ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22o08 |
|---|---|
| Clone Library Name | barley_pub |
>TAS_SHIFL (P0A9T5) Protein tas| Length = 346 Score = 70.9 bits (172), Expect = 1e-12 Identities = 38/78 (48%), Positives = 51/78 (65%) Frame = -1 Query: 418 KEATDEYVKLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLP 239 ++A YV +A++HGL P Q+A FVR +PF AST++GATTMDQLK NI+ S L Sbjct: 271 QKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIE---SLHLELS 327 Query: 238 PQVLDDIEILFKKYKDPA 185 VL +IE + + Y PA Sbjct: 328 EDVLAEIEAVHQVYTYPA 345
>TAS_ECOLI (P0A9T4) Protein tas| Length = 346 Score = 70.9 bits (172), Expect = 1e-12 Identities = 38/78 (48%), Positives = 51/78 (65%) Frame = -1 Query: 418 KEATDEYVKLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLP 239 ++A YV +A++HGL P Q+A FVR +PF AST++GATTMDQLK NI+ S L Sbjct: 271 QKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIE---SLHLELS 327 Query: 238 PQVLDDIEILFKKYKDPA 185 VL +IE + + Y PA Sbjct: 328 EDVLAEIEAVHQVYTYPA 345
>ALKE_BABBO (P40690) Aldo-keto reductase (Fragment)| Length = 285 Score = 38.1 bits (87), Expect = 0.009 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -1 Query: 427 SLAKEATDEYVKLAKKHGLTPV-QLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAP 251 SLA A +Y +A + + LA +V RPF ST+IGA QL+ENI S P Sbjct: 201 SLAARAVKDYYNIAMSYKYPNLCALALRWVLTRPFICSTVIGANDFYQLRENIHC--SMP 258 Query: 250 RPLPPQVLD-DIEILFKKYKDP 188 +L+ +I L K++DP Sbjct: 259 SLGITDLLEREINQLHWKWRDP 280
>KCAB_ORYSA (Q40648) Probable voltage-gated potassium channel beta subunit| (K(+) channel beta subunit) Length = 328 Score = 37.4 bits (85), Expect = 0.015 Identities = 22/59 (37%), Positives = 33/59 (55%) Frame = -1 Query: 391 LAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLDDIE 215 +A + G++ QLA + P +S I GAT +Q+ EN+ A P L P+V+D IE Sbjct: 257 IASELGVSLAQLAIAWCASNPNVSSVITGATKENQIVENMKALDVIPL-LTPEVVDKIE 314
>KCAB2_XENLA (Q9PTM5) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) Length = 367 Score = 34.3 bits (77), Expect = 0.13 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -1 Query: 403 EYVKLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLD 224 E+ +A++ G T QLA + +S ++GA+ DQL ENI A P+ L ++ Sbjct: 291 EFQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLLENIGAIQVLPK-LSSSIIH 349 Query: 223 DIE 215 +I+ Sbjct: 350 EID 352
>KCAB2_BOVIN (Q27955) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) Length = 367 Score = 33.5 bits (75), Expect = 0.22 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -1 Query: 403 EYVKLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLD 224 E +A++ G T QLA + +S ++GA++ DQL ENI A P+ L ++ Sbjct: 291 ELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSADQLMENIGAIQVLPK-LSSSIIH 349 Query: 223 DIE 215 +I+ Sbjct: 350 EID 352
>KCAB2_HUMAN (Q13303) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) (HKvbeta2) Length = 367 Score = 33.1 bits (74), Expect = 0.29 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = -1 Query: 403 EYVKLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLD 224 E +A++ G T QLA + +S ++GA+ DQL ENI A P+ L ++ Sbjct: 291 ELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPK-LSSSIIH 349 Query: 223 DIE 215 +I+ Sbjct: 350 EID 352
>AAD14_YEAST (P42884) Putative aryl-alcohol dehydrogenase AAD14 (EC 1.1.1.-)| Length = 376 Score = 33.1 bits (74), Expect = 0.29 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = -1 Query: 424 LAKEATDEYVKLAKKHGLTPVQ-LAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPR 248 L + ++ K+A++HG V +A +VR + +IG ++ LK+NI+A + Sbjct: 271 LEVKISEALTKIAEEHGTESVTAIAIAYVRSKAKNVFPLIGGRKIEHLKQNIEALSIKLT 330 Query: 247 PLPPQVLDDI 218 P + L+ I Sbjct: 331 PEQIEYLESI 340
>AAD16_YEAST (P43546) Putative aryl-alcohol dehydrogenase AAD16 (EC 1.1.1.-)| Length = 152 Score = 32.0 bits (71), Expect = 0.64 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%) Frame = -1 Query: 421 AKEATDEYVKL-------AKKHGLTPVQ-LAXGFVRDRPFTASTIIGATTMDQLKENIDA 266 A E TD +K+ A++HG V +A +VR + ++G ++ LK+NI+A Sbjct: 42 ASEQTDAEIKISEALAKVAEEHGTESVTAIAIAYVRSKAKNVFPLVGGRKIEHLKQNIEA 101 Query: 265 FTSAPRPLPPQVLDDI 218 + P + L+ I Sbjct: 102 LSIKLTPEQIKYLESI 117
>AAD4_YEAST (Q07747) Probable aryl-alcohol dehydrogenase AAD4 (EC 1.1.1.-)| Length = 329 Score = 32.0 bits (71), Expect = 0.64 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -1 Query: 409 TDEYVKLAKKHGLTPVQ-LAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQ 233 ++ K+A++HG V +A +VR + ++G ++ LK+NI+A + P + Sbjct: 230 SEALAKVAEEHGTESVTAIAIAYVRSKAKNVFPLVGGRKIEHLKQNIEALSIKLTPEQIE 289 Query: 232 VLDDI 218 L+ I Sbjct: 290 YLESI 294
>KCAB2_RAT (P62483) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) Length = 367 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = -1 Query: 403 EYVKLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLD 224 E +A++ G T QLA + +S ++GA+ +QL ENI A P+ L ++ Sbjct: 291 ELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPK-LSSSIVH 349 Query: 223 DIE 215 +I+ Sbjct: 350 EID 352
>KCAB2_MOUSE (P62482) Voltage-gated potassium channel beta-2 subunit (K(+)| channel beta-2 subunit) (Kv-beta-2) (Neuroimmune protein F5) Length = 367 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = -1 Query: 403 EYVKLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLD 224 E +A++ G T QLA + +S ++GA+ +QL ENI A P+ L ++ Sbjct: 291 ELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPK-LSSSIVH 349 Query: 223 DIE 215 +I+ Sbjct: 350 EID 352
>WAP_PIG (O46655) Whey acidic protein precursor (WAP)| Length = 132 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = -2 Query: 345 SCVTALLQPAPSSERPPWIS*RRTSMHLPALRGLCRRKSSMTLRFFSRNTKTQQSSRCSF 166 SC LL P P + R PW+ P LC K+ SR+ + + + +C F Sbjct: 68 SCTVPLLVPVPKAGRCPWVP-------APLAPELCLEKNEC-----SRDDQCRGNKKCCF 115 Query: 165 TFFATKGINP 136 + A + ++P Sbjct: 116 SSCAMRCLDP 125
>AAD10_YEAST (P47182) Putative aryl-alcohol dehydrogenase AAD10 (EC 1.1.1.-)| Length = 288 Score = 31.2 bits (69), Expect = 1.1 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = -1 Query: 409 TDEYVKLAKKHGLTPVQ-LAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQ 233 ++ +K+A++HG V +A +VR + ++G ++ LK+NI+A + P + Sbjct: 188 SEALLKVAEEHGTESVTAIAIAYVRSKAKHVFPLVGGRKIEHLKQNIEALSIKLTPEQIK 247 Query: 232 VLDDI 218 L+ I Sbjct: 248 YLESI 252
>KCAB3_XENLA (Q9PTM4) Voltage-gated potassium channel beta-3 subunit (K(+)| channel beta-3 subunit) (Kv-beta-3) Length = 401 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Frame = -1 Query: 427 SLAKEATDEYVKLAKKHGL------TPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDA 266 ++++E ++ K+ + H + T QLA + +S ++G + ++QL EN+ A Sbjct: 311 AISQEGKKQHSKVKELHPIADRLNCTVTQLAIAWCLRSEGVSSVLLGVSNIEQLLENLGA 370 Query: 265 FTSAPRPLPPQVLDDIE 215 P L PQ++ +I+ Sbjct: 371 IQVLPH-LTPQLVTEID 386
>KCAB1_RAT (P63144) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -1 Query: 391 LAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLDDIEI 212 +A++ G T QLA + +S ++G++T +QL EN+ A P+ + V+++I+ Sbjct: 329 IAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPK-MTSHVVNEIDN 387 Query: 211 LFK 203 + + Sbjct: 388 ILR 390
>KCAB1_MOUSE (P63143) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -1 Query: 391 LAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLDDIEI 212 +A++ G T QLA + +S ++G++T +QL EN+ A P+ + V+++I+ Sbjct: 329 IAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPK-MTSHVVNEIDN 387 Query: 211 LFK 203 + + Sbjct: 388 ILR 390
>KCAB1_BOVIN (Q4PJK1) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -1 Query: 391 LAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLDDIEI 212 +A++ G T QLA + +S ++G++T +QL EN+ A P+ + V+++I+ Sbjct: 329 IAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPK-MTSHVVNEIDN 387 Query: 211 LFK 203 + + Sbjct: 388 ILR 390
>KCAB1_RABIT (Q9XT31) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 419 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -1 Query: 391 LAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLDDIEI 212 +A++ G T QLA + +S ++G++T +QL EN+ A P+ + V+++I+ Sbjct: 347 IAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPK-MTSHVVNEIDN 405 Query: 211 LFK 203 + + Sbjct: 406 ILR 408
>KCAB1_HUMAN (Q14722) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 419 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -1 Query: 391 LAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLDDIEI 212 +A++ G T QLA + +S ++G++T +QL EN+ A P+ + V+++I+ Sbjct: 347 IAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPK-MTSHVVNEIDN 405 Query: 211 LFK 203 + + Sbjct: 406 ILR 408
>END4_SALTY (Q8ZNK6) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 285 Score = 30.4 bits (67), Expect = 1.9 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Frame = -1 Query: 355 AXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLDDIEILFKKYKDPAIL* 176 A G + + P A+ I GAT +N + +AP L PQV+DD +I +KY A Sbjct: 10 AAGGLANAPARAAEI-GATAFALFTKNQRQWRAAP--LTPQVIDDFKIACEKYHFSAAQI 66 Query: 175 M-----LIHLFCYKGHQSSTRTRPSKRTWITRFRSC 83 + LI+L GH S S+ ++ + C Sbjct: 67 LPHDSYLINL----GHPVSEALEKSRDAFLDEMQRC 98
>END4_SALTI (Q8Z593) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 285 Score = 30.4 bits (67), Expect = 1.9 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Frame = -1 Query: 355 AXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLDDIEILFKKYKDPAIL* 176 A G + + P A+ I GAT +N + +AP L PQV+DD +I +KY A Sbjct: 10 AAGGLANAPARAAEI-GATAFALFTKNQRQWRAAP--LTPQVIDDFKIACEKYHFSAAQI 66 Query: 175 M-----LIHLFCYKGHQSSTRTRPSKRTWITRFRSC 83 + LI+L GH S S+ ++ + C Sbjct: 67 LPHDSYLINL----GHPVSEALEKSRDAFLDEMQRC 98
>KCAB1_MUSPU (Q28528) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 408 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/63 (26%), Positives = 36/63 (57%) Frame = -1 Query: 391 LAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTSAPRPLPPQVLDDIEI 212 +A++ G T QLA + +S ++G++T +QL EN+ A P+ + V+++I+ Sbjct: 336 IAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPK-MTSHVVNEIDN 394 Query: 211 LFK 203 + + Sbjct: 395 ILR 397
>WAP_RABIT (P09412) Whey acidic protein precursor (WAP)| Length = 127 Score = 30.0 bits (66), Expect = 2.4 Identities = 18/62 (29%), Positives = 24/62 (38%) Frame = -2 Query: 345 SCVTALLQPAPSSERPPWIS*RRTSMHLPALRGLCRRKSSMTLRFFSRNTKTQQSSRCSF 166 SC T ++ P P + R PW+ P L LC S R K SRC+ Sbjct: 63 SCRTPIIVPTPKAGRCPWV-------QAPMLSQLCEELSDCANDIECRGDKKCCFSRCAM 115 Query: 165 TF 160 + Sbjct: 116 RY 117
>YGHZ_ECOLI (Q46851) Hypothetical protein yghZ| Length = 346 Score = 29.6 bits (65), Expect = 3.2 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = -1 Query: 394 KLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTS 257 ++A++ G + Q+A ++ S +IGA+ +QL+EN+ A + Sbjct: 272 EMAQQRGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNN 317
>YGHZ_ECO57 (Q8X529) Hypothetical protein yghZ| Length = 346 Score = 29.3 bits (64), Expect = 4.1 Identities = 12/46 (26%), Positives = 27/46 (58%) Frame = -1 Query: 394 KLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAFTS 257 ++A++ G + Q+A ++ S ++GA+ +QL+EN+ A + Sbjct: 272 EMAQQRGQSMAQMALSWLLKDERVTSVLVGASRAEQLEENVQALNN 317
>AK1E1_MOUSE (Q9DCT1) Aldo-keto reductase family 1 member E1 (EC 1.1.1.-)| Length = 301 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -1 Query: 394 KLAKKHGLTPVQLAXGFVRDRPFTASTIIGATTMDQLKENIDAF 263 K+AKKHG +P Q+ F R I + T +++ENI F Sbjct: 221 KIAKKHGKSPAQILIRFQIQR--NLIVIPKSVTPSRIRENIQVF 262
>DPOL_VZVD (P09252) DNA polymerase (EC 2.7.7.7)| Length = 1194 Score = 28.5 bits (62), Expect = 7.1 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -2 Query: 99 RDFVHVYYTXLCFFQLIFPKCV 34 R+F+H Y T + FQ + PKC+ Sbjct: 30 REFLHSYKTTMSSFQFLAPKCL 51
>PFA4_CRYNE (Q5KLN1) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty| acyltransferase 4) Length = 456 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -3 Query: 398 CQACQEAWANTCPACXWLRA*PPFYSQHH 312 C+ C+ W N CP W+ FY+Q H Sbjct: 111 CRQCKTCWVNHCP---WIGNCVGFYNQGH 136
>ESM8_DROHY (Q07291) Enhancer of split m8 protein (E(spl)m8)| Length = 183 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +2 Query: 233 LRRQRPRSAGKCIDVLLQLIHGGRSDDG 316 L RQR KC+D L L+ R DDG Sbjct: 18 LERQRRARINKCLDTLKTLVADVRGDDG 45
>GPMI_BACSU (P39773) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) (Vegetative protein 107) (VEG107) Length = 510 Score = 28.1 bits (61), Expect = 9.2 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Frame = -1 Query: 397 VKLAKKHGLTPVQLAXGFVRDR---PFTASTIIGATTMDQLKE 278 +KLAKK GLT V + GF+ R P TA T I DQ+KE Sbjct: 132 LKLAKKEGLTKVYI-HGFLDGRDVGPQTAKTYINQLN-DQIKE 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,106,921 Number of Sequences: 219361 Number of extensions: 1273349 Number of successful extensions: 4155 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3954 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4124 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
