ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd23d03 |
|---|---|
| Clone Library Name | barley_pub |
>GAT29_ARATH (Q5PP38) GATA transcription factor 29| Length = 470 Score = 42.0 bits (97), Expect = 0.002 Identities = 47/141 (33%), Positives = 60/141 (42%), Gaps = 9/141 (6%) Frame = -3 Query: 653 KQHTLENVGSALVSVALEGEDTKETGGNENTSALKDLTKSNMKPLKRPHESQLQSCPE-- 480 K H LE S + E ED T S+L +++ ++RP ES Q+ E Sbjct: 346 KSHLLE---SYYMLKRREIEDCVTT--TSRVSSLSPSNNNSLVTIERPCESLNQNFSETR 400 Query: 479 GTMRIAKKVCKSVTMAPQFK-----GSFLPKSGGAPFNLLMLPPDKISMLAPPQYMDN-- 321 G MR K+V K + + SF P S G P Y DN Sbjct: 401 GVMRSPKEVMKIRSKHTEENLENSVSSFKPVSCGGPLVF--------------SYEDNDI 446 Query: 320 SDQDLLLEVPLNARQPEAELL 258 SDQDLLL+VP N P+AELL Sbjct: 447 SDQDLLLDVPSNGSFPQAELL 467
>GAT28_ARATH (Q8W4H1) GATA transcription factor 28| Length = 510 Score = 37.0 bits (84), Expect = 0.052 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 7/135 (5%) Frame = -3 Query: 635 NVGSALVSVALEGEDTKETGGNENTSALKDLTK--SNMKPLKRPHESQLQSCPE--GTMR 468 N + S L E K TG + T++ + N+ +KR +E+Q+Q E G MR Sbjct: 380 NKSRLVESYNLLKEREKGTGDSVTTTSKSSIPNVPKNIVTIKRRYENQIQVKSESRGLMR 439 Query: 467 IAKKVCKSVTM--APQFKGSFLPKSGGAPFNLLMLPPDKISMLAPPQYMDNSDQDLLL-E 297 K+V K F P+S + F + S + + +SDQDLLL + Sbjct: 440 SPKRVMKMKASHETENNVSCFRPRSLASVF-----AQEGGSAVFSYEGNCSSDQDLLLLD 494 Query: 296 VPLNARQPEAELLYQ 252 +P N P+AELL+Q Sbjct: 495 LPSNGSFPQAELLHQ 509
>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -3 Query: 407 PKSGGAPFNLLMLPPDKISMLAPPQYMDNSDQDLLL 300 PKSG PF + M PP+ L +DNS QD L+ Sbjct: 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALI 64
>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -3 Query: 407 PKSGGAPFNLLMLPPDKISMLAPPQYMDNSDQDLLL 300 PKSG PF + M PP+ L +DNS QD L+ Sbjct: 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALI 64
>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -3 Query: 407 PKSGGAPFNLLMLPPDKISMLAPPQYMDNSDQDLLL 300 PKSG PF + M PP+ L +DNS QD L+ Sbjct: 29 PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALI 64
>IPUA_ASPNG (O00105) Isopullulanase precursor (EC 3.2.1.57)| Length = 564 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = -3 Query: 317 DQDLLLEVPLNARQPEAELLY--QPFQLSSVARSSTSADVVADGEGRL 180 D DL+ P ARQPE LL PF+ SS S + +A GR+ Sbjct: 159 DDDLISLAPSGARQPENALLIFASPFENSSTKPQPGSPNSIAPAPGRV 206
>YZ13_AQUAE (O66406) Hypothetical protein aq_aa13| Length = 142 Score = 30.0 bits (66), Expect = 6.4 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%) Frame = -2 Query: 582 NRRK*KYQ--------CFERPYQIQHEASQKASRKPVAKLPRRNHEDCQKSLQICDYGSS 427 NRRK KYQ F Y + +K + K + KLP +N + SLQ C G + Sbjct: 35 NRRKKKYQQNKYFPDFTFLLSYPVIK--IRKVALKKLQKLPHKNDFNLANSLQNCQLGQN 92 Query: 426 VQRFIFAQIWRSAI*LTHVTP 364 I ++ L H TP Sbjct: 93 ATNLILLLLFS----LDHYTP 109
>PMPC_CHLTR (O84419) Probable outer membrane protein pmpC precursor| (Polymorphic membrane protein C) Length = 1770 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = -3 Query: 602 EGEDTKETGGNENTSALKDLTKSNMK---PLKRPHESQLQSCPEGTMRIAKKVCKSVTMA 432 E +DT +TG E+ L+D T+SN + P +S ++ E + +++ + Sbjct: 665 ESQDTSDTGNAESEEQLQDSTQSNEENTLPNSNIDQSN-ENTDESSDSHTEEITDESVSS 723 Query: 431 PQFKGSFLPKSGGA 390 GS P+ GGA Sbjct: 724 SSESGSSTPQDGGA 737
>ABI3_MOUSE (Q8BYZ1) ABI gene family member 3 (New molecule including SH3)| (Nesh) Length = 367 Score = 29.6 bits (65), Expect = 8.3 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Frame = -3 Query: 527 KPLKRPHESQLQSCPEGTMRIAKKVCKSVTMAPQFKGSFLPKSGGAPFNLLMLPPDKISM 348 +P + P QL + P+G + A + S +P+S G PP + Sbjct: 187 RPPRIPEPVQLPAVPDGKLSAASSASSLASAGSAEGASGIPQSKGQVAPATPPPPPVAPV 246 Query: 347 LAPPQYMDNSDQDLLLEVPLNARQP--EAELLYQP 249 PP + S + L PL QP EAEL P Sbjct: 247 TPPPPPL--SAEVFLPPPPLEVSQPPLEAELPLPP 279
>AOFA_MOUSE (Q64133) Amine oxidase [flavin-containing] A (EC 1.4.3.4)| (Monoamine oxidase type A) (MAO-A) Length = 526 Score = 29.6 bits (65), Expect = 8.3 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%) Frame = -3 Query: 533 NMKPLKRPHESQ-------LQSCPEGTMRIAKKVCKSVTMAPQFKGSFLPKSGGAPFNLL 375 N+ PHE ++ C GT RI SVT Q + F+ SG ++ Sbjct: 179 NINVTSEPHEVSALWFLWYVRQCG-GTSRIF-----SVTNGGQER-KFVGGSGQISEQIM 231 Query: 374 MLPPDKISMLAPPQYMDNSDQDLLLE 297 +L DK+ + +P Y+D +D ++++E Sbjct: 232 VLLGDKVKLSSPVTYIDQTDDNIIIE 257 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,066,162 Number of Sequences: 219361 Number of extensions: 1978514 Number of successful extensions: 4732 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4731 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
