>Y1745_ARATH (P59278) Protein At1g51745|
          Length = 597

 Score = 37.0 bits (84), Expect = 0.052
 Identities = 16/43 (37%), Positives = 29/43 (67%)
 Frame = -2

Query: 597 LYDVELAVEGTYKDHRAPLVSLTSKWNRKPVMGFPVPVVVLDD 469
           LY+V++ V+ +Y   R PLVS  S+ + K ++G P+ V +L++
Sbjct: 485 LYEVKIEVKASYTKPRVPLVSRMSELSGKAIVGHPLSVEILEE 527



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
 Frame = -2

Query: 456 ESRDNQHLAKNSLTHLLKRSEVAEPRQPRSSHASK-SKLGGRKKVSEHDMDKSWRPHTKK 280
           E  +N     +S  + +K    A   +PR    S+ S+L G K +  H +        ++
Sbjct: 472 EEANNNSSTPHSTLYEVKIEVKASYTKPRVPLVSRMSELSG-KAIVGHPLSVEI---LEE 527

Query: 279 SASSPRKMRRLSSFGSSRRESTNKNTVVQKIGRPTIACIPVRLVFSRINEALSFQVR 109
             S+   M  + +   S  +   K    +K     +ACIP+++VFSRINE L    R
Sbjct: 528 DYSNGMVMPPVVAKAKSLPKKNGKKQTTEKAKETVVACIPLKVVFSRINEVLKGSAR 584

>DPOA2_RAT (O89043) DNA polymerase alpha subunit B (DNA polymerase alpha 70|
           kDa subunit) (DNA polymerase subunit II)
          Length = 600

 Score = 37.0 bits (84), Expect = 0.052
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
 Frame = -2

Query: 477 LDDSCHVESRDNQHLAKNSLTHLLKRSEVAEPRQPRSSHASKSKLGGRKKVSEHDMDKSW 298
           L  +CH  S+DN+H     +  + +  E  E  +   S  +    G  K+VS        
Sbjct: 74  LSKACHSASKDNRHAGARDIVSIQELIEAEEEEETLLSAYTTPSKGPHKRVS----STPE 129

Query: 297 RPHTKKSAS--SPRKMRRLSSFGSSRRES------TNKNTVVQKIG 184
            P TK+S S  SP ++   SSF  S   S      TN+  VV   G
Sbjct: 130 TPLTKRSISTRSPHQLLSPSSFSPSATPSQKYSSRTNRGEVVTTFG 175

>RBM16_HUMAN (Q9UPN6) Putative RNA-binding protein 16 (RNA-binding motif protein|
           16)
          Length = 1271

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 37/128 (28%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
 Frame = -2

Query: 498 FPVPVVVLDDSCHVESRDN------------------QHLAKNSLTHLLKRSEVAEPRQP 373
           F  P V LDDS  ++ +D                   + +A  S +    RS    PR+ 
Sbjct: 355 FLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEVFEQEAKKVAVRSRSRTHSRSRSRSPRKR 414

Query: 372 RSSHASKSKLGGRKKVSEHDMDKSWRPHTKKSASSPRKMRRLSSFG-SSRRESTNKNTVV 196
           RS    +S+ G RK           R H K+S S  R+ +R SS   SS R +  +    
Sbjct: 415 RS----RSRSGSRK-----------RKHRKRSRSRSRERKRKSSRSYSSERRAREREKER 459

Query: 195 QKIGRPTI 172
           QK G P I
Sbjct: 460 QKKGLPPI 467

>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 972

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 22/84 (26%), Positives = 36/84 (42%)
 Frame = -2

Query: 456 ESRDNQHLAKNSLTHLLKRSEVAEPRQPRSSHASKSKLGGRKKVSEHDMDKSWRPHTKKS 277
           +   N H + +S +H  K    +   +  S H  +S     ++  + D   S     K S
Sbjct: 102 DGSSNSHRSGSSSSHKDKDGSSSSKHKSSSGHHKRSSKDKERRDKDKDRGSSSSSRHKSS 161

Query: 276 ASSPRKMRRLSSFGSSRRESTNKN 205
           +SS  K R  SS  SS   S++K+
Sbjct: 162 SSSRDKERSSSSHKSSSSSSSSKS 185

>SENP1_MOUSE (P59110) Sentrin-specific protease 1 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP1)
          Length = 640

 Score = 32.7 bits (73), Expect = 0.99
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
 Frame = -2

Query: 531 TSKWNRKPVMGFPVPVVVLDDSCHVESRDNQHLAKNSLTHLLKRSEVAEPRQPRSSHASK 352
           T + +R P  GFP   ++L D   +  R  Q     S T    RS    P     + +S 
Sbjct: 23  TFRTHRPPQSGFPEEQLLLSDQQSLPFR--QGTLDGSFT-CSTRSPAYRPDYHSDNPSSD 79

Query: 351 SKLG-GRKKVSEHDMDKSWRPHTKKSASSPRKMRRLSSFGSSRRESTN--KNTVVQK 190
           S LG G  +      +  WR  T  S S+P+K R   S     R++++   NT V K
Sbjct: 80  SFLGSGDVRTFGQSANGQWRNSTPASGSAPQKPRNSRSLCLETRKTSSGLSNTFVGK 136

>H110_CHICK (P08286) Histone H1.10 (Methylated DNA-binding protein 2-H1)|
           (MDBP-2-H1)
          Length = 219

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = -2

Query: 405 KRSEVAEPRQPRS----SHASKSKLGGRKKVSEHDMDKSWRPHTKKSASSPRKMRRLSSF 238
           KR+  A+P++P +    S A K K     K S     K     TKK+A SP+K  + +  
Sbjct: 121 KRTPAAKPKKPAAKKPASAAKKPKKAAAAKKSPKKAKKPAAAATKKAAKSPKKATKAA-- 178

Query: 237 GSSRRESTNKNTVVQKIGRPTIA 169
              ++ +T K+    K  +P  A
Sbjct: 179 -KPKKAATAKSPAKAKAVKPKAA 200

>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)|
            (c-Cbl-associated protein) (CAP) (SH3 domain protein 5)
            (SH3P12)
          Length = 1290

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 28/78 (35%), Positives = 37/78 (47%)
 Frame = -2

Query: 444  NQHLAKNSLTHLLKRSEVAEPRQPRSSHASKSKLGGRKKVSEHDMDKSWRPHTKKSASSP 265
            N HL  + L   LK+     PRQP  S +S+S  G +  +  HD     +PH   SA  P
Sbjct: 848  NIHLM-SPLPFRLKKPLQQHPRQPPPSDSSESPAGQKADLPCHDPQD--QPH---SAGKP 901

Query: 264  RKMRRLSSFGSSRRESTN 211
            +   RLSS  +  R S N
Sbjct: 902  QVPTRLSSRHTMARLSHN 919

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 22/76 (28%), Positives = 37/76 (48%)
 Frame = -2

Query: 450 RDNQHLAKNSLTHLLKRSEVAEPRQPRSSHASKSKLGGRKKVSEHDMDKSWRPHTKKSAS 271
           R NQ  + +S +     S  +E  +P+ S+    ++G R++ S H    S  P  ++   
Sbjct: 482 RQNQQSSSDSGS-----SSSSEEERPKRSNVKNGEVGRRRRHS-HSRSPSPSPRKRQKEP 535

Query: 270 SPRKMRRLSSFGSSRR 223
           SPR+ RR  S   +RR
Sbjct: 536 SPRRRRRSPSPPPARR 551

>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding|
            protein) (NRE-binding protein) (DBP-5) (Bax antagonist
            selected in saccharomyces 1) (BASS1)
          Length = 2426

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 405  KRSEVAEPRQPRSSHASKSKLGGRKKVSEHDMDKSWR-----PHTKKSASSPRKMRRLSS 241
            +RS   E R+    H SKS+   RK+ S  D  K+ R     P  +  + +P + RR  S
Sbjct: 1883 RRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRS 1942

Query: 240  FGSSR 226
             G  R
Sbjct: 1943 VGRRR 1947

>H1_ANAPL (P09426) Histone H1|
          Length = 217

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = -2

Query: 405 KRSEVAEPRQPRS----SHASKSKLGGRKKVSEHDMDKSWRPHTKKSASSPRKMRRLSSF 238
           K+   A+P++P +    S A K K     K S     K     TKK+A SP+K  +    
Sbjct: 120 KKKPAAKPKKPAAKKPASAAKKPKKAAAVKKSPKKAKKPAAAATKKAAKSPKKAAKAGRP 179

Query: 237 GSSRRESTNKNTVVQKIGRPTIA 169
             + +       V  K  +P  A
Sbjct: 180 KKAAKSPAKAKAVKPKAAKPKAA 202

>GIN4_YEAST (Q12263) Serine/threonine-protein kinase GIN4 (EC 2.7.11.1)|
          Length = 1142

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 30/113 (26%), Positives = 50/113 (44%)
 Frame = -2

Query: 555 HRAPLVSLTSKWNRKPVMGFPVPVVVLDDSCHVESRDNQHLAKNSLTHLLKRSEVAEPRQ 376
           +R  L+S+TS   +KP+            S       ++ L+KN  +   K S +     
Sbjct: 403 NRESLISVTSS-RKKPISFNKFTASSASSSNLTTPGSSKRLSKN-FSSKKKLSTIVNQSS 460

Query: 375 PRSSHASKSKLGGRKKVSEHDMDKSWRPHTKKSASSPRKMRRLSSFGSSRRES 217
           P  + AS++K      V ++    S    TKK+  S R ++R+S   S +RES
Sbjct: 461 P--TPASRNKRASVINVEKNQKRASIFSTTKKNKRSSRSIKRMSLIPSMKRES 511

>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 405  KRSEVAEPRQPRSSHASKSKLGGRKKVSEHDMDKSWR-----PHTKKSASSPRKMRRLSS 241
            +RS   E R+    H SKS+   RK+ S  D  K+ R     P  +  + +P + RR  S
Sbjct: 1868 RRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKAARARSRTPSRRSRSHTPSRRRRSIS 1927

Query: 240  FGSSR 226
             G  R
Sbjct: 1928 VGRRR 1932

>H101_CHICK (P08284) Histone H1.01|
          Length = 218

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
 Frame = -2

Query: 405 KRSEVAEPRQPRSSH----ASKSKLGGRKKVSEHDMDKSWRPHTKKSASSPRKMRRLSSF 238
           KR+  A+P++P +      A K K     K S     K     TKK+A SP+K  +    
Sbjct: 121 KRATAAKPKKPAAKKPAAAAKKPKKAAAVKKSPKKAKKPAAAATKKAAKSPKKAAKAGRP 180

Query: 237 GSSRRESTNKNTVVQKIGRP 178
             + +       V  K  +P
Sbjct: 181 KKAAKSPAKAKAVKPKAAKP 200

>ATG1_COLLN (P87248) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)|
           (Autophagy-related protein 1) (Colletotrichum
           lindemuthianum kinase 1)
          Length = 675

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
 Frame = -2

Query: 510 PVMGFPVPVVVLDDSCHVE--------------SRDNQHLAKNSLTHLLKRSEVAEPRQP 373
           PV+  P+P VV DD   VE               R+   LAK+     L+  ++  P + 
Sbjct: 326 PVVVGPIPGVVEDDIPKVEQKPSRDLRSLEADPQREQSELAKSPRERPLRSPQLPSPDEV 385

Query: 372 RSSHASKSKLGGRKKVSEHDMDKSWR--PHTKKSASSPRKMRRLSSFGSSR 226
           R   A+ S   G+    E       R  P  + S S+P +  RLS+   +R
Sbjct: 386 RVPQANVSARTGQSPGREIGEGLGIRRPPMPQPSTSAPSRPHRLSNASLNR 436

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -2

Query: 405 KRSEVAEPRQPRSSHASKSKLGGRKKVSEHDMDKSWRPHTKKSASSPRKMRRLSSFGSSR 226
           +RS     +  + S  S+S    R          S RP   +++SSP  +RR +S    R
Sbjct: 651 RRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQR 710

Query: 225 RESTNKNT 202
           R+S + +T
Sbjct: 711 RQSPSPST 718

>Y1844_CLOTE (Q893H9) Hypothetical UPF0324 membrane protein CTC_01844|
          Length = 345

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/35 (42%), Positives = 25/35 (71%)
 Frame = -2

Query: 204 TVVQKIGRPTIACIPVRLVFSRINEALSFQVRSEN 100
           +V+ K+ R T++ +PV L+FS INE L  + ++EN
Sbjct: 210 SVIVKLTR-TLSIVPVVLIFSYINERLIRKTKNEN 243

>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)|
           (ATP-dependent helicase xnp-1) (X-linked nuclear protein
           1)
          Length = 1359

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -2

Query: 456 ESRDNQHLAKNSLTHLLKRSEVAEPRQPRSSHASKSKLGGRKKV-SEHDMDKSWRPHTKK 280
           E R  +   KN    + KR+E +E        + KSK G +KK  SE + +       KK
Sbjct: 161 EERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKK 220

Query: 279 SASSPRKMRRLSS 241
           S    +K+ +  S
Sbjct: 221 SKKKSKKVVKKES 233

>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2|
           (RNA-binding protein srp-4) (CeSRp40)
          Length = 281

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 405 KRSEVAEPRQPRSSHASKSKLGGRKKVSEHDMDKSWRPHTKKSASSPR 262
           KRS+    ++ RS   S+S+ GGR+  S    ++S  P  ++  SSPR
Sbjct: 232 KRSD----KRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPR 275

>MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC LH)|
           [Contains: Micronuclear linker histone-alpha;
           Micronuclear linker histone-beta; Micronuclear linker
           histone-delta; Micronuclear linker histone-gamma]
          Length = 633

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
 Frame = -2

Query: 456 ESRDNQHLAKNSLTHLLKRSEVAEPRQPRSSHASKSKLG-GRKKVSEHDMDKSWRPHTKK 280
           + R N    K + +   KRS  ++ ++  SS   KS    GRK  S      S   + K 
Sbjct: 249 KGRKNSTSNKRNSSSSSKRSSSSKNKKSSSSKNKKSSSSKGRKSSSSRGRKASSSKNRKS 308

Query: 279 SASSPRKMRRLSSFGSSRRESTNKNTVVQKIGR 181
           S S  RK        SS    +NK       GR
Sbjct: 309 SKSKDRKSSSSKGRKSSSSSKSNKRKASSSRGR 341


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,622,975
Number of Sequences: 219361
Number of extensions: 1816414
Number of successful extensions: 4524
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4520
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)