full
            insert sequence
          Length = 1749

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                      
Query: 173  catgtgagaagtgggatttgagcccgatccagcactggtagtagtccagatcccggga 230
            ||||||||||||||||||| |  || ||||||||||||||||| || |||||||||||
Sbjct: 1451 catgtgagaagtgggatttcaatccaatccagcactggtagtaatcgagatcccggga 1394

>dbj|AP002370.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-160H12, complete
             sequence
          Length = 174697

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 164   catctttgacatgtgagaagtggg 187
             ||||||||||||||||||||||||
Sbjct: 53648 catctttgacatgtgagaagtggg 53671

>dbj|AP000773.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-97P20, complete
              sequences
          Length = 170434

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 164    catctttgacatgtgagaagtggg 187
              ||||||||||||||||||||||||
Sbjct: 148454 catctttgacatgtgagaagtggg 148477

>emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chromosome 17, complete
              sequence
          Length = 201723

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 29     ttctccctttacacaagtaacaac 52
              ||||||||||||||||||||||||
Sbjct: 193762 ttctccctttacacaagtaacaac 193739

>ref|NM_180856.2| Arabidopsis thaliana HGO (HOMOGENTISATE 1,2-DIOXYGENASE);
            homogentisate 1,2-dioxygenase AT5G54080 (HGO) transcript
            variant AT5G54080.1 mRNA, complete cds
          Length = 1651

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 190  ttgagcccgatccagcactggtagtagtccagatcccgggacggcgactccagagccca 248
            ||||| || ||||| ||||||||||||||  ||||| || | || ||||||||||||||
Sbjct: 1361 ttgaggccaatccaacactggtagtagtcgtgatccaggaaaggagactccagagccca 1303

>ref|NM_124787.3| Arabidopsis thaliana HGO (HOMOGENTISATE 1,2-DIOXYGENASE);
            homogentisate 1,2-dioxygenase AT5G54080 (HGO) transcript
            variant AT5G54080.2 mRNA, complete cds
          Length = 2181

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 190  ttgagcccgatccagcactggtagtagtccagatcccgggacggcgactccagagccca 248
            ||||| || ||||| ||||||||||||||  ||||| || | || ||||||||||||||
Sbjct: 1361 ttgaggccaatccaacactggtagtagtcgtgatccaggaaaggagactccagagccca 1303

>ref|NM_124788.2| Arabidopsis thaliana ATP binding / damaged DNA binding AT5G54090
            mRNA, complete cds
          Length = 2788

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 190  ttgagcccgatccagcactggtagtagtccagatcccgggacggcgactccagagccca 248
            ||||| || ||||| ||||||||||||||  ||||| || | || ||||||||||||||
Sbjct: 2677 ttgaggccaatccaacactggtagtagtcgtgatccaggaaaggagactccagagccca 2735

>gb|BT010329.1| Arabidopsis thaliana At5g54080 mRNA, complete cds
          Length = 1386

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 190  ttgagcccgatccagcactggtagtagtccagatcccgggacggcgactccagagccca 248
            ||||| || ||||| ||||||||||||||  ||||| || | || ||||||||||||||
Sbjct: 1310 ttgaggccaatccaacactggtagtagtcgtgatccaggaaaggagactccagagccca 1252

>gb|AY140075.1| Arabidopsis thaliana homogentisate 1,2-dioxygenase (At5g54080) mRNA,
            complete cds
          Length = 2160

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 190  ttgagcccgatccagcactggtagtagtccagatcccgggacggcgactccagagccca 248
            ||||| || ||||| ||||||||||||||  ||||| || | || ||||||||||||||
Sbjct: 1341 ttgaggccaatccaacactggtagtagtcgtgatccaggaaaggagactccagagccca 1283

>emb|BX829691.1|CNS0A04G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB2ZD10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1557

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 190  ttgagcccgatccagcactggtagtagtccagatcccgggacggcgactccagagccca 248
            ||||| || ||||| ||||||||||||||  ||||| || | || ||||||||||||||
Sbjct: 1361 ttgaggccaatccaacactggtagtagtcgtgatccaggaaaggagactccagagccca 1303

>gb|AY088421.1| Arabidopsis thaliana clone 6599 mRNA, complete sequence
          Length = 1631

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 190  ttgagcccgatccagcactggtagtagtccagatcccgggacggcgactccagagccca 248
            ||||| || ||||| ||||||||||||||  ||||| || | || ||||||||||||||
Sbjct: 1339 ttgaggccaatccaacactggtagtagtcgtgatccaggaaaggagactccagagccca 1281

>dbj|AB018115.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJP23
          Length = 31827

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 190   ttgagcccgatccagcactggtagtagtccagatcccgggacggcgactccagagccca 248
             ||||| || ||||| ||||||||||||||  ||||| || | || ||||||||||||||
Sbjct: 13892 ttgaggccaatccaacactggtagtagtcgtgatccaggaaaggagactccagagccca 13834

>gb|AF130845.1|AF130845 Arabidopsis thaliana homogentisate 1,2-dioxygenase (HGO) gene,
            complete cds
          Length = 2200

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 190  ttgagcccgatccagcactggtagtagtccagatcccgggacggcgactccagagccca 248
            ||||| || ||||| ||||||||||||||  ||||| || | || ||||||||||||||
Sbjct: 2092 ttgaggccaatccaacactggtagtagtcgtgatccaggaaaggagactccagagccca 2034

>emb|AL034429.1|HS894K16 Human DNA sequence from clone RP5-894K16 on chromosome 20q113.11-13.13
             Contains the COX6CP2 gene for cytochrome c oxidase subunit
             VIc pseudogene 2, the 5' end of the PTPN1 gene for protein
             tyrosine phosphatase, non-receptor type 1 (EC 3.1.3.48)
             and a CpG island, complete sequence
          Length = 131607

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 30    tctccctttacacaagtaacaa 51
             ||||||||||||||||||||||
Sbjct: 28687 tctccctttacacaagtaacaa 28708

>emb|AL935187.13| Zebrafish DNA sequence from clone DKEY-97C7 in linkage group 4 Contains
             part of the gene for a novel protein similar to vertebrate
             atrophin-1 interacting protein (AIP1) and a CpG island,
             complete sequence
          Length = 263517

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    tactgcattactgtttgtttt 30
             |||||||||||||||||||||
Sbjct: 74031 tactgcattactgtttgtttt 74051

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     ccggtccatcaccgtcatct 168
               ||||||||||||||||||||
Sbjct: 3813904 ccggtccatcaccgtcatct 3813885

>gb|AY623117.1| Homo sapiens RAD54-like (S. cerevisiae) (RAD54L) gene, complete cds
          Length = 33796

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   aaacatgaaggccagagtgc 298
             ||||||||||||||||||||
Sbjct: 28656 aaacatgaaggccagagtgc 28637

>gb|DQ180962.1| Erwinia pyrifoliae hrp gene cluster, partial sequence; and unknown
             genes
          Length = 28886

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   cccgatccagcactggtagt 214
             ||||||||||||||||||||
Sbjct: 22332 cccgatccagcactggtagt 22313

>emb|AJ583516.1| Mycobacterium bovis spoligotype 13, showing 1795bp deletion
           compared to Mycobacterium tuberculosis H37Rv, UK isolate
          Length = 1746

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 ccggtccatcaccgtcatct 168
           ||||||||||||||||||||
Sbjct: 67  ccggtccatcaccgtcatct 48

>gb|AC102792.7| Mus musculus chromosome 7, clone RP23-370I17, complete sequence
          Length = 215999

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  ctcaaacatgaaggccagag 295
            ||||||||||||||||||||
Sbjct: 1953 ctcaaacatgaaggccagag 1934

>emb|AL121602.34|HSDJ636H5 Human DNA sequence from clone RP4-636H5 on chromosome 1 Contains the
             RAD54L gene for RAD54-like (S. cerevisiae), the 3' end of
             the gene for MUF1 protein (MUF1) and a CpG island,
             complete sequence
          Length = 69882

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   aaacatgaaggccagagtgc 298
             ||||||||||||||||||||
Sbjct: 45817 aaacatgaaggccagagtgc 45798

>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13
          Length = 349606

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  ccggtccatcaccgtcatct 168
            ||||||||||||||||||||
Sbjct: 5851 ccggtccatcaccgtcatct 5832

>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             13/14
          Length = 316050

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   ccggtccatcaccgtcatct 168
             ||||||||||||||||||||
Sbjct: 24655 ccggtccatcaccgtcatct 24636

>gb|AC022093.6| Homo sapiens chromosome 5 clone CTB-169E12, complete sequence
          Length = 84633

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ccccttcatttcctacctgg 99
             ||||||||||||||||||||
Sbjct: 34012 ccccttcatttcctacctgg 34031

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 216     gtccagatcccgggacggcg 235
               ||||||||||||||||||||
Sbjct: 1454655 gtccagatcccgggacggcg 1454636

>gb|AY107066.1| Zea mays PCO061267 mRNA sequence
          Length = 612

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 cacacgcgcgggatcagcgc 272
           ||||||||||||||||||||
Sbjct: 411 cacacgcgcgggatcagcgc 430

>gb|AC110186.10| Mus musculus chromosome 7, clone RP24-503J9, complete sequence
          Length = 168058

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   ctcaaacatgaaggccagag 295
             ||||||||||||||||||||
Sbjct: 18661 ctcaaacatgaaggccagag 18680


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,325,630
Number of Sequences: 3902068
Number of extensions: 2325630
Number of successful extensions: 46337
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46239
Number of HSP's gapped (non-prelim): 96
length of query: 310
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 288
effective length of database: 17,147,199,772
effective search space: 4938393534336
effective search space used: 4938393534336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)