ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HBD_BRAJA (Q45223) 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.... 55 7e-08
2HBD_BACSU (P45856) Probable 3-hydroxybutyryl-CoA dehydrogenase (... 54 9e-08
3HBD_DEIRA (Q9RVG1) Probable 3-hydroxybutyryl-CoA dehydrogenase (... 50 2e-06
4HBD_CLOAB (P52041) 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.... 42 3e-04
5HBD_CLODI (P45364) 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.... 37 0.014
6HBD_CLOTS (P77851) 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.... 37 0.018
7ATL3E_ARATH (Q9LUL6) Putative RING-H2 finger protein ATL3E 28 6.6

>HBD_BRAJA (Q45223) 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)|
           (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD)
          Length = 293

 Score = 54.7 bits (130), Expect = 7e-08
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = -1

Query: 205 LDVCLSVLRVLHNGLGDNKCSPXPLLVQYVDAGRLGKK 92
           LD CLS+++VLH GL D+K  P PLLV+YV+AG LG+K
Sbjct: 239 LDTCLSIMQVLHEGLADSKYRPCPLLVKYVEAGWLGRK 276



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>HBD_BACSU (P45856) Probable 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)|
           (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD)
          Length = 287

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = -1

Query: 205 LDVCLSVLRVLHNGLGDNKCSPXPLLVQYVDAGRLGKK 92
           LD CLS++ VLH+GLGD+K  P PLL +YV AG LGKK
Sbjct: 237 LDTCLSIMEVLHSGLGDSKYRPCPLLRKYVKAGWLGKK 274



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>HBD_DEIRA (Q9RVG1) Probable 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)|
           (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD)
          Length = 278

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = -1

Query: 205 LDVCLSVLRVLHNGLGDNKCSPXPLLVQYVDAGRLGKK 92
           LD CL+++ VLH GLGD+K  P PLL + V AG LG+K
Sbjct: 233 LDTCLAIMEVLHQGLGDDKYRPSPLLRKMVQAGLLGRK 270



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>HBD_CLOAB (P52041) 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)|
           (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD)
          Length = 282

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = -1

Query: 205 LDVCLSVLRVLHNGLGDNKCSPXPLLVQYVDAGRLGKK 92
           LD+CL+++ VL++  GD+K  P  LL +YV AG LG+K
Sbjct: 235 LDICLAIMDVLYSETGDSKYRPHTLLKKYVRAGWLGRK 272



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>HBD_CLODI (P45364) 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)|
           (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD)
          Length = 281

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = -1

Query: 205 LDVCLSVLRVLHNGLGDNKCSPXPLLVQYVDAGRLGKK 92
           LDV L+++ VL+   GD K +  PLL + V A +LG+K
Sbjct: 234 LDVVLAIMNVLYTEFGDTKYTAHPLLAKMVRANQLGRK 271



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>HBD_CLOTS (P77851) 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)|
           (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD)
          Length = 289

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -1

Query: 202 DVCLSVLRVLHNGLGDNKCSPXPLLVQYVDAGRLGKK 92
           DV L+++ VL+   GD+K  P PLL + V  G LG+K
Sbjct: 235 DVVLAIMNVLYEEYGDSKYRPHPLLKKVVRGGLLGRK 271



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>ATL3E_ARATH (Q9LUL6) Putative RING-H2 finger protein ATL3E|
          Length = 204

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 134 SSCPICRCRTTWKEARTR 81
           S+CPICR R   K++RTR
Sbjct: 124 STCPICRKRVCLKQSRTR 141


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,856,102
Number of Sequences: 219361
Number of extensions: 325314
Number of successful extensions: 601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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