ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23c21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193487.1| Oryza sativa (japonica cultivar-group), predic... 84 2e-13
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
3dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
4dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
5dbj|AK105731.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 2e-13
6dbj|AK099982.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 4e-11
7gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 50 0.002
8gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.002
9gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.002
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.002
11gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 42 0.57
12gb|BC024266.1| Mus musculus cDNA clone IMAGE:5137538, **** WARNI... 42 0.57
13gb|AC007478.1|AC007478 Arabidopsis thaliana BAC F15A18 from chro... 42 0.57
14emb|AL645470.20| Mouse DNA sequence from clone RP23-392H19 on ch... 42 0.57
15emb|AL627403.13| Mouse DNA sequence from clone RP23-29F4 on chro... 42 0.57
16gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.3
17gb|AC116471.8| Mus musculus chromosome 12, clone RP23-384N3, com... 40 2.3
18ref|XM_724368.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 2.3
19gb|AC157821.2| Mus musculus BAC clone RP24-476E8 from chromosome... 40 2.3
20gb|AC105277.2| Homo sapiens chromosome 1 clone RP4-794H19, compl... 40 2.3
21gb|AC067819.10| Homo sapiens chromosome 18, clone RP11-585K6, co... 40 2.3
22gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map ... 40 2.3
23gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.3
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
25gb|AC005909.1|AC005909 Homo sapiens chromosome 18 BAC RPCI11-128... 40 2.3
26gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosom... 38 8.9
27ref|NM_022618.1| Rattus norvegicus A kinase (PRKA) anchor protei... 38 8.9
28gb|AC165358.3| Mus musculus BAC clone RP23-122F14 from chromosom... 38 8.9
29gb|AF100305.1| Caenorhabditis elegans cosmid W04B5, complete seq... 38 8.9
30gb|AC154675.2| Mus musculus BAC clone RP23-143J5 from chromosome... 38 8.9
31gb|AC121302.7| Mus musculus chromosome 13, clone RP23-163B12, co... 38 8.9
32gb|AC124462.2| Mus musculus BAC clone RP24-146O4 from chromosome... 38 8.9
33gb|AY120853.2| Synechococcus sp. PCC 7942 processing protease-li... 38 8.9
34gb|AC122295.4| Mus musculus BAC clone RP23-263E3 from 13, comple... 38 8.9
35gb|AE004259.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 38 8.9
36gb|AC154379.2| Mus musculus BAC clone RP23-52B1 from chromosome ... 38 8.9
37emb|Z80107.2|HS197J16 Human DNA sequence from clone RP1-197J16 o... 38 8.9
38emb|AL805915.9| Human DNA sequence from clone RP11-118H17 on chr... 38 8.9
39emb|AL391117.8| Human DNA sequence from clone RP11-103B9 on chro... 38 8.9
40emb|AL603907.12| Mouse DNA sequence from clone RP23-139D10 on ch... 38 8.9
41emb|AL844906.18| Mouse DNA sequence from clone RP23-371C7 on chr... 38 8.9
42dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 38 8.9
43gb|AC068556.10| Homo sapiens chromosome 10 clone RP11-415G6, com... 38 8.9
44gb|AC068060.5| Homo sapiens chromosome 10 clone RP11-359B3, comp... 38 8.9
45dbj|AK168395.1| Mus musculus 17 days pregnant adult female amnio... 38 8.9
46gb|AC019100.4| Homo sapiens BAC clone RP11-443K8 from 2, complet... 38 8.9
47gb|AC084440.1|AC084440 Caenorhabditis briggsae cosmid CB005K20, ... 38 8.9
48emb|BX294379.5| Zebrafish DNA sequence from clone DKEY-7A20 in l... 38 8.9
49gb|AC004492.1|AC004492 Homo sapiens BAC clone CTA-363E19 from 7q... 38 8.9
50emb|AL606727.3| Zebrafish DNA sequence from clone BUSM1-79F24 in... 38 8.9
51gb|AF139518.1|AF139518 Rattus norvegicus A-kinase anchor protein... 38 8.9
52emb|BX629354.1|CNS09SBQ Tetraodon nigroviridis BAC sequence 38 8.9
53emb|CT030150.14| Mouse DNA sequence from clone RP23-414I13 on ch... 38 8.9
54gb|AC004057.1|AC004057 Homo sapiens chromosome 4 clone B240N9 ma... 38 8.9
55emb|Z81001.1|HSV1049C4 Human DNA sequence from clone GHc-1049C4 ... 38 8.9
56emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on ch... 38 8.9
57gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 38 8.9 
>ref|NM_193487.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2325

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                        
Query: 1    tctgatctcacttgaaagcttaatgctnnattgatcctactgaaaacaagtcgnaccggg 60
            |||||||||||| |||| ||||| |||   ||||||||||||||||||||||| | ||||
Sbjct: 2312 tctgatctcactggaaaacttaaagcttcgttgatcctactgaaaacaagtcggagcggg 2253

                       
Query: 61   atgcacgcgat 71
            |||||||||||
Sbjct: 2252 atgcacgcgat 2242



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 118  tctctacngctgctgccaaaagatgagagcctgcgcattttcctcgntgaagatgctgat 177
            |||||||  |||||| | |||||||||||||| ||||||||||||| ||||| |||||||
Sbjct: 2195 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 2136

              
Query: 178  tt 179
            ||
Sbjct: 2135 tt 2134
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                            
Query: 1        tctgatctcacttgaaagcttaatgctnnattgatcctactgaaaacaagtcgnaccggg 60
                |||||||||||| |||| ||||| |||   ||||||||||||||||||||||| | ||||
Sbjct: 21138949 tctgatctcactggaaaacttaaagcttcgttgatcctactgaaaacaagtcggagcggg 21138890

                           
Query: 61       atgcacgcgat 71
                |||||||||||
Sbjct: 21138889 atgcacgcgat 21138879



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                            
Query: 118      tctctacngctgctgccaaaagatgagagcctgcgcattttcctcgntgaagatgctgat 177
                |||||||  |||||| | |||||||||||||| ||||||||||||| ||||| |||||||
Sbjct: 21138832 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 21138773

                  
Query: 178      tt 179
                ||
Sbjct: 21138772 tt 21138771
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>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1144D11
          Length = 157943

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                          
Query: 1      tctgatctcacttgaaagcttaatgctnnattgatcctactgaaaacaagtcgnaccggg 60
              |||||||||||| |||| ||||| |||   ||||||||||||||||||||||| | ||||
Sbjct: 106494 tctgatctcactggaaaacttaaagcttcgttgatcctactgaaaacaagtcggagcggg 106435

                         
Query: 61     atgcacgcgat 71
              |||||||||||
Sbjct: 106434 atgcacgcgat 106424



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 118    tctctacngctgctgccaaaagatgagagcctgcgcattttcctcgntgaagatgctgat 177
              |||||||  |||||| | |||||||||||||| ||||||||||||| ||||| |||||||
Sbjct: 106377 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 106318

                
Query: 178    tt 179
              ||
Sbjct: 106317 tt 106316
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>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1064G04
          Length = 186704

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                         
Query: 1     tctgatctcacttgaaagcttaatgctnnattgatcctactgaaaacaagtcgnaccggg 60
             |||||||||||| |||| ||||| |||   ||||||||||||||||||||||| | ||||
Sbjct: 36458 tctgatctcactggaaaacttaaagcttcgttgatcctactgaaaacaagtcggagcggg 36399

                        
Query: 61    atgcacgcgat 71
             |||||||||||
Sbjct: 36398 atgcacgcgat 36388



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 118   tctctacngctgctgccaaaagatgagagcctgcgcattttcctcgntgaagatgctgat 177
             |||||||  |||||| | |||||||||||||| ||||||||||||| ||||| |||||||
Sbjct: 36341 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 36282

               
Query: 178   tt 179
             ||
Sbjct: 36281 tt 36280
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>dbj|AK105731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H05, full
            insert sequence
          Length = 2006

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                        
Query: 1    tctgatctcacttgaaagcttaatgctnnattgatcctactgaaaacaagtcgnaccggg 60
            |||||||||||| |||| ||||| |||   ||||||||||||||||||||||| | ||||
Sbjct: 1775 tctgatctcactggaaaacttaaagcttcgttgatcctactgaaaacaagtcggagcggg 1716

                       
Query: 61   atgcacgcgat 71
            |||||||||||
Sbjct: 1715 atgcacgcgat 1705



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 118  tctctacngctgctgccaaaagatgagagcctgcgcattttcctcgntgaagatgctgat 177
            |||||||  |||||| | |||||||||||||| ||||||||||||| ||||| |||||||
Sbjct: 1658 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 1599

              
Query: 178  tt 179
            ||
Sbjct: 1598 tt 1597
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>dbj|AK099982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129G24, full
            insert sequence
          Length = 2838

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 1    tctgatctcacttgaaagcttaatgctnnattgatcctactgaaaacaagtcgnaccggg 60
            |||||||||||| |||| ||||| |||   ||||||||||||||||||||||| | | ||
Sbjct: 2583 tctgatctcactggaaaacttaaagcttcgttgatcctactgaaaacaagtcggagctgg 2524

                       
Query: 61   atgcacgcgat 71
            |||||||||||
Sbjct: 2523 atgcacgcgat 2513



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 118  tctctacngctgctgccaaaagatgagagcctgcgcattttcctcgntgaagatgctgat 177
            |||||||  |||||| | |||||||||||||| ||||||||||||| ||||| |||||||
Sbjct: 2466 tctctacgactgctggcgaaagatgagagcctacgcattttcctcggtgaagttgctgat 2407

              
Query: 178  tt 179
            ||
Sbjct: 2406 tt 2405
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>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0030I14, complete sequence
          Length = 159035

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 30    attgatcctactgaaaacaagtcgnaccgggatgca 65
             |||||||||||||||||||| ||| | |||||||||
Sbjct: 10165 attgatcctactgaaaacaactcgaagcgggatgca 10200
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>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
              complete sequence
          Length = 142196

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 30     attgatcctactgaaaacaagtcgnaccgggatgca 65
              |||||||||||||||||||| ||| | |||||||||
Sbjct: 140797 attgatcctactgaaaacaactcgaagcgggatgca 140832
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>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03,
             complete sequence
          Length = 45160

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 30    attgatcctactgaaaacaagtcgnaccgggatgca 65
             |||||||||||||||||||| ||| | |||||||||
Sbjct: 31125 attgatcctactgaaaacaactcgaagcgggatgca 31090
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 30       attgatcctactgaaaacaagtcgnaccgggatgca 65
                |||||||||||||||||||| ||| | |||||||||
Sbjct: 29362140 attgatcctactgaaaacaactcgaagcgggatgca 29362175
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     ccaattttctgaactacagta 102
              |||||||||||||||||||||
Sbjct: 898052 ccaattttctgaactacagta 898072
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>gb|BC024266.1| Mus musculus cDNA clone IMAGE:5137538, **** WARNING: chimeric clone
           ****
          Length = 4305

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 139 gatgagagcctgcgcattttcctcg 163
           |||||||||||||||| ||||||||
Sbjct: 431 gatgagagcctgcgcactttcctcg 455
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>gb|AC007478.1|AC007478 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM,
             complete sequence
          Length = 107931

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   tttttgtttgtgctttctcta 123
             |||||||||||||||||||||
Sbjct: 76636 tttttgtttgtgctttctcta 76656
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>emb|AL645470.20| Mouse DNA sequence from clone RP23-392H19 on chromosome 11, complete
             sequence
          Length = 198031

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 139   gatgagagcctgcgcattttcctcg 163
             |||||||||||||||| ||||||||
Sbjct: 20731 gatgagagcctgcgcactttcctcg 20755
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>emb|AL627403.13| Mouse DNA sequence from clone RP23-29F4 on chromosome X, complete
             sequence
          Length = 184697

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    aactacagtatttttgtttgt 113
             |||||||||||||||||||||
Sbjct: 91997 aactacagtatttttgtttgt 92017
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 100     gtatttttgtttgtgctttc 119
               ||||||||||||||||||||
Sbjct: 2899945 gtatttttgtttgtgctttc 2899964
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>gb|AC116471.8| Mus musculus chromosome 12, clone RP23-384N3, complete sequence
          Length = 240876

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     attgatcctactgaaaacaa 49
              ||||||||||||||||||||
Sbjct: 226874 attgatcctactgaaaacaa 226893
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>ref|XM_724368.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00170)
           partial mRNA
          Length = 1725

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 103 tttttgtttgtgctttctct 122
           ||||||||||||||||||||
Sbjct: 256 tttttgtttgtgctttctct 237
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>gb|AC157821.2| Mus musculus BAC clone RP24-476E8 from chromosome 12, complete sequence
          Length = 189341

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     attgatcctactgaaaacaa 49
              ||||||||||||||||||||
Sbjct: 115232 attgatcctactgaaaacaa 115213
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>gb|AC105277.2| Homo sapiens chromosome 1 clone RP4-794H19, complete sequence
          Length = 161739

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tttttgtttgtgctttctct 122
             ||||||||||||||||||||
Sbjct: 38496 tttttgtttgtgctttctct 38477
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>gb|AC067819.10| Homo sapiens chromosome 18, clone RP11-585K6, complete sequence
          Length = 216972

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    ttttgtttgtgctttctcta 123
              ||||||||||||||||||||
Sbjct: 183702 ttttgtttgtgctttctcta 183721
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>gb|AC004669.3| Arabidopsis thaliana chromosome 2 clone F7F1 map m283, complete
             sequence
          Length = 89779

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   atttttgtttgtgctttctc 121
             ||||||||||||||||||||
Sbjct: 72351 atttttgtttgtgctttctc 72370
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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   gtatttttgtttgtgctttc 119
             ||||||||||||||||||||
Sbjct: 37432 gtatttttgtttgtgctttc 37451
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 100     gtatttttgtttgtgctttc 119
               ||||||||||||||||||||
Sbjct: 2900056 gtatttttgtttgtgctttc 2900075
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>gb|AC005909.1|AC005909 Homo sapiens chromosome 18 BAC RPCI11-128D14 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 137557

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   ttttgtttgtgctttctcta 123
             ||||||||||||||||||||
Sbjct: 48160 ttttgtttgtgctttctcta 48179
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>gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosome 13, complete
             sequence
          Length = 191162

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   tatttttgtttgtgctttc 119
             |||||||||||||||||||
Sbjct: 62862 tatttttgtttgtgctttc 62844
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>ref|NM_022618.1| Rattus norvegicus A kinase (PRKA) anchor protein 6 (Akap6), mRNA
          Length = 8827

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 9    cacttgaaagcttaatgct 27
            |||||||||||||||||||
Sbjct: 4394 cacttgaaagcttaatgct 4376
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>gb|AC165358.3| Mus musculus BAC clone RP23-122F14 from chromosome 1, complete sequence
          Length = 223166

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 88    ttctgaactacagtatttt 106
             |||||||||||||||||||
Sbjct: 35841 ttctgaactacagtatttt 35823
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>gb|AF100305.1| Caenorhabditis elegans cosmid W04B5, complete sequence
          Length = 30305

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 93   aactacagtatttttgttt 111
            |||||||||||||||||||
Sbjct: 3949 aactacagtatttttgttt 3967
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>gb|AC154675.2| Mus musculus BAC clone RP23-143J5 from chromosome 14, complete sequence
          Length = 207264

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      atctcacttgaaagcttaa 23
              |||||||||||||||||||
Sbjct: 100362 atctcacttgaaagcttaa 100380
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>gb|AC121302.7| Mus musculus chromosome 13, clone RP23-163B12, complete sequence
          Length = 190256

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 97     acagtatttttgtttgtgctttc 119
              ||||||||||||||||| |||||
Sbjct: 184661 acagtatttttgtttgtactttc 184639
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>gb|AC124462.2| Mus musculus BAC clone RP24-146O4 from chromosome 14, complete sequence
          Length = 133903

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 5      atctcacttgaaagcttaa 23
              |||||||||||||||||||
Sbjct: 114648 atctcacttgaaagcttaa 114666
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>gb|AY120853.2| Synechococcus sp. PCC 7942 processing protease-like protein gene,
             partial cds; phycocyanobilin:ferredoxin
             oxidoreductase-like protein, DevB (devB), DevC (devC),
             tRNA pseudoridine 55 synthase, CheY (cheY), 50S ribosomal
             protein L27, 50S ribosomal protein L21, KaiA (kaiA), KaiB
             (kaiB), KaiC (kaiC), glutathione peroxidase, virulence
             associated protein C, rRNA methylase-like protein, PhdD
             (phdD), indole-3-glycerol phosphate synthase-like protein,
             PdxJ (pdxJ), KguA (kguA), AmpA (ampA), MobA (mobA),
             transferrin variant A-like protein,
             6-pyruvoyl-tetrahydropterin synthase-like protein, NugC
             (nugC), NdhK (ndhK), Nu3C (nu3C), RubR (rubR), PsbE
             (psbE), PsbF (psbF), PsbL (psbL), PsbJ (psbJ),
             apolipoprotein N-acyltransferase-like protein, unknown
             protein, IspF (ispF), Ap-4-A phosphorylase II-like
             protein, PanC (panC), Kcy (kcy), and dTDP-glucose
             4-6-dehydratase-like protein genes, complete cds; and
             unknown genes
          Length = 74355

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 145   agcctgcgcattttcctcg 163
             |||||||||||||||||||
Sbjct: 18874 agcctgcgcattttcctcg 18892
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>gb|AC122295.4| Mus musculus BAC clone RP23-263E3 from 13, complete sequence
          Length = 200289

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 97    acagtatttttgtttgtgctttc 119
             ||||||||||||||||| |||||
Sbjct: 13221 acagtatttttgtttgtactttc 13199
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>gb|AE004259.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 167
            of 251 of the complete chromosome
          Length = 11914

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 6    tctcacttgaaagcttaat 24
            |||||||||||||||||||
Sbjct: 3772 tctcacttgaaagcttaat 3754
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>gb|AC154379.2| Mus musculus BAC clone RP23-52B1 from chromosome 17, complete sequence
          Length = 234939

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 96    tacagtatttttgtttgtg 114
             |||||||||||||||||||
Sbjct: 17660 tacagtatttttgtttgtg 17642
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>emb|Z80107.2|HS197J16 Human DNA sequence from clone RP1-197J16 on chromosome X Contains a
             histone H2B family pseudogene, a novel pseudogene and a
             NADH dehydrogenase 6 (MTND6) pseudogene, complete sequence
          Length = 110715

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 102   atttttgtttgtgctttct 120
             |||||||||||||||||||
Sbjct: 59288 atttttgtttgtgctttct 59270
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>emb|AL805915.9| Human DNA sequence from clone RP11-118H17 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 103488

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   atttttgtttgtgctttct 120
             |||||||||||||||||||
Sbjct: 74640 atttttgtttgtgctttct 74658
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>emb|AL391117.8| Human DNA sequence from clone RP11-103B9 on chromosome 9, complete
             sequence
          Length = 159940

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 106   ttgtttgtgctttctctac 124
             |||||||||||||||||||
Sbjct: 96116 ttgtttgtgctttctctac 96134
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>emb|AL603907.12| Mouse DNA sequence from clone RP23-139D10 on chromosome 11 Contains a
              novel gene, complete sequence
          Length = 226006

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 103    tttttgtttgtgctttctc 121
              |||||||||||||||||||
Sbjct: 116137 tttttgtttgtgctttctc 116155
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>emb|AL844906.18| Mouse DNA sequence from clone RP23-371C7 on chromosome 4, complete
            sequence
          Length = 105549

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 99   agtatttttgtttgtgctt 117
            |||||||||||||||||||
Sbjct: 5140 agtatttttgtttgtgctt 5158
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 145    agcctgcgcattttcctcg 163
              |||||||||||||||||||
Sbjct: 391999 agcctgcgcattttcctcg 392017
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>gb|AC068556.10| Homo sapiens chromosome 10 clone RP11-415G6, complete sequence
          Length = 182913

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 102   atttttgtttgtgctttct 120
             |||||||||||||||||||
Sbjct: 23855 atttttgtttgtgctttct 23837
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>gb|AC068060.5| Homo sapiens chromosome 10 clone RP11-359B3, complete sequence
          Length = 182912

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 102    atttttgtttgtgctttct 120
              |||||||||||||||||||
Sbjct: 159054 atttttgtttgtgctttct 159072
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>dbj|AK168395.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
            full-length enriched library, clone:I920009I17
            product:transgene insert site 737, insertional mutation,
            polycystic kidney disease, full insert sequence
          Length = 4228

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 5    atctcacttgaaagcttaa 23
            |||||||||||||||||||
Sbjct: 1720 atctcacttgaaagcttaa 1738
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>gb|AC019100.4| Homo sapiens BAC clone RP11-443K8 from 2, complete sequence
          Length = 213475

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 102    atttttgtttgtgctttct 120
              |||||||||||||||||||
Sbjct: 127879 atttttgtttgtgctttct 127861
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>gb|AC084440.1|AC084440 Caenorhabditis briggsae cosmid CB005K20, complete sequence
          Length = 105936

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    ttttctgaactacagtatt 104
             |||||||||||||||||||
Sbjct: 87267 ttttctgaactacagtatt 87285
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>emb|BX294379.5| Zebrafish DNA sequence from clone DKEY-7A20 in linkage group 1, complete
              sequence
          Length = 214290

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 92     gaactacagtatttttgtt 110
              |||||||||||||||||||
Sbjct: 132447 gaactacagtatttttgtt 132429
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>gb|AC004492.1|AC004492 Homo sapiens BAC clone CTA-363E19 from 7q31.1, complete sequence
          Length = 165608

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 106   ttgtttgtgctttctctac 124
             |||||||||||||||||||
Sbjct: 16162 ttgtttgtgctttctctac 16180
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>emb|AL606727.3| Zebrafish DNA sequence from clone BUSM1-79F24 in linkage group 1,
             complete sequence
          Length = 97210

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 92    gaactacagtatttttgtt 110
             |||||||||||||||||||
Sbjct: 36801 gaactacagtatttttgtt 36783
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>gb|AF139518.1|AF139518 Rattus norvegicus A-kinase anchor protein mRNA, complete cds
          Length = 8827

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 9    cacttgaaagcttaatgct 27
            |||||||||||||||||||
Sbjct: 4394 cacttgaaagcttaatgct 4376
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>emb|BX629354.1|CNS09SBQ Tetraodon nigroviridis BAC sequence
          Length = 95048

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 101   tatttttgtttgtgctttc 119
             |||||||||||||||||||
Sbjct: 59472 tatttttgtttgtgctttc 59490
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>emb|CT030150.14| Mouse DNA sequence from clone RP23-414I13 on chromosome 14, complete
             sequence
          Length = 105716

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     atctcacttgaaagcttaa 23
             |||||||||||||||||||
Sbjct: 80292 atctcacttgaaagcttaa 80310
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>gb|AC004057.1|AC004057 Homo sapiens chromosome 4 clone B240N9 map 4q25, complete sequence
          Length = 152798

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 95    ctacagtatttttgtttgt 113
             |||||||||||||||||||
Sbjct: 39528 ctacagtatttttgtttgt 39546
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>emb|Z81001.1|HSV1049C4 Human DNA sequence from clone GHc-1049C4 on chromosome X, complete
            sequence
          Length = 41275

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 102  atttttgtttgtgctttct 120
            |||||||||||||||||||
Sbjct: 9617 atttttgtttgtgctttct 9599
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>emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on chromosome 4, complete
             sequence
          Length = 221319

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 99    agtatttttgtttgtgctt 117
             |||||||||||||||||||
Sbjct: 54058 agtatttttgtttgtgctt 54076
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 145     agcctgcgcattttcctcg 163
               |||||||||||||||||||
Sbjct: 1228806 agcctgcgcattttcctcg 1228788


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,842,790
Number of Sequences: 3902068
Number of extensions: 1842790
Number of successful extensions: 111470
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111179
Number of HSP's gapped (non-prelim): 291
length of query: 181
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 159
effective length of database: 17,147,199,772
effective search space: 2726404763748
effective search space used: 2726404763748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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