Clone Name
rbasd22n21
Clone Library Name
barley_pub
>NCOA2_MOUSE (Q61026) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
intermediary factor 2) (Glucocorticoid
receptor-interacting protein 1) (GRIP-1)
Length = 1462
Score = 34.3 bits (77), Expect = 0.28
Identities = 32/113 (28%), Positives = 51/113 (45%)
Frame = -3
Query: 578 NQPWSRLPPAPVRNNMNYLAAKEQIPRGGAPDIAEKLSQLSMSSTTNRAPIMPSDRFVDL 399
+ P+S +P + N L ++ + I S+ SM S AP P+ R V
Sbjct: 908 SSPYSVIPQPGMMGNQGMLGSQGNLGNNSTGMIGSSTSRPSMPSG-EWAPQSPAVR-VTC 965
Query: 398 KATTRAHGEPVRRPVPLGPRDTWHARNDPFRRTYEMPGERALLQRKLVS*GPS 240
ATT A PV+ + P + P R + PG+R +LQ ++++ GPS
Sbjct: 966 AATTGAMNRPVQGGMIRNP-----TASIPMRANSQ-PGQRQMLQSQVMNIGPS 1012
>NCOA2_RAT (Q9WUI9) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
intermediary factor 2)
Length = 1465
Score = 33.9 bits (76), Expect = 0.36
Identities = 31/113 (27%), Positives = 51/113 (45%)
Frame = -3
Query: 578 NQPWSRLPPAPVRNNMNYLAAKEQIPRGGAPDIAEKLSQLSMSSTTNRAPIMPSDRFVDL 399
+ P+S +P + N L ++ + I S+ SM S AP P+ R V
Sbjct: 908 SSPYSVIPQPGMMGNQGMLGSQGNLGNNSTGMIGSSTSRSSMPSG-EWAPQSPAVR-VTC 965
Query: 398 KATTRAHGEPVRRPVPLGPRDTWHARNDPFRRTYEMPGERALLQRKLVS*GPS 240
ATT A P++ + P + P R + PG+R +LQ ++++ GPS
Sbjct: 966 AATTGAMNRPIQGGMIRNP-----TASIPMRANSQ-PGQRQMLQPQVMNIGPS 1012
>SAHH2_MOUSE (Q80SW1) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)|
(S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2)
(S-adenosylhomocysteine hydrolase-like 1) (IP3R-binding
protein released with inositol 1,4,5-trisphosphate)
Length = 530
Score = 32.7 bits (73), Expect = 0.81
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +1
Query: 133 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 276
AA A +A W G +WW C DGWQ DG LT +++++
Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>SAHH2_HUMAN (O43865) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)|
(S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2)
(S-adenosylhomocysteine hydrolase-like 1) (DC-expressed
AHCY-like molecule)
Length = 530
Score = 32.7 bits (73), Expect = 0.81
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +1
Query: 133 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 276
AA A +A W G +WW C DGWQ DG LT +++++
Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>CBIJ_METTH (O27083) Probable cobalt-precorrin-6A reductase (EC 1.3.1.-)|
Length = 302
Score = 32.3 bits (72), Expect = 1.1
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 14/81 (17%)
Frame = +1
Query: 262 FLWRR-ALSPGIS*VRRKGSFR-----ACHVSLGP----RGTGRLTGSPWALVVAFRST- 408
+LWRR ++PG V+RKGS R + V G R RL+G PW V A +T
Sbjct: 13 YLWRRKTMNPGDKGVKRKGSDRQREKMSVIVMAGTEDARRIISRLSGMPWVEVTATATTE 72
Query: 409 ---NLSEGMIGARFVVEDIDS 462
+L+E +R V +DS
Sbjct: 73 HGSDLAEKSGASRTVTGALDS 93
>K1949_MOUSE (Q8BQ30) Protein KIAA1949 homolog|
Length = 594
Score = 30.8 bits (68), Expect = 3.1
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = -2
Query: 459 VDVLHHKPGADHAFRQVCGPEGHYQSPRGAREAARASG----TQGHVACPKRPLPAHL*D 292
+D KP + + GP G +E A A Q ++ PLP
Sbjct: 330 IDTQTQKPDPPASSEKHPGPSGMEAEEEAEKEEAEAQSRPLRAQQNLCSGPSPLPPE--H 387
Query: 291 AGREGSPPKEARQLRTIPPTPALL 220
+G EGS +E PPTPA L
Sbjct: 388 SGTEGSRQQEEEAAEPRPPTPAPL 411
>TCF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1 PDGF-responsive|
element-binding protein) (SPRE-binding protein) (Nuclear
factor SPBP)
Length = 1983
Score = 30.8 bits (68), Expect = 3.1
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -1
Query: 397 RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 221
+PLP+ TG P G P R P T PS A + R SSA + + PS
Sbjct: 205 QPLPQTTGQPASGSSHLQPMQR--PSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPS 261
>VPRA_DENPO (P25687) Intestinal toxin 1 (Mamba intestinal toxin 1) (MIT 1)|
(MIT1) (Venom protein A)
Length = 81
Score = 30.8 bits (68), Expect = 3.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 272 GEPSRPASHRCAGRGRFGHATCPWVPEARAASRAPR 379
GE PASH+ G+ H TCP P +P+
Sbjct: 38 GEDCHPASHKIPFSGQRMHHTCPCAPNLACVQTSPK 73
>RECO_GEOSL (Q74FM9) DNA repair protein recO (Recombination protein O)|
Length = 243
Score = 30.4 bits (67), Expect = 4.0
Identities = 26/75 (34%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Frame = +2
Query: 149 RRSPDYCXXXXXXXVDDAKRQMDGRRAGVGGMVLS*RASFGGEPSRPAS----HRCAGRG 316
R S D C DA RRAG G VL G P + HRC G G
Sbjct: 147 RLSLDACAACGVEFPADA-----ARRAGAAGTVLCTGCGRYGAPLSAETVRLLHRCLGTG 201
Query: 317 RFGHATCPWVPEARA 361
RFG P P A
Sbjct: 202 RFGAIVFPPEPLGEA 216
>IP3KC_HUMAN (Q96DU7) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol|
1,4,5-trisphosphate 3-kinase C) (InsP 3-kinase C)
(IP3K-C)
Length = 683
Score = 30.4 bits (67), Expect = 4.0
Identities = 22/56 (39%), Positives = 25/56 (44%)
Frame = +3
Query: 228 RASVGWSSADELPLEESPLARHLIGAPEGVVSGMPRVPGSQRHGPPHGLPVGSGSG 395
R S+ + A LP AR + AP G G R PG QR GP G P G G
Sbjct: 7 RGSLNEAEAGALPAA----ARMGLEAPRG---GRRRQPGQQRPGPGAGAPAGRPEG 55
>GATC_DROME (P91623) GATA-binding factor-C (Transcription factor GATA-C)|
(dGATA-C) (Protein grain)
Length = 486
Score = 30.4 bits (67), Expect = 4.0
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Frame = -2
Query: 483 HSREAVPAVDVLHHKPGADHAFRQVCGPEGHYQ-SPRGARE----AARASGTQGHVACPK 319
H R P+ + + HA QVC P H SP E A ++ + G ACP+
Sbjct: 96 HHRRYYPSYHQHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQFACPQ 155
Query: 318 RPLPAH-L*DAGREGSPPKEARQLRTIPPTP 229
P H L G+ + PPTP
Sbjct: 156 EPQVEHKLGQMGQSHQTTAAGQHSFPFPPTP 186
>RAD52_EMENI (Q96UP6) DNA repair and recombination protein radC (RAD52 homolog)|
Length = 582
Score = 30.4 bits (67), Expect = 4.0
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 402 PEGHYQSPRGAREAARASGTQGHVACPKRP-LPAHL*DAGREGSPPKEARQLRTIPP 235
P H P+ A A+ASG Q HV P +P P +L AGR+ P +A R PP
Sbjct: 271 PNAHLNLPKHAL-GAQASGNQ-HVVTPSKPERPMNLAPAGRQ--IPNQALNNRPFPP 323
>CV106_HUMAN (Q6P0N0) Protein C14orf106 (P243)|
Length = 1132
Score = 30.4 bits (67), Expect = 4.0
Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Frame = -2
Query: 591 GERNEPALVQTTSSTSEEQHELPCRQGA--DPSWWRARHSREAVPAVDVLHHKPGADHAF 418
G R E + + S +H L C G D W + + HKPG
Sbjct: 847 GVRKEFPITEAVGSDKTNRHPLECLPGLIQDKEWNEKELQKLHCAFASLPKHKPGFWSEV 906
Query: 417 RQVCGPEGHYQSPRGAREAARASGTQGHVACPK 319
G + R E R G+Q HV K
Sbjct: 907 AAAVGSRSPEECQRKYMENPRGKGSQKHVTKKK 939
>MMP9_RABIT (P41246) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
(MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
(Gelatinase B) (GELB)
Length = 707
Score = 30.4 bits (67), Expect = 4.0
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -1
Query: 439 TGRRSCLPTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAP 299
T + PT T RP PT SP G P G G P +PS AP
Sbjct: 462 TAPPTACPTWPATVRPSEHPTTSPTGAP---SAGPTGPPTASPSAAP 505
>NCOA2_HUMAN (Q15596) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
intermediary factor 2)
Length = 1464
Score = 30.4 bits (67), Expect = 4.0
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Frame = -3
Query: 581 MNQPWSRLPPAPVRNNMNYLAAKEQIPRGGAPDIAEK----LSQLSMSSTTNRAPIMPSD 414
+ P P P+RN+ Y + G I + S M + P MPS
Sbjct: 893 LQSPTGAGPFPPIRNSSPYSVIPQPGMMGNQGMIGNQGNLGNSSTGMIGNSASRPTMPSG 952
Query: 413 RF--------VDLKATTRAHGEPVRRPVPLGPRDTWHARNDPFRRTYEMPGERALLQRKL 258
+ V ATT A PV+ + P A + P R + + PG+R LQ ++
Sbjct: 953 EWAPQSSAVRVTCAATTSAMNRPVQGGMIRNP-----AASIPMRPSSQ-PGQRQTLQSQV 1006
Query: 257 VS*GPS 240
++ GPS
Sbjct: 1007 MNIGPS 1012
>DPOG2_HUMAN (Q9UHN1) DNA polymerase gamma subunit 2, mitochondrial precursor|
(EC 2.7.7.7) (Mitochondrial DNA polymerase accessory
subunit) (PolG-beta) (MtPolB) (DNA polymerase gamma
accessory 55 kDa subunit) (p55)
Length = 485
Score = 30.4 bits (67), Expect = 4.0
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = -2
Query: 519 RQGADPSWWRARHS-REAVPAVDVLHHKPG----ADHAFRQV 409
R+ WW + RE V VD LHHKPG D AFR V
Sbjct: 107 RKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFRLV 148
>GRB10_MOUSE (Q60760) Growth factor receptor-bound protein 10 (GRB10 adaptor|
protein)
Length = 621
Score = 30.0 bits (66), Expect = 5.2
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 278 PSRPASHRCAGRGRFGHATCPWVPEARAASRAPRGLW*WPSGPQTCRKA*SAPGLWWRTS 457
PS+P + C GR W+P R +W W P + PGLW +T+
Sbjct: 109 PSQPPAKHC-GRCE------KWIPGENTRGNGKRKIWRWQFPPGFQLSKLTRPGLWTKTT 161
>GPR62_HUMAN (Q9BZJ7) Probable G-protein coupled receptor 62 (hGPCR8)|
Length = 368
Score = 30.0 bits (66), Expect = 5.2
Identities = 26/70 (37%), Positives = 28/70 (40%)
Frame = +2
Query: 374 PRGLW*WPSGPQTCRKA*SAPGLWWRTSTAGTASRLCLARHHEGSAPWRQGXXXXXXLVL 553
P GL GP CR A T G A+ L LAR+ P R G LVL
Sbjct: 75 PPGLGRVRLGPAPCRAARFLSAALLPACTLGVAA-LGLARYRLIVHPLRPGSRPPPVLVL 133
Query: 554 EVVWTKAGSL 583
VW AG L
Sbjct: 134 TAVWAAAGLL 143
>FAK1_XENLA (Q91738) Focal adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK)|
Length = 1068
Score = 30.0 bits (66), Expect = 5.2
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Frame = -2
Query: 495 WRARHSREAVPAVDVLHHKPGADHAFRQVCGPEGHYQSPRGAREAARASGTQGHVACPKR 316
W + R P DV + DH +G+ Q P G + + G HVA PK+
Sbjct: 838 WLEKEERFLKP--DVRLSRGSVDHV-------DGNIQCPAGNQHIYQPVGKPDHVAPPKK 888
Query: 315 P----LPAHL*DAGREGSP 271
P P+HL + SP
Sbjct: 889 PPRPGAPSHLGNLPAHNSP 907
>URB1_USTMA (P40349) Siderophore biosynthesis regulatory protein URBS1|
Length = 950
Score = 29.6 bits (65), Expect = 6.8
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = -1
Query: 382 PTGSP*GGPCLWDPGTR----GMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPSA 218
PTGS G P GTR + + P AP R +A S+ SSS +D PSA
Sbjct: 862 PTGSAQGSPGADARGTRSGHDSIKQEAPDAAPRRSKA--FSNSSSSSEKDELESPPPSA 918
>SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
ligase) (IleRS)
Length = 929
Score = 29.6 bits (65), Expect = 6.8
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Frame = +3
Query: 342 GSQRHGPPHGLP---VGSGSGLQVHKPVGRHDRRPVCXXXXXXXXXXXXYVWRA------ 494
G+ P HGL VGS GL+V PVG R +W+A
Sbjct: 328 GAVHTAPGHGLDDYVVGSRYGLKVDNPVGDDGR-----FYASVPLVGGMSIWQANPLIVE 382
Query: 495 ---TTRDLLLGGKVVHVVPHWCWR*SGP 569
+ LL K++H PH CWR P
Sbjct: 383 TLEASGALLAHEKLLHSYPH-CWRHKTP 409
>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)|
Length = 726
Score = 29.6 bits (65), Expect = 6.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 343 PGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 221
P + P + PSG P R + S GSSS+ +D+ S
Sbjct: 685 PARKEKPGSAPSGGPSRLSSSSSSESGSSSSSGSSSDSSDS 725
>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
(MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
(Gelatinase B) (GELB)
Length = 730
Score = 29.3 bits (64), Expect = 8.9
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 418 PTGLWT*RPLPEPTGSP*GGPCLW-DPGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDH 242
PT T P PTG+P GP PG G P P+ AP + +S S S D+
Sbjct: 475 PTAYPTVGPTVGPTGAPSPGPTSSPSPGPTGAPSPGPTAAPTAGSSE--ASTESLSPADN 532
Query: 241 P 239
P
Sbjct: 533 P 533
>HSP70_TRYCR (P05456) Heat shock 70 kDa protein|
Length = 680
Score = 29.3 bits (64), Expect = 8.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 300 GAPEGVVSGMPR-VPGSQRHGPPHGLPVGSGSGLQVHKPVG 419
G P G+ GMP +PG G P G+P G G+ P G
Sbjct: 625 GMPGGMPGGMPGGMPGGMPGGMPGGMPGGMPGGMPGGMPGG 665
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
(Helicase-like protein NHL)
Length = 1400
Score = 29.3 bits (64), Expect = 8.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 353 PLGPRDTWHARNDPFRRTYEMPGERALLQRKL 258
P P D W P E+PG LLQR L
Sbjct: 1366 PRQPHDVWPVSTAPLHAVLELPGALPLLQRPL 1397
>SAHH3_PONPY (Q5R889) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)|
(S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3)
Length = 508
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +1
Query: 133 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 276
AA A W G +WW C +GWQ DG LT +++++
Sbjct: 166 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 218
>SAHH3_HUMAN (Q96HN2) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)|
(S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3)
Length = 611
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +1
Query: 133 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 276
AA A W G +WW C +GWQ DG LT +++++
Sbjct: 269 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 321
>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic|
protein 1.2) (OsPIP1.2)
Length = 282
Score = 29.3 bits (64), Expect = 8.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 319 TTPSGAPMRCRARGLSSKGSSSAEDHPTDARPSA 218
TT S RC ++G SS+G S+A+ P+ PS+
Sbjct: 26 TTRSRRRRRCSSQGSSSRGPSTAQGSPSSWPPSS 59
>TLE2_BRARE (O13166) Groucho 2 protein|
Length = 761
Score = 29.3 bits (64), Expect = 8.9
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +3
Query: 216 MAEGRASVGWSSADELPLEESPLARHLIGAPEGVVSGMPRVPGSQRHGPPHGLP--VGSG 389
M E A +G LPL + A+HL V P G Q P G+P GSG
Sbjct: 116 MTELNAIIGVRGLPNLPLTQQLQAQHLSHTHGPVALTPPHPSGLQ----PPGIPPVTGSG 171
Query: 390 SGLQVHKPVGRHDRRP 437
SGL +G P
Sbjct: 172 SGLLALGALGSQPHLP 187
>SAHH3_MOUSE (Q68FL4) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)|
(S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3)
Length = 613
Score = 29.3 bits (64), Expect = 8.9
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +1
Query: 133 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 276
AA A W G +WW C +GWQ DG LT +++++
Sbjct: 271 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 323
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,248,786
Number of Sequences: 219361
Number of extensions: 2316138
Number of successful extensions: 7779
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7753
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)