>MUG1_MOUSE (P28665) Murinoglobulin-1 precursor (MuG1)|
          Length = 1476

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 161 DHSVSSFCSYM*CCIWMHLRASHVTFSVYTMSK 63
           +H     CSY  C    H  A HV ++VY++SK
Sbjct: 414 NHKEEDSCSYFYCMEERHASAKHVAYAVYSLSK 446

>HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4912

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
 Frame = +2

Query: 173  KTPPLSISATISFKAGTLLANVLYSLEY-----LALVPSADRARASKLTAS--------G 313
            + PP+++ A +  +  +L   +L  L        + +      R+ +LT          G
Sbjct: 2708 RPPPIAVGARVRLRTSSLRYGMLCPLRLGRSQGSSAIGVVSSVRSKQLTVDFPDQPAWQG 2767

Query: 314  NCSNTPFISSKPISARTDGLGTTRITSPP---LGS*TR*SALITSSQLEFAPHFMMKGAV 484
            + +    ++S+P SA    LG +    PP   +   +R    +T S  E A   ++ G+ 
Sbjct: 2768 HINEVELVASQPTSATLPSLGDSCSQMPPSDLIEDWSRCIRSLTVSSNEAAAKHLLNGSN 2827

Query: 485  VPVLNCSTFHC 517
             P  +CS+  C
Sbjct: 2828 QPWQSCSSGPC 2838

>HUNB_DROME (P05084) Protein hunchback|
          Length = 758

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 260 ALVPSADRARASKLTASGNCSNTPFISSKPISARTDGLGTT-RITSPPLGS 409
           A VP A+ + +S  ++SGN SN    S+   S+ +   GTT  + +PP G+
Sbjct: 647 AHVPQANTSASSTASSSGNSSNASSNSNGNSSSNSSSNGTTSAVAAPPSGT 697

>CATW_MOUSE (P56203) Cathepsin W precursor (EC 3.4.22.-) (Lymphopain)|
          Length = 371

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
 Frame = +1

Query: 118 IQHYI*LQNELTL*SDVLENTTSLHLRNNLFQGRYFAS*RSVQSR-IPGSCAIGGSCKGK 294
           I HY+ +   +T+       T ++ L  +  +G   A+  S   R +  S  + G  K K
Sbjct: 248 IAHYLAVHGPITV-------TINMKLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKKK 300

Query: 295 QAHCFGQLLKHAF---HFLKAHLCKNRWS--WNNTDYLTTFRFLNPLICLDNQFTARICS 459
           +    G +L H+    H     + KN W   W    Y   +R  N        FTA++ S
Sbjct: 301 EGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGVTKYPFTAQVDS 360

Query: 460 AFYDERCCCP 489
                R  CP
Sbjct: 361 PVKKARTSCP 370

>TRUA_STRCO (O86776) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 284

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -3

Query: 396 GEVIRVVPRPSVLAEMGFEEMKGVFEQLPEAVSLLALARSADGTRARYSRLYRTLASKV 220
           G+V  V     V AE   + +K +  +LP  V + AL  +  G  AR+S ++R  A +V
Sbjct: 70  GQVAHVDLPREVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRV 128

>SUA5_YEAST (P32579) Protein SUA5|
          Length = 426

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 248 LEYLALVPSADRARASKLTASGNCSNTPFISSKPISARTDGLGTTRITSPPLGS*TR*SA 427
           L  L  VPS++ +  SKLT +   +    I + P++     L  T I +P   + TR S 
Sbjct: 146 LTILLPVPSSEHSALSKLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSP 205

Query: 428 LITS 439
            + S
Sbjct: 206 TLAS 209

>BCHZ_RHOS4 (Q3J1A0) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin|
           reductase subunit Z)
          Length = 491

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 318 QLPEAVSLLALARSADGTRARYSRLYRTLASKVPA--LKEIVAEMERGGV 175
           +LP  V+ L  +  ++GT A  SR ++ L   +PA  +   +AEM  GGV
Sbjct: 54  ELPIVVTGLGESEMSEGTEASMSRAWKVLDPALPAVVVTGSIAEMIGGGV 103

>DNB2_ADE07 (P04497) Early E2A DNA-binding protein|
          Length = 517

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 343 KAHLCKNRWSWNNTDYLTTFR--FLNPLICLDNQFTARICSAFYDERCCCPGVKLQ 504
           +A + +NRW  N            +N   C  NQF+++ C  FY E     G+K Q
Sbjct: 301 RAKITQNRWGRNVVQLANNDARCCVNDANCATNQFSSKSCGMFYTE-----GIKAQ 351

>HRCA_BIFLO (Q8G6C7) Heat-inducible transcription repressor hrcA|
          Length = 372

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = -3

Query: 402 KGGEVIRVVPRPSVLAEMGFEEMKGVFEQLPEAVSLLALARSAD-----GT-RARYSRLY 241
           K  E +R     S+ A  G+E ++GV + L +A   +AL   A+     GT    +SR  
Sbjct: 191 KSAETVR-----SIAASAGYESVRGVADTLADAFESMALDERANELYMSGTSHLAHSRSL 245

Query: 240 RTLASKVPALKEIVAEME 187
             LA    AL+E V  M+
Sbjct: 246 ADLAPLFDALEEQVVLMK 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,516,668
Number of Sequences: 219361
Number of extensions: 1584936
Number of successful extensions: 4248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4248
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)