Clone Name | rbasd22o08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463165.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1618 Score = 192 bits (97), Expect = 6e-46 Identities = 183/212 (86%) Strand = Plus / Minus Query: 219 atgtcatcgaggacttgcggcggcagaggccgcggagcgctggtaaatgcatcgatgttc 278 |||||||| || |||| ||| | || |||||| ||||| |||||||||||||| |||||| Sbjct: 1332 atgtcatcaagaacttccggtgccaaaggccgtggagcactggtaaatgcatcaatgttc 1273 Query: 279 tccttcaactgatccatggtggtcgctccgatgatggtgctggctgtaaaagggcggtca 338 |||||||||||||||||||| || ||||||||||| ||||| ||||| || || |||||| Sbjct: 1272 tccttcaactgatccatggtcgttgctccgatgattgtgctagctgtgaatggacggtca 1213 Query: 339 cgcacgaagccaanggcaagctggacaggtgttagcccatgcttcttggcaagcttgaca 398 ||||| ||||| | ||||||||||| || ||||| || ||||||||||||||||||||| Sbjct: 1212 cgcacaaagcccagtgcaagctggactggagttaggccgtgcttcttggcaagcttgaca 1153 Query: 399 tactcgtctgttgcttctttagccaaagatgc 430 || || | ||||||||||||||||| ||||| Sbjct: 1152 tattcattcgttgcttctttagccaacgatgc 1121
>dbj|AK065587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030E14, full insert sequence Length = 1606 Score = 184 bits (93), Expect = 2e-43 Identities = 182/212 (85%) Strand = Plus / Minus Query: 219 atgtcatcgaggacttgcggcggcagaggccgcggagcgctggtaaatgcatcgatgttc 278 |||||||| || |||| ||| | || |||||| ||||| |||||||||||||| |||||| Sbjct: 1370 atgtcatcaagaacttccggtgccaaaggccgtggagcactggtaaatgcatcaatgttc 1311 Query: 279 tccttcaactgatccatggtggtcgctccgatgatggtgctggctgtaaaagggcggtca 338 |||||||||||||||||||| || ||||||||||| ||||| ||||| || | |||||| Sbjct: 1310 tccttcaactgatccatggtcgttgctccgatgattgtgctagctgtgaatcgacggtca 1251 Query: 339 cgcacgaagccaanggcaagctggacaggtgttagcccatgcttcttggcaagcttgaca 398 ||||| ||||| | ||||||||||| || ||||| || ||||||||||||||||||||| Sbjct: 1250 cgcacaaagcccagtgcaagctggactggagttaggccgtgcttcttggcaagcttgaca 1191 Query: 399 tactcgtctgttgcttctttagccaaagatgc 430 || || | ||||||||||||||||| ||||| Sbjct: 1190 tattcattcgttgcttctttagccaacgatgc 1159
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 172 bits (87), Expect = 6e-40 Identities = 158/182 (86%) Strand = Plus / Minus Query: 219 atgtcatcgaggacttgcggcggcagaggccgcggagcgctggtaaatgcatcgatgttc 278 |||||||| || |||| ||| | || |||||| ||||| |||||||||||||| |||||| Sbjct: 22897858 atgtcatcaagaacttccggtgccaaaggccgtggagcactggtaaatgcatcaatgttc 22897799 Query: 279 tccttcaactgatccatggtggtcgctccgatgatggtgctggctgtaaaagggcggtca 338 |||||||||||||||||||| || ||||||||||| ||||| ||||| || || |||||| Sbjct: 22897798 tccttcaactgatccatggtcgttgctccgatgattgtgctagctgtgaatggacggtca 22897739 Query: 339 cgcacgaagccaanggcaagctggacaggtgttagcccatgcttcttggcaagcttgaca 398 ||||| ||||| | ||||||||||| || ||||| || ||||||||||||||||||||| Sbjct: 22897738 cgcacaaagcccagtgcaagctggactggagttaggccgtgcttcttggcaagcttgaca 22897679 Query: 399 ta 400 || Sbjct: 22897678 ta 22897677
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 172 bits (87), Expect = 6e-40 Identities = 158/182 (86%) Strand = Plus / Minus Query: 219 atgtcatcgaggacttgcggcggcagaggccgcggagcgctggtaaatgcatcgatgttc 278 |||||||| || |||| ||| | || |||||| ||||| |||||||||||||| |||||| Sbjct: 100388 atgtcatcaagaacttccggtgccaaaggccgtggagcactggtaaatgcatcaatgttc 100329 Query: 279 tccttcaactgatccatggtggtcgctccgatgatggtgctggctgtaaaagggcggtca 338 |||||||||||||||||||| || ||||||||||| ||||| ||||| || || |||||| Sbjct: 100328 tccttcaactgatccatggtcgttgctccgatgattgtgctagctgtgaatggacggtca 100269 Query: 339 cgcacgaagccaanggcaagctggacaggtgttagcccatgcttcttggcaagcttgaca 398 ||||| ||||| | ||||||||||| || ||||| || ||||||||||||||||||||| Sbjct: 100268 cgcacaaagcccagtgcaagctggactggagttaggccgtgcttcttggcaagcttgaca 100209 Query: 399 ta 400 || Sbjct: 100208 ta 100207
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 172 bits (87), Expect = 6e-40 Identities = 158/182 (86%) Strand = Plus / Minus Query: 219 atgtcatcgaggacttgcggcggcagaggccgcggagcgctggtaaatgcatcgatgttc 278 |||||||| || |||| ||| | || |||||| ||||| |||||||||||||| |||||| Sbjct: 22890886 atgtcatcaagaacttccggtgccaaaggccgtggagcactggtaaatgcatcaatgttc 22890827 Query: 279 tccttcaactgatccatggtggtcgctccgatgatggtgctggctgtaaaagggcggtca 338 |||||||||||||||||||| || ||||||||||| ||||| ||||| || || |||||| Sbjct: 22890826 tccttcaactgatccatggtcgttgctccgatgattgtgctagctgtgaatggacggtca 22890767 Query: 339 cgcacgaagccaanggcaagctggacaggtgttagcccatgcttcttggcaagcttgaca 398 ||||| ||||| | ||||||||||| || ||||| || ||||||||||||||||||||| Sbjct: 22890766 cgcacaaagcccagtgcaagctggactggagttaggccgtgcttcttggcaagcttgaca 22890707 Query: 399 ta 400 || Sbjct: 22890706 ta 22890705
>gb|AE009072.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 98 of 256 of the complete sequence Length = 11368 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 280 ccttcaactgatccatggtggtcgctccgatgatgg 315 |||||||||| |||||||||||||| |||||||||| Sbjct: 10300 ccttcaactgttccatggtggtcgcgccgatgatgg 10335
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 280 ccttcaactgatccatggtggtcgctccgatgatgg 315 |||||||||| |||||||||||||| |||||||||| Sbjct: 1082656 ccttcaactgttccatggtggtcgcgccgatgatgg 1082691
>ref|XM_658407.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5895.2), mRNA Length = 1407 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 197 gtatttcttgaaaagaatctcaatgt 222 |||||||||||||||| ||||||||| Sbjct: 174 gtatttcttgaaaagagtctcaatgt 149
>gb|AC144636.4| Artibeus jamaicensis clone 1A13, complete sequence Length = 114691 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 acatatatttcaaaaaataaac 30 |||||||||||||||||||||| Sbjct: 93806 acatatatttcaaaaaataaac 93785
>gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold Length = 584809 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 acatatatttcaaaaaataaac 30 |||||||||||||||||||||| Sbjct: 418365 acatatatttcaaaaaataaac 418344
>gb|AC016708.11| Homo sapiens BAC clone RP11-223M6 from 2, complete sequence Length = 194304 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tgtatttcttgaaaagaatct 216 ||||||||||||||||||||| Sbjct: 1820 tgtatttcttgaaaagaatct 1800
>ref|NM_125079.2| Arabidopsis thaliana CKX3 (CYTOKININ OXIDASE 3); cytokinin oxidase AT5G56970 (CKX3) mRNA, complete cds Length = 1595 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atatatttcaaaaaataaac 30 |||||||||||||||||||| Sbjct: 1567 atatatttcaaaaaataaac 1586
>ref|XM_638766.1| Dictyostelium discoideum hypothetical protein (DDB0167375), partial mRNA Length = 1230 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 191 gtctttgtatttcttgaaaagaatctcaatgt 222 ||||||| |||| ||||||||||| ||||||| Sbjct: 335 gtctttggatttgttgaaaagaatttcaatgt 304
>gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-392C14, complete sequence Length = 218081 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 cacatatatttcaaaaaata 27 |||||||||||||||||||| Sbjct: 127206 cacatatatttcaaaaaata 127187
>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4 ~complete genomic sequence, complete sequence Length = 174826 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tgaggattgatgccctttgt 153 |||||||||||||||||||| Sbjct: 172802 tgaggattgatgccctttgt 172783
>gb|AY935269.1| Antirrhinum majus plena (PLE) gene, complete sequence Length = 85060 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tgcacatatatttcaaaaaa 25 |||||||||||||||||||| Sbjct: 38898 tgcacatatatttcaaaaaa 38917
>emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chromosome 9, complete sequence Length = 175726 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ctgttgcttctttagccaaa 425 |||||||||||||||||||| Sbjct: 20964 ctgttgcttctttagccaaa 20945
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 tggtcgctccgatgatggtgctgg 321 ||||||| |||||||||||||||| Sbjct: 409609 tggtcgcgccgatgatggtgctgg 409632
>emb|AJ300474.1|AHI300474 Antirrhinum hispanicum ORF1, ORF2, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, s2-RNase gene, ORF9 and slf-S2 gene Length = 63687 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atatatttcaaaaaataaac 30 |||||||||||||||||||| Sbjct: 48634 atatatttcaaaaaataaac 48653
>gb|AC090150.9| Homo sapiens chromosome 8, clone RP11-521M14, complete sequence Length = 210629 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ggcaagctggacaggtgtta 372 |||||||||||||||||||| Sbjct: 170753 ggcaagctggacaggtgtta 170734
>gb|AC124649.6| Homo sapiens chromosome 8, clone RP11-23I8, complete sequence Length = 191004 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ggcaagctggacaggtgtta 372 |||||||||||||||||||| Sbjct: 57405 ggcaagctggacaggtgtta 57386
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 ttgggaaatatcagttgaaagaaa 64 ||||||||||| |||||||||||| Sbjct: 1764894 ttgggaaatattagttgaaagaaa 1764917
>emb|BX830070.1|CNS0A1GX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZE08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1594 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atatatttcaaaaaataaac 30 |||||||||||||||||||| Sbjct: 1567 atatatttcaaaaaataaac 1586
>gb|AC107387.6| Homo sapiens BAC clone RP11-321I11 from 2, complete sequence Length = 105842 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 tacacatttgggaaatatca 53 |||||||||||||||||||| Sbjct: 7650 tacacatttgggaaatatca 7669
>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence Length = 413138 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 191 gtctttgtatttcttgaaaagaatctcaatgt 222 ||||||| |||| ||||||||||| ||||||| Sbjct: 22534 gtctttggatttgttgaaaagaatttcaatgt 22565
>gb|AF303979.1|AF303979 Arabidopsis thaliana cytokinin oxidase (CKX3) mRNA, complete cds Length = 1572 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atatatttcaaaaaataaac 30 |||||||||||||||||||| Sbjct: 1544 atatatttcaaaaaataaac 1563
>dbj|AB024035.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17 Length = 78423 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 atatatttcaaaaaataaac 30 |||||||||||||||||||| Sbjct: 29443 atatatttcaaaaaataaac 29424
>dbj|AP006255.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-361G14, complete sequence Length = 189176 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ctgttgcttctttagccaaa 425 |||||||||||||||||||| Sbjct: 49560 ctgttgcttctttagccaaa 49541
>gb|AY552545.2| Uncultured marine gamma proteobacterium EBAC20E09 clone EBAC20E09, complete sequence Length = 144407 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 atatatttcaaaaaataaac 30 |||||||||||||||||||| Sbjct: 64348 atatatttcaaaaaataaac 64329
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 12 tatatttcaaaaaataaacgcatacaca 39 ||||||||||||||| |||||| ||||| Sbjct: 339170 tatatttcaaaaaattaacgcagacaca 339143
>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete sequence Length = 195413 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tgtgcacatatatttcaaaa 23 |||||||||||||||||||| Sbjct: 179900 tgtgcacatatatttcaaaa 179881
>dbj|AB020871.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium cancer , segment 3/10 Length = 100000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ctgttgcttctttagccaaa 425 |||||||||||||||||||| Sbjct: 70780 ctgttgcttctttagccaaa 70761 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,395,785 Number of Sequences: 3902068 Number of extensions: 4395785 Number of successful extensions: 100393 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100223 Number of HSP's gapped (non-prelim): 170 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)