ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23c22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193487.1| Oryza sativa (japonica cultivar-group), predic... 121 3e-24
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
3dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
4dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
5dbj|AK105731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
6dbj|AK099982.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
7gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 66 2e-07
8gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 66 2e-07
9gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome... 66 2e-07
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
11gb|BC024266.1| Mus musculus cDNA clone IMAGE:5137538, **** WARNI... 44 0.58
12emb|AL645470.20| Mouse DNA sequence from clone RP23-392H19 on ch... 44 0.58
13gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 42 2.3
14gb|AC007478.1|AC007478 Arabidopsis thaliana BAC F15A18 from chro... 42 2.3
15emb|AL627403.13| Mouse DNA sequence from clone RP23-29F4 on chro... 42 2.3
16ref|NM_022618.1| Rattus norvegicus A kinase (PRKA) anchor protei... 40 9.0
17gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.0
18gb|AF147806.2| Gallid herpesvirus 2, complete genome 40 9.0
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.0
20ref|XM_571532.1| Cryptococcus neoformans var. neoformans JEC21 m... 40 9.0
21gb|AY120853.2| Synechococcus sp. PCC 7942 processing protease-li... 40 9.0
22gb|AC116471.8| Mus musculus chromosome 12, clone RP23-384N3, com... 40 9.0
23ref|XM_724368.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 9.0
24gb|AC020786.20| Mus musculus chromosome 7, clone RP23-178G8, com... 40 9.0
25gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 9.0
26gb|AC157821.2| Mus musculus BAC clone RP24-476E8 from chromosome... 40 9.0
27emb|AL645766.5| Mouse DNA sequence from clone RP23-41B10 on chro... 40 9.0
28gb|AC105277.2| Homo sapiens chromosome 1 clone RP4-794H19, compl... 40 9.0
29gb|AC067819.10| Homo sapiens chromosome 18, clone RP11-585K6, co... 40 9.0
30dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 9.0
31gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map ... 40 9.0
32gb|AY510475.1| Gallid herpesvirus 2 clone Md11BAC replication in... 40 9.0
33gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.0
34dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
35gb|AC019090.9| Homo sapiens BAC clone RP11-375P12 from 2, comple... 40 9.0
36gb|AF243438.1|AF243438 Gallid herpesvirus 2 serotype 1 isolate M... 40 9.0
37gb|AF139518.1|AF139518 Rattus norvegicus A-kinase anchor protein... 40 9.0
38gb|AC005909.1|AC005909 Homo sapiens chromosome 18 BAC RPCI11-128... 40 9.0
39gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 9.0 
>ref|NM_193487.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2325

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                        
Query: 221  tctctacggctgctgccaaaagatgagagcctgcgcattttcctcggtgaagatgctgat 280
            |||||||| |||||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 2195 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 2136

                                                                 
Query: 281  ttcttggtatgtggccgccaggacttatccatatcatgctctgaaaccttttt 333
            ||||| || ||||||||||  ||||| ||| ||||||||||||| | ||||||
Sbjct: 2135 ttctttgtgtgtggccgccgtgacttgtccgtatcatgctctgagatcttttt 2083



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 72/80 (90%)
 Strand = Plus / Minus

                                                                        
Query: 95   gtagtgttttctgatctcacttgaaagcttaatgcttcattgatcctactgaaaacaagt 154
            |||| ||| |||||||||||| |||| ||||| ||||| |||||||||||||||||||||
Sbjct: 2321 gtagggttctctgatctcactggaaaacttaaagcttcgttgatcctactgaaaacaagt 2262

                                
Query: 155  cgaaccgggatgcacgcgat 174
            || | |||||||||||||||
Sbjct: 2261 cggagcgggatgcacgcgat 2242



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                        
Query: 518  ttccatttacttgtcagagaaacaagaggtgcacggtggtccttgtangttccttcnact 577
            |||||||||||  | ||||||||||||||  |||| ||| |||||||  ||||||   | 
Sbjct: 1886 ttccatttactcatgagagaaacaagaggcacacgatggcccttgtagcttccttgagca 1827

                                                                        
Query: 578  gccaactcaacatcataaagtttatagnctgnttgnncactcttgattggctttaccaca 637
            ||||| || |||||||| |  |||||| |||   |  || ||||||||||||||||||||
Sbjct: 1826 gccaattctacatcatataccttatagtctgtccgtgcattcttgattggctttaccaca 1767

               
Query: 638  tgg 640
            |||
Sbjct: 1766 tgg 1764



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 356  gatgcatgtgacgatcttggctggcgcggttctgcaacttcgctcctctttagcaagtgg 415
            |||| ||||||||||||||  || |  ||||| |||  |||||||||||||||||||| |
Sbjct: 2048 gatgaatgtgacgatcttgcttgccttggttccgcaggttcgctcctctttagcaagttg 1989

                     
Query: 416  gtaagactg 424
             ||||||||
Sbjct: 1988 ttaagactg 1980
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                            
Query: 221      tctctacggctgctgccaaaagatgagagcctgcgcattttcctcggtgaagatgctgat 280
                |||||||| |||||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 21138832 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 21138773

                                                                     
Query: 281      ttcttggtatgtggccgccaggacttatccatatcatgctctgaaaccttttt 333
                ||||| || ||||||||||  ||||| ||| ||||||||||||| | ||||||
Sbjct: 21138772 ttctttgtgtgtggccgccgtgacttgtccgtatcatgctctgagatcttttt 21138720



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                            
Query: 87       cacctcaggtagtgttttctgatctcacttgaaagcttaatgcttcattgatcctactga 146
                ||||||| |||| ||| |||||||||||| |||| ||||| ||||| |||||||||||||
Sbjct: 21138966 cacctcatgtagggttctctgatctcactggaaaacttaaagcttcgttgatcctactga 21138907

                                            
Query: 147      aaacaagtcgaaccgggatgcacgcgat 174
                |||||||||| | |||||||||||||||
Sbjct: 21138906 aaacaagtcggagcgggatgcacgcgat 21138879



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                            
Query: 518      ttccatttacttgtcagagaaacaagaggtgcacggtggtccttgtangttccttcnact 577
                |||||||||||  | ||||||||||||||  |||| ||| |||||||  ||||||   | 
Sbjct: 21138523 ttccatttactcatgagagaaacaagaggcacacgatggcccttgtagcttccttgagca 21138464

                                                                            
Query: 578      gccaactcaacatcataaagtttatagnctgnttgnncactcttgattggctttaccaca 637
                ||||| || |||||||| |  |||||| |||   |  || ||||||||||||||||||||
Sbjct: 21138463 gccaattctacatcatataccttatagtctgtccgtgcattcttgattggctttaccaca 21138404

                   
Query: 638      tgg 640
                |||
Sbjct: 21138403 tgg 21138401



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                            
Query: 356      gatgcatgtgacgatcttggctggcgcggttctgcaacttcgctcctctttagcaagtgg 415
                |||| ||||||||||||||  || |  ||||| |||  |||||||||||||||||||| |
Sbjct: 21138685 gatgaatgtgacgatcttgcttgccttggttccgcaggttcgctcctctttagcaagttg 21138626

                         
Query: 416      gtaagactg 424
                 ||||||||
Sbjct: 21138625 ttaagactg 21138617
to top
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1144D11
          Length = 157943

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                          
Query: 221    tctctacggctgctgccaaaagatgagagcctgcgcattttcctcggtgaagatgctgat 280
              |||||||| |||||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 106377 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 106318

                                                                   
Query: 281    ttcttggtatgtggccgccaggacttatccatatcatgctctgaaaccttttt 333
              ||||| || ||||||||||  ||||| ||| ||||||||||||| | ||||||
Sbjct: 106317 ttctttgtgtgtggccgccgtgacttgtccgtatcatgctctgagatcttttt 106265



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                          
Query: 87     cacctcaggtagtgttttctgatctcacttgaaagcttaatgcttcattgatcctactga 146
              ||||||| |||| ||| |||||||||||| |||| ||||| ||||| |||||||||||||
Sbjct: 106511 cacctcatgtagggttctctgatctcactggaaaacttaaagcttcgttgatcctactga 106452

                                          
Query: 147    aaacaagtcgaaccgggatgcacgcgat 174
              |||||||||| | |||||||||||||||
Sbjct: 106451 aaacaagtcggagcgggatgcacgcgat 106424



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                          
Query: 518    ttccatttacttgtcagagaaacaagaggtgcacggtggtccttgtangttccttcnact 577
              |||||||||||  | ||||||||||||||  |||| ||| |||||||  ||||||   | 
Sbjct: 106068 ttccatttactcatgagagaaacaagaggcacacgatggcccttgtagcttccttgagca 106009

                                                                          
Query: 578    gccaactcaacatcataaagtttatagnctgnttgnncactcttgattggctttaccaca 637
              ||||| || |||||||| |  |||||| |||   |  || ||||||||||||||||||||
Sbjct: 106008 gccaattctacatcatataccttatagtctgtccgtgcattcttgattggctttaccaca 105949

                 
Query: 638    tgg 640
              |||
Sbjct: 105948 tgg 105946



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                          
Query: 356    gatgcatgtgacgatcttggctggcgcggttctgcaacttcgctcctctttagcaagtgg 415
              |||| ||||||||||||||  || |  ||||| |||  |||||||||||||||||||| |
Sbjct: 106230 gatgaatgtgacgatcttgcttgccttggttccgcaggttcgctcctctttagcaagttg 106171

                       
Query: 416    gtaagactg 424
               ||||||||
Sbjct: 106170 ttaagactg 106162
to top
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1064G04
          Length = 186704

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                         
Query: 221   tctctacggctgctgccaaaagatgagagcctgcgcattttcctcggtgaagatgctgat 280
             |||||||| |||||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 36341 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 36282

                                                                  
Query: 281   ttcttggtatgtggccgccaggacttatccatatcatgctctgaaaccttttt 333
             ||||| || ||||||||||  ||||| ||| ||||||||||||| | ||||||
Sbjct: 36281 ttctttgtgtgtggccgccgtgacttgtccgtatcatgctctgagatcttttt 36229



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                         
Query: 87    cacctcaggtagtgttttctgatctcacttgaaagcttaatgcttcattgatcctactga 146
             ||||||| |||| ||| |||||||||||| |||| ||||| ||||| |||||||||||||
Sbjct: 36475 cacctcatgtagggttctctgatctcactggaaaacttaaagcttcgttgatcctactga 36416

                                         
Query: 147   aaacaagtcgaaccgggatgcacgcgat 174
             |||||||||| | |||||||||||||||
Sbjct: 36415 aaacaagtcggagcgggatgcacgcgat 36388



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                         
Query: 518   ttccatttacttgtcagagaaacaagaggtgcacggtggtccttgtangttccttcnact 577
             |||||||||||  | ||||||||||||||  |||| ||| |||||||  ||||||   | 
Sbjct: 36032 ttccatttactcatgagagaaacaagaggcacacgatggcccttgtagcttccttgagca 35973

                                                                         
Query: 578   gccaactcaacatcataaagtttatagnctgnttgnncactcttgattggctttaccaca 637
             ||||| || |||||||| |  |||||| |||   |  || ||||||||||||||||||||
Sbjct: 35972 gccaattctacatcatataccttatagtctgtccgtgcattcttgattggctttaccaca 35913

                
Query: 638   tgg 640
             |||
Sbjct: 35912 tgg 35910



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                         
Query: 356   gatgcatgtgacgatcttggctggcgcggttctgcaacttcgctcctctttagcaagtgg 415
             |||| ||||||||||||||  || |  ||||| |||  |||||||||||||||||||| |
Sbjct: 36194 gatgaatgtgacgatcttgcttgccttggttccgcaggttcgctcctctttagcaagttg 36135

                      
Query: 416   gtaagactg 424
              ||||||||
Sbjct: 36134 ttaagactg 36126
to top
>dbj|AK105731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H05, full
            insert sequence
          Length = 2006

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                        
Query: 221  tctctacggctgctgccaaaagatgagagcctgcgcattttcctcggtgaagatgctgat 280
            |||||||| |||||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 1658 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 1599

                                                                 
Query: 281  ttcttggtatgtggccgccaggacttatccatatcatgctctgaaaccttttt 333
            ||||| || ||||||||||  ||||| ||| ||||||||||||| | ||||||
Sbjct: 1598 ttctttgtgtgtggccgccgtgacttgtccgtatcatgctctgagatcttttt 1546



 Score =  103 bits (52), Expect = 7e-19
 Identities = 79/88 (89%)
 Strand = Plus / Minus

                                                                        
Query: 87   cacctcaggtagtgttttctgatctcacttgaaagcttaatgcttcattgatcctactga 146
            ||||||| |||| ||| |||||||||||| |||| ||||| ||||| |||||||||||||
Sbjct: 1792 cacctcatgtagggttctctgatctcactggaaaacttaaagcttcgttgatcctactga 1733

                                        
Query: 147  aaacaagtcgaaccgggatgcacgcgat 174
            |||||||||| | |||||||||||||||
Sbjct: 1732 aaacaagtcggagcgggatgcacgcgat 1705



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                        
Query: 518  ttccatttacttgtcagagaaacaagaggtgcacggtggtccttgtangttccttcnact 577
            |||||||||||  | ||||||||||||||  |||| ||| |||||||  ||||||   | 
Sbjct: 1349 ttccatttactcatgagagaaacaagaggcacacgatggcccttgtagcttccttgagca 1290

                                                                        
Query: 578  gccaactcaacatcataaagtttatagnctgnttgnncactcttgattggctttaccaca 637
            ||||| || |||||||| |  |||||| |||   |  || ||||||||||||||||||||
Sbjct: 1289 gccaattctacatcatataccttatagtctgtccgtgcattcttgattggctttaccaca 1230

               
Query: 638  tgg 640
            |||
Sbjct: 1229 tgg 1227



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 356  gatgcatgtgacgatcttggctggcgcggttctgcaacttcgctcctctttagcaagtgg 415
            |||| ||||||||||||||  || |  ||||| |||  |||||||||||||||||||| |
Sbjct: 1511 gatgaatgtgacgatcttgcttgccttggttccgcaggttcgctcctctttagcaagttg 1452

                     
Query: 416  gtaagactg 424
             ||||||||
Sbjct: 1451 ttaagactg 1443
to top
>dbj|AK099982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129G24, full
            insert sequence
          Length = 2838

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                        
Query: 221  tctctacggctgctgccaaaagatgagagcctgcgcattttcctcggtgaagatgctgat 280
            |||||||| |||||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 2466 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 2407

                                                                 
Query: 281  ttcttggtatgtggccgccaggacttatccatatcatgctctgaaaccttttt 333
            ||||| || ||||||||||  ||||| ||| ||||||||||||| | ||||||
Sbjct: 2406 ttctttgtgtgtggccgccgtgacttgtccgtatcatgctctgagatcttttt 2354



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                        
Query: 87   cacctcaggtagtgttttctgatctcacttgaaagcttaatgcttcattgatcctactga 146
            ||||||| |||| ||| |||||||||||| |||| ||||| ||||| |||||||||||||
Sbjct: 2600 cacctcatgtagggttctctgatctcactggaaaacttaaagcttcgttgatcctactga 2541

                                        
Query: 147  aaacaagtcgaaccgggatgcacgcgat 174
            |||||||||| | | |||||||||||||
Sbjct: 2540 aaacaagtcggagctggatgcacgcgat 2513



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                        
Query: 518  ttccatttacttgtcagagaaacaagaggtgcacggtggtccttgtangttccttcnact 577
            |||||||||||  | ||||||||||||||  |||| ||| |||||||  ||||||   | 
Sbjct: 2157 ttccatttactcatgagagaaacaagaggcacacgatggcccttgtagcttccttgagca 2098

                                                                        
Query: 578  gccaactcaacatcataaagtttatagnctgnttgnncactcttgattggctttaccaca 637
            ||||| || |||||||| |  |||||| |||   |  || ||||||||||||||||||||
Sbjct: 2097 gccaattctacatcatataccttatagtctgtccgtgcattcttgattggctttaccaca 2038

               
Query: 638  tgg 640
            |||
Sbjct: 2037 tgg 2035



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 356  gatgcatgtgacgatcttggctggcgcggttctgcaacttcgctcctctttagcaagtgg 415
            |||| ||||||||||||||  || |  ||||| |||  |||||||||||||||||||| |
Sbjct: 2319 gatgaatgtgacgatcttgcttgccttggttccgcaggttcgctcctctttagcaagttg 2260

                     
Query: 416  gtaagactg 424
             ||||||||
Sbjct: 2259 ttaagactg 2251
to top
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0030I14, complete sequence
          Length = 159035

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                      
Query: 128   gcttcattgatcctactgaaaacaagtcgaaccgggatgca 168
             ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 10160 gcttcattgatcctactgaaaacaactcgaagcgggatgca 10200
to top
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
              complete sequence
          Length = 142196

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                       
Query: 128    gcttcattgatcctactgaaaacaagtcgaaccgggatgca 168
              ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 140792 gcttcattgatcctactgaaaacaactcgaagcgggatgca 140832
to top
>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03,
             complete sequence
          Length = 45160

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                      
Query: 128   gcttcattgatcctactgaaaacaagtcgaaccgggatgca 168
             ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 31130 gcttcattgatcctactgaaaacaactcgaagcgggatgca 31090
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                         
Query: 128      gcttcattgatcctactgaaaacaagtcgaaccgggatgca 168
                ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 29362135 gcttcattgatcctactgaaaacaactcgaagcgggatgca 29362175
to top
>gb|BC024266.1| Mus musculus cDNA clone IMAGE:5137538, **** WARNING: chimeric clone
           ****
          Length = 4305

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 242 gatgagagcctgcgcattttcctcgg 267
           |||||||||||||||| |||||||||
Sbjct: 431 gatgagagcctgcgcactttcctcgg 456
to top
>emb|AL645470.20| Mouse DNA sequence from clone RP23-392H19 on chromosome 11, complete
             sequence
          Length = 198031

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 242   gatgagagcctgcgcattttcctcgg 267
             |||||||||||||||| |||||||||
Sbjct: 20731 gatgagagcctgcgcactttcctcgg 20756
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 185    ccaattttctgaactacagta 205
              |||||||||||||||||||||
Sbjct: 898052 ccaattttctgaactacagta 898072
to top
>gb|AC007478.1|AC007478 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM,
             complete sequence
          Length = 107931

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   tttttgtttgtgctttctcta 226
             |||||||||||||||||||||
Sbjct: 76636 tttttgtttgtgctttctcta 76656
to top
>emb|AL627403.13| Mouse DNA sequence from clone RP23-29F4 on chromosome X, complete
             sequence
          Length = 184697

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   aactacagtatttttgtttgt 216
             |||||||||||||||||||||
Sbjct: 91997 aactacagtatttttgtttgt 92017
to top
>ref|NM_022618.1| Rattus norvegicus A kinase (PRKA) anchor protein 6 (Akap6), mRNA
          Length = 8827

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  cacttgaaagcttaatgctt 131
            ||||||||||||||||||||
Sbjct: 4394 cacttgaaagcttaatgctt 4375
to top
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 620    ttgattggctttaccacatg 639
              ||||||||||||||||||||
Sbjct: 258750 ttgattggctttaccacatg 258731
to top
>gb|AF147806.2| Gallid herpesvirus 2, complete genome
          Length = 174077

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 346   tttcgatttagatgcatgtgacga 369
             ||||||||| ||||||||||||||
Sbjct: 65014 tttcgattttgatgcatgtgacga 64991
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gtatttttgtttgtgctttc 222
               ||||||||||||||||||||
Sbjct: 2899945 gtatttttgtttgtgctttc 2899964
to top
>ref|XM_571532.1| Cryptococcus neoformans var. neoformans JEC21 motor (CNF00790)
            partial mRNA
          Length = 14097

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 620  ttgattggctttaccacatg 639
            ||||||||||||||||||||
Sbjct: 5701 ttgattggctttaccacatg 5720
to top
>gb|AY120853.2| Synechococcus sp. PCC 7942 processing protease-like protein gene,
             partial cds; phycocyanobilin:ferredoxin
             oxidoreductase-like protein, DevB (devB), DevC (devC),
             tRNA pseudoridine 55 synthase, CheY (cheY), 50S ribosomal
             protein L27, 50S ribosomal protein L21, KaiA (kaiA), KaiB
             (kaiB), KaiC (kaiC), glutathione peroxidase, virulence
             associated protein C, rRNA methylase-like protein, PhdD
             (phdD), indole-3-glycerol phosphate synthase-like protein,
             PdxJ (pdxJ), KguA (kguA), AmpA (ampA), MobA (mobA),
             transferrin variant A-like protein,
             6-pyruvoyl-tetrahydropterin synthase-like protein, NugC
             (nugC), NdhK (ndhK), Nu3C (nu3C), RubR (rubR), PsbE
             (psbE), PsbF (psbF), PsbL (psbL), PsbJ (psbJ),
             apolipoprotein N-acyltransferase-like protein, unknown
             protein, IspF (ispF), Ap-4-A phosphorylase II-like
             protein, PanC (panC), Kcy (kcy), and dTDP-glucose
             4-6-dehydratase-like protein genes, complete cds; and
             unknown genes
          Length = 74355

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   agcctgcgcattttcctcgg 267
             ||||||||||||||||||||
Sbjct: 18874 agcctgcgcattttcctcgg 18893
to top
>gb|AC116471.8| Mus musculus chromosome 12, clone RP23-384N3, complete sequence
          Length = 240876

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    attgatcctactgaaaacaa 152
              ||||||||||||||||||||
Sbjct: 226874 attgatcctactgaaaacaa 226893
to top
>ref|XM_724368.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00170)
           partial mRNA
          Length = 1725

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 206 tttttgtttgtgctttctct 225
           ||||||||||||||||||||
Sbjct: 256 tttttgtttgtgctttctct 237
to top
>gb|AC020786.20| Mus musculus chromosome 7, clone RP23-178G8, complete sequence
          Length = 227330

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    atgacaactgtcatccaaaa 479
              ||||||||||||||||||||
Sbjct: 160496 atgacaactgtcatccaaaa 160515
to top
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     tgaaaagctagaaattgtat 49
              ||||||||||||||||||||
Sbjct: 572972 tgaaaagctagaaattgtat 572953
to top
>gb|AC157821.2| Mus musculus BAC clone RP24-476E8 from chromosome 12, complete sequence
          Length = 189341

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    attgatcctactgaaaacaa 152
              ||||||||||||||||||||
Sbjct: 115232 attgatcctactgaaaacaa 115213
to top
>emb|AL645766.5| Mouse DNA sequence from clone RP23-41B10 on chromosome 2 Contains a
             novel gene C330008G21Rik, complete sequence
          Length = 73575

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   tccatttacttgtcagagaa 538
             ||||||||||||||||||||
Sbjct: 59645 tccatttacttgtcagagaa 59664
to top
>gb|AC105277.2| Homo sapiens chromosome 1 clone RP4-794H19, complete sequence
          Length = 161739

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tttttgtttgtgctttctct 225
             ||||||||||||||||||||
Sbjct: 38496 tttttgtttgtgctttctct 38477
to top
>gb|AC067819.10| Homo sapiens chromosome 18, clone RP11-585K6, complete sequence
          Length = 216972

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ttttgtttgtgctttctcta 226
              ||||||||||||||||||||
Sbjct: 183702 ttttgtttgtgctttctcta 183721
to top
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    agcctgcgcattttcctcgg 267
              ||||||||||||||||||||
Sbjct: 391999 agcctgcgcattttcctcgg 392018
to top
>gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map m283, complete
             sequence
          Length = 89779

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   atttttgtttgtgctttctc 224
             ||||||||||||||||||||
Sbjct: 72351 atttttgtttgtgctttctc 72370
to top
>gb|AY510475.1| Gallid herpesvirus 2 clone Md11BAC replication intermediate, complete
             genome
          Length = 170950

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 346   tttcgatttagatgcatgtgacga 369
             ||||||||| ||||||||||||||
Sbjct: 77085 tttcgattttgatgcatgtgacga 77062
to top
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   gtatttttgtttgtgctttc 222
             ||||||||||||||||||||
Sbjct: 37432 gtatttttgtttgtgctttc 37451
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     gtatttttgtttgtgctttc 222
               ||||||||||||||||||||
Sbjct: 2900056 gtatttttgtttgtgctttc 2900075
to top
>gb|AC019090.9| Homo sapiens BAC clone RP11-375P12 from 2, complete sequence
          Length = 87224

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   acttgaaagcttaatgcttc 132
             ||||||||||||||||||||
Sbjct: 66825 acttgaaagcttaatgcttc 66844
to top
>gb|AF243438.1|AF243438 Gallid herpesvirus 2 serotype 1 isolate Md5, complete genome
          Length = 177874

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 346   tttcgatttagatgcatgtgacga 369
             ||||||||| ||||||||||||||
Sbjct: 66453 tttcgattttgatgcatgtgacga 66430
to top
>gb|AF139518.1|AF139518 Rattus norvegicus A-kinase anchor protein mRNA, complete cds
          Length = 8827

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  cacttgaaagcttaatgctt 131
            ||||||||||||||||||||
Sbjct: 4394 cacttgaaagcttaatgctt 4375
to top
>gb|AC005909.1|AC005909 Homo sapiens chromosome 18 BAC RPCI11-128D14 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 137557

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ttttgtttgtgctttctcta 226
             ||||||||||||||||||||
Sbjct: 48160 ttttgtttgtgctttctcta 48179
to top
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     agcctgcgcattttcctcgg 267
               ||||||||||||||||||||
Sbjct: 1228806 agcctgcgcattttcctcgg 1228787


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,455,213
Number of Sequences: 3902068
Number of extensions: 6455213
Number of successful extensions: 111065
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110763
Number of HSP's gapped (non-prelim): 290
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top