ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd23c19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YDEM_CAEEL (Q19124) Hypothetical WD-repeat protein F02E8.5 28 5.4
2EST3_RAT (Q63108) Liver carboxylesterase 3 precursor (EC 3.1.1.1... 28 7.0
3Y131_UREPA (Q9PR13) Hypothetical protein UU131 28 7.0
4BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Ge... 28 7.0

>YDEM_CAEEL (Q19124) Hypothetical WD-repeat protein F02E8.5|
          Length = 578

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 156 WIDCLRPSCFISVLFIT*CFA 218
           W  C+ PSC   V+FI  CFA
Sbjct: 12  WSRCVHPSCVAWVIFIHFCFA 32



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>EST3_RAT (Q63108) Liver carboxylesterase 3 precursor (EC 3.1.1.1)|
           (Carboxyesterase ES-3) (pI 5.5 esterase) (ES-HTEL)
          Length = 561

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 11  QKIPFVNCCQKEQWVSIVHCLTKWLEEKLVD 103
           +KI  V+ C+     S+VHCL +  EE+L++
Sbjct: 265 EKIAVVSGCKSTTSASMVHCLRQKTEEELLE 295



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>Y131_UREPA (Q9PR13) Hypothetical protein UU131|
          Length = 268

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 265 SLIMGANNNKGPRAXDAKHYVMKXTLIKHDG 173
           SLI   N N  P+  +A HY      I H+G
Sbjct: 110 SLINNTNKNNDPKLYEALHYHAHSKFINHNG 140



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>BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)|
           (Cellobiase) (Beta-D-glucoside glucohydrolase)
          Length = 845

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -2

Query: 148 QPRKKSSRVLTNNKLIHQLFL*PFS*TVYYAHPLFFLTTINK 23
           + ++ SS  + + + + +++L PF   V +A+P+  +T  NK
Sbjct: 154 EDQRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNK 195


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,779,673
Number of Sequences: 219361
Number of extensions: 731853
Number of successful extensions: 1335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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