>RL3_ORYSA (P35684) 60S ribosomal protein L3|
          Length = 388

 Score =  102 bits (255), Expect = 2e-22
 Identities = 51/61 (83%), Positives = 53/61 (86%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           IK  CVGP KRVVTL QSL KQTSRLALE IKLKF+DTSSKFGH RFQ TDEKQRF+GKL
Sbjct: 327 IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKL 386

Query: 192 K 190
           K
Sbjct: 387 K 387

>RL3A_ARATH (P17094) 60S ribosomal protein L3|
          Length = 388

 Score = 84.0 bits (206), Expect = 8e-17
 Identities = 42/60 (70%), Positives = 47/60 (78%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           IK  CVGP KRVVTL QSL  QTSRLALE IKLKF+DT+S FGH RFQ + EK RFY ++
Sbjct: 327 IKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 386

>RL3B_ARATH (P22738) 60S ribosomal protein L3|
          Length = 389

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 39/59 (66%), Positives = 46/59 (77%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGK 196
           IK  CVGP KRVVTL Q+L KQTSRLA+E IKLKF+D +S  GH RFQ + EK +FYG+
Sbjct: 327 IKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 385

>RL3_DROME (O16797) 60S ribosomal protein L3|
          Length = 415

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 36/61 (59%), Positives = 42/61 (68%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           IK  C+G  KR++TL +SL K T R ALE IKLKF+DTSSK GH RFQ   +K  F G L
Sbjct: 332 IKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPL 391

Query: 192 K 190
           K
Sbjct: 392 K 392

>RL3_BOVIN (P39872) 60S ribosomal protein L3|
          Length = 402

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 36/61 (59%), Positives = 43/61 (70%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K   VG  KRV+TL +SL  QT R ALE I LKF+DT+SKFGH RFQ  +EK+ F G L
Sbjct: 332 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPL 391

Query: 192 K 190
           K
Sbjct: 392 K 392

>RL3_TOXCA (P49149) 60S ribosomal protein L3|
          Length = 401

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 36/61 (59%), Positives = 42/61 (68%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           I+  CVG  KR +TL +SL  QT R A E I LK++DTSSKFGH RFQ   EK+ F GKL
Sbjct: 329 IRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKL 388

Query: 192 K 190
           K
Sbjct: 389 K 389

>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)|
          Length = 402

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 36/61 (59%), Positives = 43/61 (70%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K   VG  KRV+TL +SL  QT R ALE I LKF+DT+SKFGH RFQ  +EK+ F G L
Sbjct: 332 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPL 391

Query: 192 K 190
           K
Sbjct: 392 K 392

>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)|
          Length = 402

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 36/61 (59%), Positives = 43/61 (70%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K   VG  KRV+TL +SL  QT R ALE I LKF+DT+SKFGH RFQ  +EK+ F G L
Sbjct: 332 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPL 391

Query: 192 K 190
           K
Sbjct: 392 K 392

>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3|
          Length = 402

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 36/61 (59%), Positives = 43/61 (70%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K   VG  KRV+TL +SL  QT R ALE I LKF+DT+SKFGH RFQ  +EK+ F G L
Sbjct: 332 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPL 391

Query: 192 K 190
           K
Sbjct: 392 K 392

>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)|
           (TARBP-B)
          Length = 402

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 36/61 (59%), Positives = 43/61 (70%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K   VG  KRV+TL +SL  QT R ALE I LKF+DT+SKFGH RFQ  +EK+ F G L
Sbjct: 332 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPL 391

Query: 192 K 190
           K
Sbjct: 392 K 392

>RL3_CAEEL (P50880) 60S ribosomal protein L3|
          Length = 401

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 34/56 (60%), Positives = 42/56 (75%)
 Frame = -2

Query: 357 VGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKLK 190
           +GP KR++TL +SL  QT R+A E I LK++DTSSK GH RFQ T EK+ F GKLK
Sbjct: 335 LGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3|
          Length = 401

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 34/56 (60%), Positives = 42/56 (75%)
 Frame = -2

Query: 357 VGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKLK 190
           +GP KR++TL +SL  QT R+A E I LK++DTSSK GH RFQ T EK+ F GKLK
Sbjct: 335 LGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390

>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B|
          Length = 387

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 32/55 (58%), Positives = 40/55 (72%)
 Frame = -2

Query: 354 GPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKLK 190
           GP KRV+TL +SL   TSR ALE + LK++DT+SKFGH RFQ   E ++F G LK
Sbjct: 329 GPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A|
          Length = 387

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 32/55 (58%), Positives = 40/55 (72%)
 Frame = -2

Query: 354 GPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKLK 190
           GP KRV+TL +SL   TSR ALE + LK++DT+SKFGH RFQ   E ++F G LK
Sbjct: 329 GPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383

>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like|
          Length = 406

 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 33/61 (54%), Positives = 40/61 (65%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    G  KRV+TL +SL    SR ALE I+LKF+DT+SKFGH RFQ   EK+ F G  
Sbjct: 332 LKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQ 391

Query: 192 K 190
           K
Sbjct: 392 K 392

>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)|
          Length = 392

 Score = 64.7 bits (156), Expect = 5e-11
 Identities = 32/61 (52%), Positives = 42/61 (68%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    G  KRV+TL ++L  QTSR A E ++LK++DTSSKFGH  FQ  +EK+ F G L
Sbjct: 325 VKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTL 384

Query: 192 K 190
           K
Sbjct: 385 K 385

>RL3_DICDI (P34113) 60S ribosomal protein L3|
          Length = 397

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 30/61 (49%), Positives = 40/61 (65%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    GP KR +TL +S+  QT R ALE I LKF+DTSSKFGH   Q  ++K +++G  
Sbjct: 331 LKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVK 390

Query: 192 K 190
           K
Sbjct: 391 K 391

>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like|
          Length = 406

 Score = 63.9 bits (154), Expect = 9e-11
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    G  KRV+TL +SL    SR A+E I+LKF+DT+SKFGH RFQ   EK+ F G  
Sbjct: 332 LKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQ 391

Query: 192 K 190
           K
Sbjct: 392 K 392

>RL3_ASHGO (Q759R7) 60S ribosomal protein L3|
          Length = 388

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 33/61 (54%), Positives = 39/61 (63%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    G  KRVVTL +SL   TSR ALE + LK++DT+SKFG  RFQ   EK  F G L
Sbjct: 325 VKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTL 384

Query: 192 K 190
           K
Sbjct: 385 K 385

>RL3_NEUCR (P59671) 60S ribosomal protein L3|
          Length = 392

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 31/61 (50%), Positives = 42/61 (68%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    G  KRV+TL +S+   TSR ALE ++LK++DTSS+FGH  FQ   EK++F G L
Sbjct: 325 VKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTL 384

Query: 192 K 190
           K
Sbjct: 385 K 385

>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of|
           killer protein 8) (Trichodermin resistance protein)
          Length = 386

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 32/61 (52%), Positives = 39/61 (63%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    G  KR+VTL +SL   TSR ALE + LK++DT+SKFG  RFQ   EK  F G L
Sbjct: 323 VKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTL 382

Query: 192 K 190
           K
Sbjct: 383 K 383

>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3|
          Length = 387

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 33/61 (54%), Positives = 39/61 (63%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    G  KRVVTL +SL   TSR ALE + LK++DT+SKFG  RFQ   EK  F G L
Sbjct: 324 LKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTL 383

Query: 192 K 190
           K
Sbjct: 384 K 384

>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3|
          Length = 387

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 32/61 (52%), Positives = 39/61 (63%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    G  KRVVTL +SL   TSR A+E + LK++DT+SKFG  RFQ   EK  F G L
Sbjct: 324 VKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTL 383

Query: 192 K 190
           K
Sbjct: 384 K 384

>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3|
          Length = 383

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 33/61 (54%), Positives = 40/61 (65%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K   VG  KRVVTL +SL +Q    A E + +KFVDTSSK GH RFQ + EK+ FYG  
Sbjct: 318 VKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGAR 374

Query: 192 K 190
           K
Sbjct: 375 K 375

>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3|
          Length = 389

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = -2

Query: 372 IKXYCVGPXKRVVTLXQSLXKQTSRLALEXIKLKFVDTSSKFGHXRFQXTDEKQRFYGKL 193
           +K    G  KR+VT+ +SL   TSR A E + LK++DT+SKFG  RFQ   EK  F G L
Sbjct: 324 LKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTL 383

Query: 192 K 190
           K
Sbjct: 384 K 384

>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +1

Query: 145  RFDKXTQLILRSSSSLELAIEPLLLVGGLETXVPKLGRGVDKLELDXLQCETRGLLXQGL 324
            R+   T+L    + +LE A++   L G L++   +L   +DK+E++ L  ET+GL  +  
Sbjct: 5516 RYKDITKLSADVAKTLEHALQ---LAGQLQSMHKELCNWLDKVEVELLSYETQGLKGEAA 5572

Query: 325  AE 330
            ++
Sbjct: 5573 SQ 5574

>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 178 SSSSLELAIEPLLLVGGLETXVPKLGRGVDKLELDXLQCETRGLLXQGLA 327
           SS+++ L I   +L+  L T   KLG  +  +  D  +     ++ QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 178 SSSSLELAIEPLLLVGGLETXVPKLGRGVDKLELDXLQCETRGLLXQGLA 327
           SS+++ L I   +L+  L T   KLG  +  +  D  +     ++ QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

>HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 315

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +1

Query: 172 LRSSSSLELAIEPLL----LVGGLETXVPKLGRGVDKLELDXLQCETRGLLXQGLAEGHH 339
           LR  S L LA+ P L    L G ++T + KL  G    E D +   T GL   GLA  HH
Sbjct: 129 LRRQSQL-LALRPDLDIISLRGNVDTRLRKLMDG----EFDAIVMATAGLKRLGLAAPHH 183


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,219,821
Number of Sequences: 219361
Number of extensions: 654204
Number of successful extensions: 1251
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)